imas-python 1.1.2.dev42__py3-none-any.whl → 1.1.2.dev55__py3-none-any.whl

imas/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '1.1.2.dev42'
-__version_tuple__ = version_tuple = (1, 1, 2, 'dev42')
+__version__ = version = '1.1.2.dev55'
+__version_tuple__ = version_tuple = (1, 1, 2, 'dev55')

imas/backends/netcdf/db_entry_nc.py

@@ -33,12 +33,20 @@ class NCDBEntryImpl(DBEntryImpl):
                 "The `netCDF4` python module is not available. Please install this "
                 "module to read/write IMAS netCDF files with imas-python."
             )
+        # To support netcdf v1.4 (which has no mode "x") we map it to "w" with
+        # `clobber=True`.
+        if mode == "x":
+            mode = "w"
+            clobber = False
+        else:
+            clobber = True
 
         self._dataset = netCDF4.Dataset(
             fname,
             mode,
             format="NETCDF4",
             auto_complex=True,
+            clobber=clobber,
         )
         """NetCDF4 dataset."""
         self._factory = factory

imas/backends/netcdf/ids2nc.py

@@ -7,8 +7,10 @@ from typing import Iterator, Tuple
 
 import netCDF4
 import numpy
+from packaging import version
 
 from imas.backends.netcdf.nc_metadata import NCMetadata
+from imas.exception import InvalidNetCDFEntry
 from imas.ids_base import IDSBase
 from imas.ids_data_type import IDSDataType
 from imas.ids_defs import IDS_TIME_MODE_HOMOGENEOUS
@@ -185,9 +187,20 @@ class IDS2NC:
 
             else:
                 dtype = dtypes[metadata.data_type]
+                if (
+                    version.parse(netCDF4.__version__) < version.parse("1.7.0")
+                    and dtype is dtypes[IDSDataType.CPX]
+                ):
+                    raise InvalidNetCDFEntry(
+                        f"Found complex data in {var_name}, NetCDF 1.7.0 or"
+                        f" later is required for complex data types"
+                    )
                 kwargs = {}
                 if dtype is not str:  # Enable compression:
-                    kwargs.update(compression="zlib", complevel=1)
+                    if version.parse(netCDF4.__version__) > version.parse("1.4.1"):
+                        kwargs.update(compression="zlib", complevel=1)
+                    else:
+                        kwargs.update(zlib=True, complevel=1)
                 if dtype is not dtypes[IDSDataType.CPX]:  # Set fillvalue
                     kwargs.update(fill_value=default_fillvals[metadata.data_type])
                 # Create variable

imas/backends/netcdf/nc_validate.py

@@ -23,23 +23,24 @@ def validate_netcdf_file(filename: str) -> None:
         # additional variables are smuggled inside:
         groups = [dataset] + [dataset[group] for group in dataset.groups]
         for group in groups:
+            group_name = group.path.split("/")[-1]
             if group.variables or group.dimensions:
                 raise InvalidNetCDFEntry(
                     "NetCDF file should not have variables or dimensions in the "
-                    f"{group.name} group."
+                    f"{group_name} group."
                 )
             if group is dataset:
                 continue
-            if group.name not in ids_names:
+            if group_name not in ids_names:
                 raise InvalidNetCDFEntry(
-                    f"Invalid group name {group.name}: there is no IDS with this name."
+                    f"Invalid group name {group_name}: there is no IDS with this name."
                 )
             for subgroup in group.groups:
                 try:
                     int(subgroup)
                 except ValueError:
                     raise InvalidNetCDFEntry(
-                        f"Invalid group name {group.name}/{subgroup}: "
+                        f"Invalid group name {group_name}/{subgroup}: "
                         f"{subgroup} is not a valid occurrence number."
                     )
 

imas/ids_primitive.py

@@ -481,7 +481,10 @@ class IDSNumericArray(IDSPrimitive, np.lib.mixins.NDArrayOperatorsMixin):
         value = np.asanyarray(value)
         if value.dtype != dtype:
             logger.info(_CONVERT_MSG, value.dtype, self)
-        value = np.array(value, dtype=dtype, copy=False)
+        value = np.asarray(
+            value,
+            dtype=dtype,
+        )
         if value.ndim != self.metadata.ndim:
             raise ValueError(f"Trying to assign a {value.ndim}D value to {self!r}.")
         return value

imas/test/test_cli.py

@@ -4,6 +4,7 @@ import pytest
 from click.testing import CliRunner
 from packaging.version import Version
 
