imas-python 0.1.dev1652__py3-none-any.whl → 1.1.2.dev54__py3-none-any.whl

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Files changed (128) hide show
  1. imas/_version.py +2 -2
  2. imas/assets/IDSDef/identifiers/core_instant_changes/core_instant_changes_identifier.xml +15 -0
  3. imas/assets/IDSDef/identifiers/core_sources/core_source_identifier.xml +76 -0
  4. imas/assets/IDSDef/identifiers/core_transport/core_transport_identifier.xml +25 -0
  5. imas/assets/IDSDef/identifiers/edge_sources/edge_source_identifier.xml +31 -0
  6. imas/assets/IDSDef/identifiers/edge_transport/edge_transport_identifier.xml +25 -0
  7. imas/assets/IDSDef/identifiers/em_coupling/em_coupling_quantity_identifier.xml +27 -0
  8. imas/assets/IDSDef/identifiers/equilibrium/equilibrium_profiles_2d_identifier.xml +21 -0
  9. imas/assets/IDSDef/identifiers/magnetics/magnetics_flux_loop_type_identifier.xml +14 -0
  10. imas/assets/IDSDef/identifiers/magnetics/magnetics_probe_type_identifier.xml +16 -0
  11. imas/assets/IDSDef/identifiers/magnetics/magnetics_rogowski_measured_identifier.xml +13 -0
  12. imas/assets/IDSDef/identifiers/mhd_linear/mhd_linear_ballooning_identifier.xml +13 -0
  13. imas/assets/IDSDef/identifiers/mhd_linear/mhd_linear_equations_identifier.xml +15 -0
  14. imas/assets/IDSDef/identifiers/mhd_linear/mhd_linear_model_identifier.xml +14 -0
  15. imas/assets/IDSDef/identifiers/mhd_linear/mhd_linear_perturbation_identifier.xml +24 -0
  16. imas/assets/IDSDef/identifiers/neutron_diagnostic/neutron_event_identifier.xml +18 -0
  17. imas/assets/IDSDef/identifiers/neutron_diagnostic/neutron_mode_identifier.xml +15 -0
  18. imas/assets/IDSDef/identifiers/operational_instrumentation/operational_sensor_type_identifier.xml +15 -0
  19. imas/assets/IDSDef/identifiers/pf_active/pf_active_coil_function_identifier.xml +10 -0
  20. imas/assets/IDSDef/identifiers/plasma_sources/plasma_source_identifier.xml +70 -0
  21. imas/assets/IDSDef/identifiers/plasma_transport/plasma_transport_identifier.xml +38 -0
  22. imas/assets/IDSDef/identifiers/radiation/radiation_identifier.xml +23 -0
  23. imas/assets/IDSDef/identifiers/refractometer/refractometer_formula_identifier.xml +12 -0
  24. imas/assets/IDSDef/identifiers/runaway_electrons/e_field_critical_identifier.xml +12 -0
  25. imas/assets/IDSDef/identifiers/runaway_electrons/momentum_critical_avalanche_identifier.xml +11 -0
  26. imas/assets/IDSDef/identifiers/runaway_electrons/momentum_critical_hot_tail_identifier.xml +11 -0
  27. imas/assets/IDSDef/identifiers/spectrometer_visible/spectrometer_visible_method_identifier.xml +13 -0
  28. imas/assets/IDSDef/identifiers/spectrometer_x_ray_crystal/crystal_mesh_identifier.xml +12 -0
  29. imas/assets/IDSDef/identifiers/spectrometer_x_ray_crystal/spectro_x_instrument_function_identifier.xml +14 -0
  30. imas/assets/IDSDef/identifiers/spi/shatter_cone_identifier.xml +11 -0
  31. imas/assets/IDSDef/identifiers/utilities/coordinate_identifier.xml +51 -0
  32. imas/assets/IDSDef/identifiers/utilities/curved_object_curvature_identifier.xml +16 -0
  33. imas/assets/IDSDef/identifiers/utilities/curved_object_geometry_identifier.xml +14 -0
  34. imas/assets/IDSDef/identifiers/utilities/data_type_identifier.xml +12 -0
  35. imas/assets/IDSDef/identifiers/utilities/distribution_source_identifier.xml +36 -0
  36. imas/assets/IDSDef/identifiers/utilities/emission_grid_identifier.xml +9 -0
  37. imas/assets/IDSDef/identifiers/utilities/ggd_geometry_content_identifier.xml +21 -0
  38. imas/assets/IDSDef/identifiers/utilities/ggd_identifier.xml +29 -0
  39. imas/assets/IDSDef/identifiers/utilities/ggd_space_identifier.xml +18 -0
  40. imas/assets/IDSDef/identifiers/utilities/ggd_subset_identifier.xml +70 -0
  41. imas/assets/IDSDef/identifiers/utilities/materials_identifier.xml +43 -0
