imap-processing 0.18.0__py3-none-any.whl → 0.19.2__py3-none-any.whl

imap_processing/glows/ancillary/imap_glows_suspected-transients_20250923_v002.dat

@@ -0,0 +1,10 @@
+# Description: list of transients for L1b defined by IMAP/GLOWS Instrument Team for ground-processing pipeline in the IMAP SDC
+# Value 1 in mask_array means that a given bin is suspected transient
+# version: 0.2
+# columns: l1b_unique_block_identifier, histogram_mask_array
+2013-09-08T09:46:14 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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imap_processing/glows/l1b/glows_l1b.py

@@ -1,16 +1,32 @@
 """Methods for processing GLOWS L1B data."""
 
 import dataclasses
+import json
+from pathlib import Path
 
 import numpy as np
 import xarray as xr
 
 from imap_processing.cdf.imap_cdf_manager import ImapCdfAttributes
 from imap_processing.glows import FLAG_LENGTH
-from imap_processing.glows.l1b.glows_l1b_data import DirectEventL1B, HistogramL1B
-
-
-def glows_l1b(input_dataset: xr.Dataset) -> xr.Dataset:
+from imap_processing.glows.l1b.glows_l1b_data import (
+    AncillaryExclusions,
+    AncillaryParameters,
+    DirectEventL1B,
+    HistogramL1B,
+    PipelineSettings,
+)
+from imap_processing.spice.time import et_to_datetime64, ttj2000ns_to_et
+
+
+def glows_l1b(
+    input_dataset: xr.Dataset,
+    excluded_regions: xr.Dataset,
+    uv_sources: xr.Dataset,
+    suspected_transients: xr.Dataset,
+    exclusions_by_instr_team: xr.Dataset,
+    pipeline_settings_dataset: xr.Dataset,
+) -> xr.Dataset:
     """
     Will process the GLOWS L1B data and format the output datasets.
 
@@ -18,6 +34,21 @@ def glows_l1b(input_dataset: xr.Dataset) -> xr.Dataset:
     ----------
     input_dataset : xr.Dataset
         Dataset of input values.
+    excluded_regions : xr.Dataset
+        Dataset containing excluded sky regions with ecliptic coordinates. This
+        is the output from GlowsAncillaryCombiner.
+    uv_sources : xr.Dataset
+        Dataset containing UV sources (stars) with coordinates and masking radii. It is
+        the output from GlowsAncillaryCombiner.
+    suspected_transients : xr.Dataset
+        Dataset containing suspected transient signals with time-based masks. This is
+        the output from GlowsAncillaryCombiner.
+    exclusions_by_instr_team : xr.Dataset
+        Dataset containing manual exclusions by instrument team with time-based masks.
+        This is the output from GlowsAncillaryCombiner.
+    pipeline_settings_dataset : xr.Dataset
+        Dataset containing pipeline settings, including the L1B conversion table and
+        other ancillary parameters.
 
     Returns
     -------
@@ -28,6 +59,24 @@ def glows_l1b(input_dataset: xr.Dataset) -> xr.Dataset:
     cdf_attrs.add_instrument_global_attrs("glows")
     cdf_attrs.add_instrument_variable_attrs("glows", "l1b")
 
+    day = et_to_datetime64(ttj2000ns_to_et(input_dataset["epoch"].data[0]))
+
+    # Create ancillary exclusions object from passed-in datasets
+    ancillary_exclusions = AncillaryExclusions(
+        excluded_regions=excluded_regions,
+        uv_sources=uv_sources,
+        suspected_transients=suspected_transients,
+        exclusions_by_instr_team=exclusions_by_instr_team,
+    )
+    pipeline_settings = PipelineSettings(
+        pipeline_settings_dataset.sel(epoch=day, method="nearest"),
+    )
+
+    with open(
+        Path(__file__).parents[1] / "ancillary" / "l1b_conversion_table_v001.json"
+    ) as f:
+        ancillary_parameters = AncillaryParameters(json.loads(f.read()))
+
     logical_source = (
         input_dataset.attrs["Logical_source"][0]
         if isinstance(input_dataset.attrs["Logical_source"], list)
@@ -35,7 +84,12 @@ def glows_l1b(input_dataset: xr.Dataset) -> xr.Dataset:
     )
 
     if "hist" in logical_source:
-        output_dataset = create_l1b_hist_output(input_dataset, cdf_attrs)
+        output_dataarrays = process_histogram(
+            input_dataset, ancillary_exclusions, ancillary_parameters, pipeline_settings
+        )
+        output_dataset = create_l1b_hist_output(
+            output_dataarrays, input_dataset["epoch"], input_dataset["bins"], cdf_attrs
+        )
 
     elif "de" in logical_source:
         output_dataset = create_l1b_de_output(input_dataset, cdf_attrs)
@@ -114,7 +168,12 @@ def process_de(l1a: xr.Dataset) -> tuple[xr.DataArray]:
     return l1b_fields
 
 
-def process_histogram(l1a: xr.Dataset) -> xr.Dataset:
+def process_histogram(
+    l1a: xr.Dataset,
+    ancillary_exclusions: AncillaryExclusions,
+    ancillary_parameters: AncillaryParameters,
+    pipeline_settings: PipelineSettings,
+) -> xr.Dataset:
     """
     Will process the histogram data from the L1A dataset and return the L1B dataset.
 
@@ -128,6 +187,12 @@ def process_histogram(l1a: xr.Dataset) -> xr.Dataset:
     ----------
     l1a : xr.Dataset
         The L1A dataset to process.
+    ancillary_exclusions : AncillaryExclusions
+        The ancillary exclusions data for bad-angle flag processing.
+    ancillary_parameters : AncillaryParameters
+        The ancillary parameters for decoding histogram data.
+    pipeline_settings : PipelineSettings
+        The pipeline settings including flag activation.
 