+from imas.backends.imas_core.imas_interface import has_imas
 from imas.backends.imas_core.imas_interface import ll_interface
 from imas.command.cli import print_version
 from imas.command.db_analysis import analyze_db, process_db_analysis
@@ -19,8 +20,13 @@ def test_imas_version():
 
 
 @pytest.mark.cli
-@pytest.mark.skipif(ll_interface._al_version < Version("5.0"), reason="Needs AL >= 5")
-def test_db_analysis(tmp_path):
+@pytest.mark.skipif(
+    not has_imas or ll_interface._al_version < Version("5.0"),
+    reason="Needs AL >= 5 AND Requires IMAS Core.",
+)
+def test_db_analysis(
+    tmp_path,
+):
     # This only tests the happy flow, error handling is not tested
     db_path = tmp_path / "test_db_analysis"
     with DBEntry(f"imas:hdf5?path={db_path}", "w") as entry:

imas/test/test_dbentry.py

@@ -82,7 +82,7 @@ def test_dbentry_constructor():
     assert get_entry_attrs(entry) == (1, 2, 3, 4, None, 6)
 
 
-def test_ignore_unknown_dd_version(monkeypatch, worker_id, tmp_path):
+def test_ignore_unknown_dd_version(monkeypatch, worker_id, tmp_path, requires_imas):
     entry = open_dbentry(imas.ids_defs.MEMORY_BACKEND, "w", worker_id, tmp_path)
     ids = entry.factory.core_profiles()
     ids.ids_properties.homogeneous_time = 0

imas/test/test_helpers.py

@@ -93,7 +93,9 @@ def fill_with_random_data(structure, max_children=3):
                 child.value = random_data(child.metadata.data_type, child.metadata.ndim)
 
 
-def maybe_set_random_value(primitive: IDSPrimitive, leave_empty: float) -> None:
+def maybe_set_random_value(
+    primitive: IDSPrimitive, leave_empty: float, skip_complex: bool
+) -> None:
     """Set the value of an IDS primitive with a certain chance.
 
     If the IDSPrimitive has coordinates, then the size of the coordinates is taken into
@@ -153,7 +155,7 @@ def maybe_set_random_value(primitive: IDSPrimitive, leave_empty: float) -> None:
                 # Scale chance of not setting a coordinate by our number of dimensions,
                 # such that overall there is roughly a 50% chance that any coordinate
                 # remains empty
-                maybe_set_random_value(coordinate_element, 0.5**ndim)
+                maybe_set_random_value(coordinate_element, 0.5**ndim, skip_complex)
             size = coordinate_element.shape[0 if coordinate.references else dim]
 
             if coordinate.size:  # coordinateX = <path> OR 1...1
@@ -176,13 +178,18 @@ def maybe_set_random_value(primitive: IDSPrimitive, leave_empty: float) -> None:
     elif primitive.metadata.data_type is IDSDataType.FLT:
         primitive.value = np.random.random_sample(size=shape)
     elif primitive.metadata.data_type is IDSDataType.CPX:
+        if skip_complex:
+            # If we are skipping complex numbers then leave the value empty.
+            return
         val = np.random.random_sample(shape) + 1j * np.random.random_sample(shape)
         primitive.value = val
     else:
         raise ValueError(f"Invalid IDS data type: {primitive.metadata.data_type}")
 
 
-def fill_consistent(structure: IDSStructure, leave_empty: float = 0.2):
+def fill_consistent(
+    structure: IDSStructure, leave_empty: float = 0.2, skip_complex: bool = False
+):
     """Fill a structure with random data, such that coordinate sizes are consistent.
 