  42. imas/assets/IDSDef/identifiers/utilities/midplane_identifier.xml +14 -0
  43. imas/assets/IDSDef/identifiers/utilities/neutrals_identifier.xml +20 -0
  44. imas/assets/IDSDef/identifiers/utilities/occurrence_type_identifier.xml +11 -0
  45. imas/assets/IDSDef/identifiers/utilities/optical_element_identifier.xml +13 -0
  46. imas/assets/IDSDef/identifiers/utilities/optical_element_material_identifier.xml +12 -0
  47. imas/assets/IDSDef/identifiers/utilities/orbit_type_identifier.xml +20 -0
  48. imas/assets/IDSDef/identifiers/utilities/poloidal_plane_coordinates_identifier.xml +119 -0
  49. imas/assets/IDSDef/identifiers/utilities/species_reference_identifier.xml +19 -0
  50. imas/assets/IDSDef/identifiers/utilities/statistics_type_identifier.xml +17 -0
  51. imas/assets/IDSDef/identifiers/utilities/surface_geometry_identifier.xml +16 -0
  52. imas/assets/IDSDef/identifiers/utilities/wave_identifier.xml +15 -0
  53. imas/assets/IDSDef/identifiers/wall/wall_component_identifier.xml +18 -0
  54. imas/assets/IDSDef/identifiers/wall/wall_description_2d_type_identifier.xml +13 -0
  55. imas/assets/IDSDef.zip +0 -0
  56. imas/assets/IDSDef_correct/identifiers/core_instant_changes/core_instant_changes_identifier.xml +15 -0
  57. imas/assets/IDSDef_correct/identifiers/core_sources/core_source_identifier.xml +76 -0
  58. imas/assets/IDSDef_correct/identifiers/core_transport/core_transport_identifier.xml +25 -0
  59. imas/assets/IDSDef_correct/identifiers/edge_sources/edge_source_identifier.xml +31 -0
  60. imas/assets/IDSDef_correct/identifiers/edge_transport/edge_transport_identifier.xml +25 -0
  61. imas/assets/IDSDef_correct/identifiers/em_coupling/em_coupling_quantity_identifier.xml +27 -0
  62. imas/assets/IDSDef_correct/identifiers/equilibrium/equilibrium_profiles_2d_identifier.xml +21 -0
  63. imas/assets/IDSDef_correct/identifiers/magnetics/magnetics_flux_loop_type_identifier.xml +14 -0
  64. imas/assets/IDSDef_correct/identifiers/magnetics/magnetics_probe_type_identifier.xml +16 -0
  65. imas/assets/IDSDef_correct/identifiers/magnetics/magnetics_rogowski_measured_identifier.xml +13 -0
  66. imas/assets/IDSDef_correct/identifiers/mhd_linear/mhd_linear_ballooning_identifier.xml +13 -0
  67. imas/assets/IDSDef_correct/identifiers/mhd_linear/mhd_linear_equations_identifier.xml +15 -0
  68. imas/assets/IDSDef_correct/identifiers/mhd_linear/mhd_linear_model_identifier.xml +14 -0
  69. imas/assets/IDSDef_correct/identifiers/mhd_linear/mhd_linear_perturbation_identifier.xml +24 -0
  70. imas/assets/IDSDef_correct/identifiers/neutron_diagnostic/neutron_event_identifier.xml +18 -0
  71. imas/assets/IDSDef_correct/identifiers/neutron_diagnostic/neutron_mode_identifier.xml +15 -0
  72. imas/assets/IDSDef_correct/identifiers/operational_instrumentation/operational_sensor_type_identifier.xml +15 -0
  73. imas/assets/IDSDef_correct/identifiers/pf_active/pf_active_coil_function_identifier.xml +10 -0
  74. imas/assets/IDSDef_correct/identifiers/plasma_sources/plasma_source_identifier.xml +70 -0
  75. imas/assets/IDSDef_correct/identifiers/plasma_transport/plasma_transport_identifier.xml +38 -0
  76. imas/assets/IDSDef_correct/identifiers/radiation/radiation_identifier.xml +23 -0
  77. imas/assets/IDSDef_correct/identifiers/refractometer/refractometer_formula_identifier.xml +12 -0
  78. imas/assets/IDSDef_correct/identifiers/runaway_electrons/e_field_critical_identifier.xml +12 -0
  79. imas/assets/IDSDef_correct/identifiers/runaway_electrons/momentum_critical_avalanche_identifier.xml +11 -0
  80. imas/assets/IDSDef_correct/identifiers/runaway_electrons/momentum_critical_hot_tail_identifier.xml +11 -0
  81. imas/assets/IDSDef_correct/identifiers/spectrometer_visible/spectrometer_visible_method_identifier.xml +13 -0