     Returns
     -------
@@ -149,6 +214,8 @@ def process_histogram(l1a: xr.Dataset) -> xr.Dataset:
         "spacecraft_location_std_dev": ["ecliptic"],
         "spacecraft_velocity_average": ["ecliptic"],
         "spacecraft_velocity_std_dev": ["ecliptic"],
+        "spin_axis_orientation_average": ["latitudinal"],
+        "spin_axis_orientation_std_dev": ["latitudinal"],
         "flags": ["flag_dim"],
     }
 
@@ -165,8 +232,27 @@ def process_histogram(l1a: xr.Dataset) -> xr.Dataset:
     # The rest of the input vars are epoch only, so they have an empty list.
     input_dims[0] = ["bins"]
 
+    # Create a closure that captures the ancillary objects
+    def create_histogram_l1b(*args) -> tuple:  # type: ignore[no-untyped-def]
+        """
+        Create HistogramL1B object with captured ancillary data.
+
+        Parameters
+        ----------
+        *args
+            Variable arguments passed from xr.apply_ufunc containing L1A data.
+
+        Returns
+        -------
+        tuple
+            Tuple of processed L1B data arrays from HistogramL1B.output_data().
+        """
+        return HistogramL1B(  # type: ignore[call-arg]
+            *args, ancillary_exclusions, ancillary_parameters, pipeline_settings
+        ).output_data()
+
     l1b_fields = xr.apply_ufunc(
-        lambda *args: HistogramL1B(*args).output_data(),
+        create_histogram_l1b,
         *dataarrays,
         input_core_dims=input_dims,
         output_core_dims=output_dims,
@@ -179,19 +265,30 @@ def process_histogram(l1a: xr.Dataset) -> xr.Dataset:
 
 
 def create_l1b_hist_output(
-    input_dataset: xr.Dataset, cdf_attrs: ImapCdfAttributes
+    l1b_dataarrays: tuple[xr.DataArray],
+    epoch: xr.DataArray,
+    bin_coord: xr.DataArray,
+    cdf_attrs: ImapCdfAttributes,
 ) -> xr.Dataset:
     """
     Create the output dataset for the L1B histogram data.
 
-    This function processes the input dataset and creates a new dataset with the
-    appropriate attributes and data variables. It uses the `process_histogram` function
-    to process the histogram data.
+    This function takes in the output from `process_histogram`, which is a tuple of
+    DataArrays matching the output L1B data variables, and assembles them into a
+    Dataset with the appropriate coordinates.
 
     Parameters
     ----------
-    input_dataset : xr.Dataset
-        The input L1A GLOWS Histogram dataset to process.
+    l1b_dataarrays : tuple[xr.DataArray]
+        The DataArrays for each variable in the L1B dataset. These align with the
+        fields in the HistogramL1B dataclass, which also describes each variable.
+    epoch : xr.DataArray
+        The epoch DataArray to use as a coordinate in the output dataset. Generally
+        equal to the L1A epoch.
+    bin_coord : xr.DataArray
+        An arange DataArray for the bins coordinate. Nominally expected to be equal to
+        `xr.DataArray(np.arange(number_of_bins_per_histogram), name="bins",
+        dims=["bins"])`. Pulled up from L1A.
     cdf_attrs : ImapCdfAttributes
         The CDF attributes to use for the output dataset.
 
@@ -200,7 +297,7 @@ def create_l1b_hist_output(
     output_dataset : xr.Dataset
         The output dataset with the processed histogram data and all attributes.
     """
-    data_epoch = input_dataset["epoch"]
+    data_epoch = epoch
     data_epoch.attrs = cdf_attrs.get_variable_attributes("epoch", check_schema=False)
 
     flag_data = xr.DataArray(
@@ -230,8 +327,17 @@ def create_l1b_hist_output(
         attrs=cdf_attrs.get_variable_attributes("ecliptic_attrs", check_schema=False),
     )
 
+    latitudinal_data = xr.DataArray(
+        np.arange(2),
+        name="latitudinal",
+        dims=["latitudinal"],
+        attrs=cdf_attrs.get_variable_attributes(
+            "latitudinal_attrs", check_schema=False
+        ),
+    )
+
     bin_data = xr.DataArray(
-        input_dataset["bins"].data,
+        bin_coord.data,
         name="bins",
         dims=["bins"],
         attrs=cdf_attrs.get_variable_attributes("bins_attrs", check_schema=False),
@@ -244,8 +350,6 @@ def create_l1b_hist_output(
         attrs=cdf_attrs.get_variable_attributes("bins_label", check_schema=False),
     )
 
-    output_dataarrays = process_histogram(input_dataset)
-
     output_dataset = xr.Dataset(
         coords={
             "epoch": data_epoch,
@@ -254,6 +358,7 @@ def create_l1b_hist_output(
             "bad_angle_flags": bad_flag_data,
             "bad_time_flags": flag_data,
             "ecliptic": eclipic_data,
+            "latitudinal": latitudinal_data,
         },
         attrs=cdf_attrs.get_global_attributes("imap_glows_l1b_hist"),
     )
@@ -262,7 +367,7 @@ def create_l1b_hist_output(
     # HistogramL1B dataclass, we can use dataclasses.fields to get the field names.
 
     fields = dataclasses.fields(HistogramL1B)
-    for index, dataarray in enumerate(output_dataarrays):
+    for index, dataarray in enumerate(l1b_dataarrays):
         # Dataarray is already an xr.DataArray type, so we can just assign it
         output_dataset[fields[index].name] = dataarray
         output_dataset[fields[index].name].attrs = cdf_attrs.get_variable_attributes(