     Sets homogeneous_time to heterogeneous (always).
@@ -196,6 +203,9 @@ def fill_consistent(structure: IDSStructure, leave_empty: float = 0.2):
         exclusive_coordinates: list of IDSPrimitives that have exclusive alternative
             coordinates. These are initially not filled, and only at the very end of
             filling an IDSToplevel, a choice is made between the exclusive coordinates.
+        skip_complex: Whether to skip over populating complex numbers. This is
+            useful for maintaining compatibility with older versions of netCDF4
+            (<1.7.0) where complex numbers are not supported.
     """
     if isinstance(structure, IDSToplevel):
         unsupported_ids_name = (
@@ -218,7 +228,9 @@ def fill_consistent(structure: IDSStructure, leave_empty: float = 0.2):
 
     for child in structure:
         if isinstance(child, IDSStructure):
-            exclusive_coordinates.extend(fill_consistent(child, leave_empty))
+            exclusive_coordinates.extend(
+                fill_consistent(child, leave_empty, skip_complex)
+            )
 
         elif isinstance(child, IDSStructArray):
             if child.metadata.coordinates[0].references:
@@ -230,7 +242,7 @@ def fill_consistent(structure: IDSStructure, leave_empty: float = 0.2):
                     if isinstance(coor, IDSPrimitive):
                         # maybe fill with random data:
                         try:
-                            maybe_set_random_value(coor, leave_empty)
+                            maybe_set_random_value(coor, leave_empty, skip_complex)
                         except (RuntimeError, ValueError):
                             pass
                         child.resize(len(coor))
@@ -244,7 +256,9 @@ def fill_consistent(structure: IDSStructure, leave_empty: float = 0.2):
             else:
                 child.resize(child.metadata.coordinates[0].size or 1)
             for ele in child:
-                exclusive_coordinates.extend(fill_consistent(ele, leave_empty))
+                exclusive_coordinates.extend(
+                    fill_consistent(ele, leave_empty, skip_complex)
+                )
 
         else:  # IDSPrimitive
             coordinates = child.metadata.coordinates
@@ -256,7 +270,7 @@ def fill_consistent(structure: IDSStructure, leave_empty: float = 0.2):
                 exclusive_coordinates.append(child)
             else:
                 try:
-                    maybe_set_random_value(child, leave_empty)
+                    maybe_set_random_value(child, leave_empty, skip_complex)
                 except (RuntimeError, ValueError):
                     pass
 
@@ -278,7 +292,7 @@ def fill_consistent(structure: IDSStructure, leave_empty: float = 0.2):
                     coor = filled_refs.pop()
                     unset_coordinate(coor)
 
-            maybe_set_random_value(element, leave_empty)
+            maybe_set_random_value(element, leave_empty, skip_complex)
     else:
         return exclusive_coordinates
 

imas/test/test_ids_toplevel.py

@@ -46,7 +46,7 @@ def test_pretty_print(ids):
     assert pprint.pformat(ids) == "<IDSToplevel (IDS:gyrokinetics)>"
 
 
-def test_serialize_nondefault_dd_version():
+def test_serialize_nondefault_dd_version(requires_imas):
     ids = IDSFactory("3.31.0").core_profiles()
     fill_with_random_data(ids)
     data = ids.serialize()

imas/test/test_minimal_types.py

@@ -1,5 +1,6 @@
 # A minimal testcase loading an IDS file and checking that the structure built is ok
 from numbers import Complex, Integral, Number, Real
+from packaging import version
 
 import numpy as np
 import pytest
@@ -61,7 +62,11 @@ def test_assign_str_1d(minimal, caplog):
 