  82. imas/assets/IDSDef_correct/identifiers/spectrometer_x_ray_crystal/crystal_mesh_identifier.xml +12 -0
  83. imas/assets/IDSDef_correct/identifiers/spectrometer_x_ray_crystal/spectro_x_instrument_function_identifier.xml +14 -0
  84. imas/assets/IDSDef_correct/identifiers/spi/shatter_cone_identifier.xml +11 -0
  85. imas/assets/IDSDef_correct/identifiers/utilities/coordinate_identifier.xml +51 -0
  86. imas/assets/IDSDef_correct/identifiers/utilities/curved_object_curvature_identifier.xml +16 -0
  87. imas/assets/IDSDef_correct/identifiers/utilities/curved_object_geometry_identifier.xml +14 -0
  88. imas/assets/IDSDef_correct/identifiers/utilities/data_type_identifier.xml +12 -0
  89. imas/assets/IDSDef_correct/identifiers/utilities/distribution_source_identifier.xml +36 -0
  90. imas/assets/IDSDef_correct/identifiers/utilities/emission_grid_identifier.xml +9 -0
  91. imas/assets/IDSDef_correct/identifiers/utilities/ggd_geometry_content_identifier.xml +21 -0
  92. imas/assets/IDSDef_correct/identifiers/utilities/ggd_identifier.xml +29 -0
  93. imas/assets/IDSDef_correct/identifiers/utilities/ggd_space_identifier.xml +18 -0
  94. imas/assets/IDSDef_correct/identifiers/utilities/ggd_subset_identifier.xml +70 -0
  95. imas/assets/IDSDef_correct/identifiers/utilities/materials_identifier.xml +43 -0
  96. imas/assets/IDSDef_correct/identifiers/utilities/midplane_identifier.xml +14 -0
  97. imas/assets/IDSDef_correct/identifiers/utilities/neutrals_identifier.xml +20 -0
  98. imas/assets/IDSDef_correct/identifiers/utilities/occurrence_type_identifier.xml +11 -0
  99. imas/assets/IDSDef_correct/identifiers/utilities/optical_element_identifier.xml +13 -0
  100. imas/assets/IDSDef_correct/identifiers/utilities/optical_element_material_identifier.xml +12 -0
  101. imas/assets/IDSDef_correct/identifiers/utilities/orbit_type_identifier.xml +20 -0
  102. imas/assets/IDSDef_correct/identifiers/utilities/poloidal_plane_coordinates_identifier.xml +119 -0
  103. imas/assets/IDSDef_correct/identifiers/utilities/species_reference_identifier.xml +19 -0
  104. imas/assets/IDSDef_correct/identifiers/utilities/statistics_type_identifier.xml +17 -0
  105. imas/assets/IDSDef_correct/identifiers/utilities/surface_geometry_identifier.xml +16 -0
  106. imas/assets/IDSDef_correct/identifiers/utilities/wave_identifier.xml +15 -0
  107. imas/assets/IDSDef_correct/identifiers/wall/wall_component_identifier.xml +18 -0
  108. imas/assets/IDSDef_correct/identifiers/wall/wall_description_2d_type_identifier.xml +13 -0
  109. imas/backends/netcdf/db_entry_nc.py +8 -0
  110. imas/backends/netcdf/ids2nc.py +13 -1
  111. imas/backends/netcdf/nc_validate.py +5 -4
  112. imas/ids_primitive.py +4 -1
  113. imas/test/test_cli.py +8 -2
  114. imas/test/test_dbentry.py +1 -1
  115. imas/test/test_helpers.py +22 -8
  116. imas/test/test_ids_toplevel.py +1 -1
  117. imas/test/test_minimal_types.py +11 -2
  118. imas/test/test_nbc_change.py +1 -1
  119. imas/test/test_nc_autofill.py +47 -2
  120. imas/test/test_static_ids.py +1 -1
  121. imas/test/test_util.py +3 -3
  122. {imas_python-0.1.dev1652.dist-info → imas_python-1.1.2.dev54.dist-info}/METADATA +2 -2
  123. imas_python-1.1.2.dev54.dist-info/RECORD +215 -0
  124. imas_python-0.1.dev1652.dist-info/RECORD +0 -109
  125. {imas_python-0.1.dev1652.dist-info → imas_python-1.1.2.dev54.dist-info}/LICENSE.txt +0 -0
  126. {imas_python-0.1.dev1652.dist-info → imas_python-1.1.2.dev54.dist-info}/WHEEL +0 -0
  127. {imas_python-0.1.dev1652.dist-info → imas_python-1.1.2.dev54.dist-info}/entry_points.txt +0 -0
  128. {imas_python-0.1.dev1652.dist-info → imas_python-1.1.2.dev54.dist-info}/top_level.txt +0 -0
imas/test/test_helpers.py CHANGED
@@ -93,7 +93,9 @@ def fill_with_random_data(structure, max_children=3):
93
93
  child.value = random_data(child.metadata.data_type, child.metadata.ndim)
94
94
 