 
 # Prevent the expected numpy ComplexWarnings from cluttering pytest output
-@pytest.mark.filterwarnings("ignore::numpy.ComplexWarning")
+@pytest.mark.filterwarnings(
+    "ignore::numpy.ComplexWarning"
+    if version.parse(np.__version__) < version.parse("1.25")
+    else "ignore::numpy.exceptions.ComplexWarning"
+)
 @pytest.mark.parametrize("typ, max_dim", [("flt", 6), ("cpx", 6), ("int", 3)])
 def test_assign_numeric_types(minimal, caplog, typ, max_dim):
     caplog.set_level("INFO", "imas")
@@ -87,7 +92,11 @@ def test_assign_numeric_types(minimal, caplog, typ, max_dim):
                         len(caplog.records) == 1
                 elif dim == other_ndim >= 1 and other_typ == "cpx":
                     # np allows casting of complex to float or int, but warns:
-                    with pytest.warns(np.ComplexWarning):
+                    with pytest.warns(
+                        np.ComplexWarning
+                        if version.parse(np.__version__) < version.parse("1.25")
+                        else np.exceptions.ComplexWarning
+                    ):
                         caplog.clear()
                         minimal[name].value = value
                         assert len(caplog.records) == 1

imas/test/test_nbc_change.py

@@ -54,7 +54,7 @@ def test_nbc_structure_to_aos(caplog):
     assert caplog.record_tuples[0][:2] == ("imas.ids_convert", logging.WARNING)
 
 
-def test_nbc_0d_to_1d(caplog):
+def test_nbc_0d_to_1d(caplog, requires_imas):
     # channel/filter_spectrometer/radiance_calibration in spectrometer visible changed
     # from FLT_0D to FLT_1D in DD 3.39.0
     ids = IDSFactory("3.32.0").spectrometer_visible()

imas/test/test_nc_autofill.py

@@ -1,11 +1,52 @@
 from imas.db_entry import DBEntry
+from imas.exception import InvalidNetCDFEntry
 from imas.test.test_helpers import compare_children, fill_consistent
+import re
+import pytest
+import netCDF4
+from packaging import version
 
 
-def test_nc_latest_dd_autofill_put_get(ids_name, tmp_path):
+def test_nc_latest_dd_autofill_put_get_skip_complex(ids_name, tmp_path):
     with DBEntry(f"{tmp_path}/test-{ids_name}.nc", "x") as entry:
         ids = entry.factory.new(ids_name)
-        fill_consistent(ids, 0.5)
+        fill_consistent(ids, leave_empty=0.5, skip_complex=True)
+
+        entry.put(ids)
+        ids2 = entry.get(ids_name)
+
+    compare_children(ids, ids2)
+
+
+@pytest.mark.skipif(
+    version.parse(netCDF4.__version__) >= version.parse("1.7.0"),
+    reason="NetCDF4 versions < 1.7.0 do not support complex numbers",
+)
+def test_nc_latest_dd_autofill_put_get_with_complex_older_netCDF4(ids_name, tmp_path):
+    with DBEntry(f"{tmp_path}/test-{ids_name}.nc", "x") as entry:
+        ids = entry.factory.new(ids_name)
+        fill_consistent(ids, leave_empty=0.5, skip_complex=False)
+        try:
+            entry.put(ids)
+            ids2 = entry.get(ids_name)
+            compare_children(ids, ids2)
+        except InvalidNetCDFEntry as e:
+            # This is expected, as these versions of NetCDF4 do not support
+            # complex numbers.
+            if not re.search(
+                r".*NetCDF 1.7.0 or later is required for complex data types", str(e)
+            ):
+                raise InvalidNetCDFEntry(e) from e
+
+
+@pytest.mark.skipif(
+    version.parse(netCDF4.__version__) < version.parse("1.7.0"),
+    reason="NetCDF4 versions >= 1.7.0 support complex numbers",
+)
+def test_nc_latest_dd_autofill_put_get_with_complex_newer_netCDF4(ids_name, tmp_path):
+    with DBEntry(f"{tmp_path}/test-{ids_name}.nc", "x") as entry:
+        ids = entry.factory.new(ids_name)
+        fill_consistent(ids, leave_empty=0.5, skip_complex=False)
 
         entry.put(ids)
         ids2 = entry.get(ids_name)

imas/test/test_static_ids.py

@@ -21,7 +21,7 @@ def test_ids_valid_type():
     assert ids_types in ({IDSType.NONE}, {IDSType.CONSTANT, IDSType.DYNAMIC})
 
 
-def test_constant_ids(caplog):
+def test_constant_ids(caplog, requires_imas):
     ids = imas.IDSFactory().new("amns_data")
     if ids.metadata.type is IDSType.NONE:
         pytest.skip("IDS definition has no constant IDSs")

imas/test/test_util.py

@@ -54,7 +54,7 @@ def test_inspect():
     inspect(cp.profiles_1d[1].grid.rho_tor_norm)  # IDSPrimitive
 
 
-def test_inspect_lazy():
+def test_inspect_lazy(requires_imas):
     with get_training_db_entry() as entry:
         cp = entry.get("core_profiles", lazy=True)
         inspect(cp)
@@ -141,7 +141,7 @@ def test_idsdiffgen():
     assert diff[0] == ("profiles_1d/time", -1, 0)
 
 
-def test_idsdiff():
+def test_idsdiff(requires_imas):
     # Test the diff rendering for two sample IDSs
     with get_training_db_entry() as entry:
         imas.util.idsdiff(entry.get("core_profiles"), entry.get("equilibrium"))
@@ -179,7 +179,7 @@ def test_get_toplevel():
     assert get_toplevel(cp) is cp
 
 
-def test_is_lazy_loaded():
+def test_is_lazy_loaded(requires_imas):
     with get_training_db_entry() as entry:
         assert is_lazy_loaded(entry.get("core_profiles")) is False
         assert is_lazy_loaded(entry.get("core_profiles", lazy=True)) is True

{imas_python-1.1.2.dev42.dist-info → imas_python-1.1.2.dev55.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: imas-python
-Version: 1.1.2.dev42
+Version: 1.1.2.dev55
 Summary: Pythonic wrappers for the IMAS Access Layer
 Author: ITER Organization
 Author-email: Karel Lucas van de Plassche <karelvandeplassche@gmail.com>, Daan van Vugt <dvanvugt@ignitioncomputing.com>, Maarten Sebregts <msebregts@ignitioncomputing.com>, imas-support@iter.org
@@ -222,7 +222,7 @@ Requires-Dist: sphinx-autosummary-accessors>=0.1.2; extra == "docs"
 Requires-Dist: sphinx-immaterial<0.12,>=0.11.0; extra == "docs"
 Requires-Dist: sphinx-click; extra == "docs"
 Provides-Extra: netcdf
-Requires-Dist: netCDF4>=1.7.0; extra == "netcdf"
+Requires-Dist: netCDF4>=1.4.1; extra == "netcdf"
 Provides-Extra: h5py
 Requires-Dist: h5py; extra == "h5py"
 Provides-Extra: test