95
95
 
96
- def maybe_set_random_value(primitive: IDSPrimitive, leave_empty: float) -> None:
96
+ def maybe_set_random_value(
97
+ primitive: IDSPrimitive, leave_empty: float, skip_complex: bool
98
+ ) -> None:
97
99
  """Set the value of an IDS primitive with a certain chance.
98
100
 
99
101
  If the IDSPrimitive has coordinates, then the size of the coordinates is taken into
@@ -153,7 +155,7 @@ def maybe_set_random_value(primitive: IDSPrimitive, leave_empty: float) -> None:
153
155
  # Scale chance of not setting a coordinate by our number of dimensions,
154
156
  # such that overall there is roughly a 50% chance that any coordinate
155
157
  # remains empty
156
- maybe_set_random_value(coordinate_element, 0.5**ndim)
158
+ maybe_set_random_value(coordinate_element, 0.5**ndim, skip_complex)
157
159
  size = coordinate_element.shape[0 if coordinate.references else dim]
158
160
 
159
161
  if coordinate.size: # coordinateX = <path> OR 1...1
@@ -176,13 +178,18 @@ def maybe_set_random_value(primitive: IDSPrimitive, leave_empty: float) -> None:
176
178
  elif primitive.metadata.data_type is IDSDataType.FLT:
177
179
  primitive.value = np.random.random_sample(size=shape)
178
180
  elif primitive.metadata.data_type is IDSDataType.CPX:
181
+ if skip_complex:
182
+ # If we are skipping complex numbers then leave the value empty.
183
+ return
179
184
  val = np.random.random_sample(shape) + 1j * np.random.random_sample(shape)
180
185
  primitive.value = val
181
186
  else:
182
187
  raise ValueError(f"Invalid IDS data type: {primitive.metadata.data_type}")
183
188
 
184
189
 
185
- def fill_consistent(structure: IDSStructure, leave_empty: float = 0.2):
190
+ def fill_consistent(
191
+ structure: IDSStructure, leave_empty: float = 0.2, skip_complex: bool = False
192
+ ):
186
193
  """Fill a structure with random data, such that coordinate sizes are consistent.
187
194
 
188
195
  Sets homogeneous_time to heterogeneous (always).
@@ -196,6 +203,9 @@ def fill_consistent(structure: IDSStructure, leave_empty: float = 0.2):
196
203
  exclusive_coordinates: list of IDSPrimitives that have exclusive alternative
197
204
  coordinates. These are initially not filled, and only at the very end of
198
205
  filling an IDSToplevel, a choice is made between the exclusive coordinates.
206
+ skip_complex: Whether to skip over populating complex numbers. This is
207
+ useful for maintaining compatibility with older versions of netCDF4
208
+ (<1.7.0) where complex numbers are not supported.
199
209
  """
200
210
  if isinstance(structure, IDSToplevel):
201
211
  unsupported_ids_name = (
@@ -218,7 +228,9 @@ def fill_consistent(structure: IDSStructure, leave_empty: float = 0.2):
218
228
 
219
229
  for child in structure:
220
230
  if isinstance(child, IDSStructure):
221
- exclusive_coordinates.extend(fill_consistent(child, leave_empty))
231
+ exclusive_coordinates.extend(
232
+ fill_consistent(child, leave_empty, skip_complex)
233
+ )
222
234
 
223
235
  elif isinstance(child, IDSStructArray):
224
236
  if child.metadata.coordinates[0].references:
@@ -230,7 +242,7 @@ def fill_consistent(structure: IDSStructure, leave_empty: float = 0.2):
230
242
  if isinstance(coor, IDSPrimitive):
231
243
  # maybe fill with random data:
232
244
  try:
233
- maybe_set_random_value(coor, leave_empty)
245
+ maybe_set_random_value(coor, leave_empty, skip_complex)
234
246
  except (RuntimeError, ValueError):
235
247
  pass
236
248
  child.resize(len(coor))
@@ -244,7 +256,9 @@ def fill_consistent(structure: IDSStructure, leave_empty: float = 0.2):
244
256
  else:
245
257
  child.resize(child.metadata.coordinates[0].size or 1)
246
258
  for ele in child:
247
- exclusive_coordinates.extend(fill_consistent(ele, leave_empty))
259
+ exclusive_coordinates.extend(
260
+ fill_consistent(ele, leave_empty, skip_complex)
261
+ )
248
262
 
249
263
  else: # IDSPrimitive
250
264
  coordinates = child.metadata.coordinates
@@ -256,7 +270,7 @@ def fill_consistent(structure: IDSStructure, leave_empty: float = 0.2):
256
270
  exclusive_coordinates.append(child)
257
271
  else:
258
272
  try:
259
- maybe_set_random_value(child, leave_empty)
273
+ maybe_set_random_value(child, leave_empty, skip_complex)
260
274
  except (RuntimeError, ValueError):
261
275
  pass
262
276
 
@@ -278,7 +292,7 @@ def fill_consistent(structure: IDSStructure, leave_empty: float = 0.2):
278
292
  coor = filled_refs.pop()
279
293
  unset_coordinate(coor)
280
294
 
281
- maybe_set_random_value(element, leave_empty)
295
+ maybe_set_random_value(element, leave_empty, skip_complex)
282
296
  else:
283
297
  return exclusive_coordinates
284
298
 
@@ -46,7 +46,7 @@ def test_pretty_print(ids):
46
46
  assert pprint.pformat(ids) == "<IDSToplevel (IDS:gyrokinetics)>"
47
47
 
48
48
 
49
- def test_serialize_nondefault_dd_version():
49
+ def test_serialize_nondefault_dd_version(requires_imas):
50
50
  ids = IDSFactory("3.31.0").core_profiles()
51
51
  fill_with_random_data(ids)
52
52
  data = ids.serialize()
@@ -1,5 +1,6 @@
1
1
  # A minimal testcase loading an IDS file and checking that the structure built is ok
2
2
  from numbers import Complex, Integral, Number, Real
3
+ from packaging import version
3
4
 
4
5
  import numpy as np
5
6
  import pytest
@@ -61,7 +62,11 @@ def test_assign_str_1d(minimal, caplog):
61
62
 