imas_python-1.1.2.dev55.dist-info/RECORD

@@ -0,0 +1,109 @@
+imas/__init__.py,sha256=9OHpTf8gCl7BJVU7U2bf9kWatBNNAhFZdgoFPcHeNQU,878
+imas/__main__.py,sha256=2qXoC0HzV4xkPQAvdubHC4rnK3G6f_2PT9TkkCHYXk8,418
+imas/_util.py,sha256=FXX13glhmgSiw-0LtjH0xv3YlM3Pa9X4jl9yz9Uv7Vs,9484
+imas/_version.py,sha256=tuWr0XXT4IvYbzu1_D_gDAzw-v8PnK2RKX2lweVaseE,426
+imas/db_entry.py,sha256=OnAgz0c97gbEizrDcuO909VFUzOzeU1OIwWe50PCCxw,31755
+imas/dd_helpers.py,sha256=IFRmOWw0VyLuR9Xpe9VeVy1ANq5XpFF4m1rj9RtETKI,6275
+imas/dd_zip.py,sha256=6gQ91rlVsDaU1U6XXaEnaGyvI3ZgQ659GOgIYJLZH6M,10322
+imas/exception.py,sha256=iqsxl6M1gEjJO8YP9UBYt5OQk7faGx0EIs1XJ4YJ71U,3750
+imas/ids_base.py,sha256=zDckve7poXO9vbKPsi_17FjKMTKd6QADork7H7wIS7o,5439
+imas/ids_convert.py,sha256=OixW99Gpm77n0wj2RwlasFP_jzAN_wozrlCn_BtkbvM,38548
+imas/ids_coordinates.py,sha256=aLrA5XWK5eI6fEeJjLIRtexL5IcNVrq1Uuh_7lPNsSs,16955
+imas/ids_data_type.py,sha256=2Kz2FumzgBPH7lEg29qxOxwK9kroUOkLCULZ4tK2kSk,3302
+imas/ids_defs.py,sha256=nlVsS5Nw8P838gazBMXUxhzirONKKRq-r60--_Nd9nk,5417
+imas/ids_factory.py,sha256=t55O1PB2Nj1vQ1EroC-7dQyB1Va_iSTCCUFINjUKnos,3774
+imas/ids_identifiers.py,sha256=YwDjNu7M2kYrEJY5dcOCG0w5OKsWhqzQqCjQzX71HBI,4164
+imas/ids_metadata.py,sha256=kpyNKXB9-aQpjdj1df10qKZIJ7-HC5BuDOhGyhX9YMI,12258
+imas/ids_path.py,sha256=rqucboH8wO4-njy8d6lUffnfHA6L2b81wh8AJ6Y_gbU,10446
+imas/ids_primitive.py,sha256=3ALc0RvqF1y6_nCgMiszEtTlxwufdqT2YmpAybh8PUs,16835
+imas/ids_struct_array.py,sha256=BFBa1wSZFAlZguExCTA56D8RfnaLv-nbxDIz9fMhcGE,8292
+imas/ids_structure.py,sha256=0DRudIturYE2Aw_Jb22zBZCd_zyA0-lg8YOEI7Y_iso,13107
+imas/ids_toplevel.py,sha256=YHWZewK8JYf34pYzF_oooMILZAHgnuWCFtr0_JFjmzI,14915
+imas/setup_logging.py,sha256=McfIYupRQDxtL-lasTjH5F8BxBvncuZhcpzSDEwKtJQ,1872
+imas/training.py,sha256=JGYjpCubUJDb_Rg0QaaDhNkBHc4Qc376U9fRq24NVXc,1576
+imas/util.py,sha256=dG282-l7m2U_VhjZ0VnQ-BpsWrzgKSxUZ1AZf-_wDOY,17822
+imas/assets/IDSDef.zip,sha256=ji71sLv6f0vIzlR2ho-uXwAwNRax9ba_XCAi_YZC3oQ,27383258
+imas/assets/IDSDef2MDSpreTree.xsl,sha256=V9eDmDnxe6oYhDP81gmdYip8cF2yST9dGxmZBaATLdA,7296
+imas/assets/IDS_fake_toplevel.xml,sha256=TJhukQuDHHVTW2U7fK_-KmTQiYOFZMY-ECZXBHQE2mk,18683
+imas/assets/IDS_minimal.xml,sha256=5B6c0J-WPzSChHWwpLPRkNawx9m6v8BM5nC0OQFnWcQ,1740
+imas/assets/IDS_minimal_2.xml,sha256=IPv3ozVmzo8fIQAtxWq4n487FF4OWKrgs2V1FIK-DpA,1739
+imas/assets/IDS_minimal_struct_array.xml,sha256=RekSaQllcIRqE2dOEcEwOHSrC-k43u4qxW3Y5pzYV5E,1943
+imas/assets/IDS_minimal_types.xml,sha256=rPPFpGMGder_WS_IwE_7xk0uVSqowHATfosy4PE0NqA,6864
+imas/assets/ITER_134173_106_core_profiles.ids,sha256=KMECYN66bq08H8zZSk21HB5nBr2Iou4uPzfaAoaAvhQ,753508
+imas/assets/ITER_134173_106_equilibrium.ids,sha256=uYpVwTAyGVcWCrBUdSR3427qDY5zx1WXeX4Hd-o_2Jo,3796340
+imas/assets/README.md,sha256=-bempMZGQbciI4u042p25lFnYRIbPOZlCvCKTQ2TgSA,177
+imas/assets/core_profiles.ids,sha256=KMECYN66bq08H8zZSk21HB5nBr2Iou4uPzfaAoaAvhQ,753508
+imas/assets/equilibrium.ids,sha256=uYpVwTAyGVcWCrBUdSR3427qDY5zx1WXeX4Hd-o_2Jo,3796340
+imas/backends/__init__.py,sha256=SK1JCpWntWkzdvSZ-U9aPwaeJlVnNfJmzo2dwgmQaww,469
+imas/backends/db_entry_impl.py,sha256=28cbAMWSqKDQiEBqwjEFYDEbIRonwthl6ma3urJxlOs,3995
+imas/backends/imas_core/__init__.py,sha256=Zi-Z_qCvZdFotE_rJwQjz_Xdsi5h201z9hVYAlmn8Mw,190
+imas/backends/imas_core/al_context.py,sha256=D5PUg6o487kR9diRK9ZclkCpzbn-Brzhkf-SKOZSBLI,14174
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imas/assets/IDSDef/identifiers/core_instant_changes/core_instant_changes_identifier.xml