62
63
 
63
64
  # Prevent the expected numpy ComplexWarnings from cluttering pytest output
64
- @pytest.mark.filterwarnings("ignore::numpy.ComplexWarning")
65
+ @pytest.mark.filterwarnings(
66
+ "ignore::numpy.ComplexWarning"
67
+ if version.parse(np.__version__) < version.parse("1.25")
68
+ else "ignore::numpy.exceptions.ComplexWarning"
69
+ )
65
70
  @pytest.mark.parametrize("typ, max_dim", [("flt", 6), ("cpx", 6), ("int", 3)])
66
71
  def test_assign_numeric_types(minimal, caplog, typ, max_dim):
67
72
  caplog.set_level("INFO", "imas")
@@ -87,7 +92,11 @@ def test_assign_numeric_types(minimal, caplog, typ, max_dim):
87
92
  len(caplog.records) == 1
88
93
  elif dim == other_ndim >= 1 and other_typ == "cpx":
89
94
  # np allows casting of complex to float or int, but warns:
90
- with pytest.warns(np.ComplexWarning):
95
+ with pytest.warns(
96
+ np.ComplexWarning
97
+ if version.parse(np.__version__) < version.parse("1.25")
98
+ else np.exceptions.ComplexWarning
99
+ ):
91
100
  caplog.clear()
92
101
  minimal[name].value = value
93
102
  assert len(caplog.records) == 1
@@ -54,7 +54,7 @@ def test_nbc_structure_to_aos(caplog):
54
54
  assert caplog.record_tuples[0][:2] == ("imas.ids_convert", logging.WARNING)
55
55
 
56
56
 
57
- def test_nbc_0d_to_1d(caplog):
57
+ def test_nbc_0d_to_1d(caplog, requires_imas):
58
58
  # channel/filter_spectrometer/radiance_calibration in spectrometer visible changed
59
59
  # from FLT_0D to FLT_1D in DD 3.39.0
60
60
  ids = IDSFactory("3.32.0").spectrometer_visible()
@@ -1,11 +1,56 @@
1
1
  from imas.db_entry import DBEntry
2
+ from imas.exception import InvalidNetCDFEntry
2
3
  from imas.test.test_helpers import compare_children, fill_consistent
4
+ import re
5
+ import pytest
6
+ import netCDF4
7
+ from packaging import version
3
8
 
4
9
 
5
- def test_nc_latest_dd_autofill_put_get(ids_name, tmp_path):
10
+ def test_nc_latest_dd_autofill_put_get_skip_complex(ids_name, tmp_path):
6
11
  with DBEntry(f"{tmp_path}/test-{ids_name}.nc", "x") as entry:
7
12
  ids = entry.factory.new(ids_name)
8
- fill_consistent(ids, 0.5)
13
+ fill_consistent(ids, leave_empty=0.5, skip_complex=True)
14
+
15
+ entry.put(ids)
16
+ ids2 = entry.get(ids_name)
17
+
18
+ compare_children(ids, ids2)
19
+
20
+
21
+ @pytest.mark.skipif(
22
+ version.parse(netCDF4.__version__) >= version.parse("1.7.0"),
23
+ reason="NetCDF4 versions < 1.7.0 do not support complex numbers",
24
+ )
25
+ def test_nc_latest_dd_autofill_put_get_with_complex_older_netCDF4(
26
+ ids_name, tmp_path
27
+ ):
28
+ with DBEntry(f"{tmp_path}/test-{ids_name}.nc", "x") as entry:
29
+ ids = entry.factory.new(ids_name)
30
+ fill_consistent(ids, leave_empty=0.5, skip_complex=False)
31
+ try:
32
+ entry.put(ids)
33
+ ids2 = entry.get(ids_name)
34
+ compare_children(ids, ids2)
35
+ except InvalidNetCDFEntry as e:
36
+ # This is expected, as these versions of NetCDF4 do not support
37
+ # complex numbers.
38
+ if not re.search(
39
+ r".*NetCDF 1.7.0 or later is required for complex data types", str(e)
40
+ ):
41
+ raise InvalidNetCDFEntry(e) from e
42
+
43
+
44
+ @pytest.mark.skipif(
45
+ version.parse(netCDF4.__version__) < version.parse("1.7.0"),
46
+ reason="NetCDF4 versions >= 1.7.0 support complex numbers",
47
+ )
48
+ def test_nc_latest_dd_autofill_put_get_with_complex_newer_netCDF4(
49
+ ids_name, tmp_path
50
+ ):
51
+ with DBEntry(f"{tmp_path}/test-{ids_name}.nc", "x") as entry:
52
+ ids = entry.factory.new(ids_name)
53
+ fill_consistent(ids, leave_empty=0.5, skip_complex=False)
9
54
 