@@ -1,15 +0,0 @@
-<?xml version="1.0"?>
-<constants name="core_instant_changes_identifier" identifier="yes" create_mapping_function="yes">
-<header>
-Translation table for types of instant changes to the plasma state.
-</header>
-
-<idsInstance xpath="/core_instant_changes/change/identifier"/>
-
-<int name="unspecified"        description="Unspecified instant changes"                               >0</int>
-<int name="total"              description="Total instant changes; combines all types of events"       >1</int>
-<int name="pellet"             description="Instant changes from a pellet"                             >2</int>
-<int name="sawtooth"           description="Instant changes from a sawtooth"                           >3</int>
-<int name="elm"                description="Instant changes from an edge localised mode"               >4</int>
-
-</constants>

imas/assets/IDSDef/identifiers/core_sources/core_source_identifier.xml

@@ -1,76 +0,0 @@
-<?xml version="1.0"?>
-<constants name="core_source" identifier="yes" create_mapping_function="yes">
-<header>
-Translation table for sources of particles, momentum and heat.
-</header>
-<!-- Some lines and indices are common with the edge_sources/source/identifier --> 
-
-<ddInstance xpath="/core_sources/source/identifier"/>
-
-<int name="unspecified"             description="Unspecified source type"                                                         >0</int>
-<int name="total"                   description="Total source; combines all sources"                                              >1</int>
-<int name="nbi"                     description="Source from Neutral Beam Injection"                                              >2</int>
-<int name="ec"                      description="Sources from electron cyclotron heating and current drive"               >3</int>
-<int name="lh"                      description="Sources from lower hybrid heating and current drive"                             >4</int>
-<int name="ic"                      description="Sources from heating at the ion cyclotron range of frequencies"                  >5</int>
-<int name="fusion"                  description="Sources from fusion reactions, e.g. alpha particle heating"                      >6</int>
-<int name="ohmic"                   description="Source from ohmic heating"                                                       >7</int>
-<int name="bremsstrahlung"          description="Source from bremsstrahlung; radiation losses are negative sources"                >8</int>
-<int name="synchrotron_radiation"   description="Source from synchrotron radiation; radiation losses are negative sources"         >9</int>
-<int name="line_radiation"          description="Source from line radiation; radiation losses are negative sources"               >10</int>
-<int name="collisional_equipartition" description="Collisional equipartition"                                                     >11</int>
-<int name="cold_neutrals"           description="Source of cold neutrals"                                                         >12</int>
-<int name="bootstrap_current"       description="Bootstrap current"                                                               >13</int>
-<int name="pellet"                  description="Sources from injection"                                                          >14</int>
-
-<int name="auxiliary"               description="Source from auxiliary systems, e.g. heating and current drive systems"           >100</int>
-<int name="ic_nbi"                  description="A combination of the ic and nbi sources"                                         >101</int>
-<int name="ic_fusion"               description="A combination of the ic and fusion sources"                                      >102</int>
-<int name="ic_nbi_fusion"           description="A combination of the ic and fusion sources"                                      >103</int>
-<int name="ec_lh"                   description="A combination of the ec and lh sources"                                          >104</int>
-<int name="ec_ic"                   description="A combination of the ec and ic sources"                                          >105</int>
-<int name="lh_ic"                   description="A combination of the lh and ic sources"                                          >106</int>
-<int name="ec_lh_ic"                description="A combination of the ec, lh and ic sources"                                      >107</int>
-<int name="gas_puff"                description="Gas puff"                                                                        >108</int>
-<int name="killer_gas_puff"         description="Killer gas puff"                                                                 >109</int>
-
-<int name="radiation"               description="Total radiation source; radiation losses are negative sources"                         >200</int>
-<int name="cyclotron_radiation"     description="Source from cyclotron radiation; radiation losses are negative sources"          >201</int>
-<int name="cyclotron_synchrotron_radiation" description="Source from combined cyclotron and synchrotron radiation; radiation losses are negative sources"  >202</int>
-<int name="impurity_radiation"      description="Line radiation and Bremsstrahlung source; radiation losses are negative sources." >203</int>
-
-<int name="particles_to_wall"       description="Particle pumping by the wall; negative source for plasma and positive source for the wall" >303</int>
-<int name="particles_to_pump"       description="Particle pumping by external pump; negative source for plasma and positive source for the pump" >304</int>
-<int name="charge_exchange"        description="Source from charge exchange. Charge exchange losses are negative sources"                                   >305</int>
-
-<int name="transport"               description="Source term related to transport processes"                                      >400</int>
-<int name="neoclassical"            description="Source term related to neoclassical processes"                                   >401</int>
-<int name="equipartition"           description="Equipartition due to collisions and turbulence"                                  >402</int>
-<int name="turbulent_equipartition" description="Turbulent equipartition"                                                         >403</int>
-
-<int name="runaways"                description="Source from run-away processes; includes both electron and ion run-away"         >501</int>
-
-<int name="ionisation"                description="Source from ionisation processes (not accounting for charge exchange)"         >601</int>
-<int name="recombination"          description="Source from recombination processes (not accounting for charge exchange)"   >602</int>
-<int name="excitation"            description="Source from excitation processes"            >603</int>
-
-<int name="database"                description="Source from database entry"                                                      >801</int>
-<int name="gaussian"                description="Artificial source with a gaussian profile"                                       >802</int>
-
-<int name="custom_1"      description="Custom source terms 1; content to be decided by data provided"                             >901</int>
-<int name="custom_2"      description="Custom source terms 2; content to be decided by data provided"                             >902</int>
-<int name="custom_3"      description="Custom source terms 3; content to be decided by data provided"                             >903</int>
-<int name="custom_4"      description="Custom source terms 4; content to be decided by data provided"                             >904</int>
-<int name="custom_5"      description="Custom source terms 5; content to be decided by data provided"                             >905</int>
-<int name="custom_6"      description="Custom source terms 6; content to be decided by data provided"                             >906</int>
-<int name="custom_7"      description="Custom source terms 7; content to be decided by data provided"                             >907</int>
-<int name="custom_8"      description="Custom source terms 8; content to be decided by data provided"                             >908</int>
-<int name="custom_9"      description="Custom source terms 9; content to be decided by data provided"                             >909</int>
-
-<!-- Not sure what these sources represents?
-<int name="background"              description="Background source"                                                               >28</int>
-<int name="impurity"                description="Impurity source"                                                                 >29</int>
-<int name="cold_neutral_cooling"    description="Cold neutrals from the edge that enters the plasma"                              >24</int>
--->
-
-</constants>