10
55
  entry.put(ids)
11
56
  ids2 = entry.get(ids_name)
@@ -21,7 +21,7 @@ def test_ids_valid_type():
21
21
  assert ids_types in ({IDSType.NONE}, {IDSType.CONSTANT, IDSType.DYNAMIC})
22
22
 
23
23
 
24
- def test_constant_ids(caplog):
24
+ def test_constant_ids(caplog, requires_imas):
25
25
  ids = imas.IDSFactory().new("amns_data")
26
26
  if ids.metadata.type is IDSType.NONE:
27
27
  pytest.skip("IDS definition has no constant IDSs")
imas/test/test_util.py CHANGED
@@ -54,7 +54,7 @@ def test_inspect():
54
54
  inspect(cp.profiles_1d[1].grid.rho_tor_norm) # IDSPrimitive
55
55
 
56
56
 
57
- def test_inspect_lazy():
57
+ def test_inspect_lazy(requires_imas):
58
58
  with get_training_db_entry() as entry:
59
59
  cp = entry.get("core_profiles", lazy=True)
60
60
  inspect(cp)
@@ -141,7 +141,7 @@ def test_idsdiffgen():
141
141
  assert diff[0] == ("profiles_1d/time", -1, 0)
142
142
 
143
143
 
144
- def test_idsdiff():
144
+ def test_idsdiff(requires_imas):
145
145
  # Test the diff rendering for two sample IDSs
146
146
  with get_training_db_entry() as entry:
147
147
  imas.util.idsdiff(entry.get("core_profiles"), entry.get("equilibrium"))
@@ -179,7 +179,7 @@ def test_get_toplevel():
179
179
  assert get_toplevel(cp) is cp
180
180
 
181
181
 
182
- def test_is_lazy_loaded():
182
+ def test_is_lazy_loaded(requires_imas):
183
183
  with get_training_db_entry() as entry:
184
184
  assert is_lazy_loaded(entry.get("core_profiles")) is False
185
185
  assert is_lazy_loaded(entry.get("core_profiles", lazy=True)) is True
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.2
2
2
  Name: imas-python
3
- Version: 0.1.dev1652
3
+ Version: 1.1.2.dev54
4
4
  Summary: Pythonic wrappers for the IMAS Access Layer
5
5
  Author: ITER Organization
6
6
  Author-email: Karel Lucas van de Plassche <karelvandeplassche@gmail.com>, Daan van Vugt <dvanvugt@ignitioncomputing.com>, Maarten Sebregts <msebregts@ignitioncomputing.com>, imas-support@iter.org
@@ -222,7 +222,7 @@ Requires-Dist: sphinx-autosummary-accessors>=0.1.2; extra == "docs"
222
222
  Requires-Dist: sphinx-immaterial<0.12,>=0.11.0; extra == "docs"
223
223
  Requires-Dist: sphinx-click; extra == "docs"
224
224
  Provides-Extra: netcdf
225
- Requires-Dist: netCDF4>=1.7.0; extra == "netcdf"
225
+ Requires-Dist: netCDF4>=1.4.1; extra == "netcdf"
226
226
  Provides-Extra: h5py
227
227
  Requires-Dist: h5py; extra == "h5py"
228
228
  Provides-Extra: test
@@ -0,0 +1,215 @@
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+ imas/__main__.py,sha256=2qXoC0HzV4xkPQAvdubHC4rnK3G6f_2PT9TkkCHYXk8,418
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+ imas/db_entry.py,sha256=OnAgz0c97gbEizrDcuO909VFUzOzeU1OIwWe50PCCxw,31755
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+ imas/ids_convert.py,sha256=OixW99Gpm77n0wj2RwlasFP_jzAN_wozrlCn_BtkbvM,38548
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