imap-processing 0.11.0__py3-none-any.whl → 0.12.0__py3-none-any.whl

imap_processing/tests/mag/test_mag_validation.py

@@ -3,10 +3,14 @@ from pathlib import Path
 import numpy as np
 import pandas as pd
 import pytest
+import xarray as xr
 
+from imap_processing.cdf.utils import load_cdf
 from imap_processing.mag.l1a.mag_l1a import mag_l1a
-from imap_processing.mag.l1a.mag_l1a_data import TimeTuple
+from imap_processing.mag.l1a.mag_l1a_data import MagL1a, TimeTuple
 from imap_processing.mag.l1b.mag_l1b import mag_l1b
+from imap_processing.spice.time import str_to_et, ttj2000ns_to_et
+from imap_processing.tests.mag.conftest import mag_l1a_dataset_generator
 
 
 @pytest.mark.parametrize(
@@ -26,6 +30,7 @@ def test_mag_l1a_validation(test_number):
     secondary = mag_l1a_out[2]
 
     assert len(mag_l1a_out) == 3
+
     for index in expected_output.index:
         assert expected_output["x_pri"].iloc[index] == primary["vectors"].data[index][0]
         assert expected_output["y_pri"].iloc[index] == primary["vectors"].data[index][1]
@@ -48,10 +53,10 @@ def test_mag_l1a_validation(test_number):
             == secondary["vectors"].data[index][3]
         )
 
-        assert expected_output["pri_coarse"].iloc[index] == raw["PRI_COARSETM"].data[0]
-        assert expected_output["pri_fine"].iloc[index] == raw["PRI_FNTM"].data[0]
-        assert expected_output["sec_coarse"].iloc[index] == raw["SEC_COARSETM"].data[0]
-        assert expected_output["sec_fine"].iloc[index] == raw["SEC_FNTM"].data[0]
+        assert expected_output["pri_coarse"].iloc[index] == raw["pri_coarsetm"].data[0]
+        assert expected_output["pri_fine"].iloc[index] == raw["pri_fntm"].data[0]
+        assert expected_output["sec_coarse"].iloc[index] == raw["sec_coarsetm"].data[0]
+        assert expected_output["sec_fine"].iloc[index] == raw["sec_fntm"].data[0]
 
         expected_pri_time = TimeTuple(
             expected_output["pri_coarse"].iloc[index],
@@ -89,14 +94,64 @@ def test_mag_l1a_validation(test_number):
             )
 
 
-@pytest.mark.xfail(reason="Some bug somewhere")
-@pytest.mark.parametrize(("test_number"), ["009", "010", "011"])
+@pytest.mark.parametrize(("test_number"), ["009", "010", "011", "012"])
 def test_mag_l1b_validation(test_number):
     source_directory = Path(__file__).parent / "validation" / "L1b" / f"T{test_number}"
-    mag_l1a_input = mag_l1a(source_directory / "data.bin", "v000")
-
-    mago = mag_l1b(mag_l1a_input[1], "v000")
-    magi = mag_l1b(mag_l1a_input[2], "v000")
+    cdf_file = source_directory / f"mag-l1a-l1b-t{test_number}-cal.cdf"
+    calibration_input = None
+    if cdf_file.exists():
+        calibration_input = load_cdf(cdf_file)
+
+    input_mag_l1a = pd.read_csv(source_directory / f"mag-l1a-l1b-t{test_number}-in.csv")
+
+    mag_l1a_mago = mag_l1a_dataset_generator(len(input_mag_l1a.index))
+    mag_l1a_magi = mag_l1a_dataset_generator(len(input_mag_l1a.index))
+
+    mago_vectors = np.zeros((len(input_mag_l1a.index), 4), dtype=np.int64)
+    magi_vectors = np.zeros((len(input_mag_l1a.index), 4), dtype=np.int64)
+    compression_flags = np.zeros((len(input_mag_l1a.index), 2))
+    for index in input_mag_l1a.index:
+        mago_vectors[index] = [
+            input_mag_l1a["x_pri"].iloc[index],
+            input_mag_l1a["y_pri"].iloc[index],
+            input_mag_l1a["z_pri"].iloc[index],
+            input_mag_l1a["rng_pri"].iloc[index],
+        ]
+        magi_vectors[index] = [
+            input_mag_l1a["x_sec"].iloc[index],
+            input_mag_l1a["y_sec"].iloc[index],
+            input_mag_l1a["z_sec"].iloc[index],
+            input_mag_l1a["rng_sec"].iloc[index],
+        ]
+        compression_flags[index] = [
+            input_mag_l1a["compression"].iloc[index],
+            input_mag_l1a["compression_width_bits"].iloc[index],
+        ]
+
+    mag_l1a_mago["vectors"].data = mago_vectors
+    mag_l1a_magi["vectors"].data = magi_vectors
+
+    mag_l1a_magi.attrs["Logical_source"] = "imap_mag_l1a_norm-magi"
+
+    mago_epoch = MagL1a.calculate_vector_time(
+        mago_vectors,
+        2,
+        TimeTuple(input_mag_l1a["pri_coarse"][0], input_mag_l1a["pri_fine"][0]),
+    )[:, -1]
+    magi_epoch = MagL1a.calculate_vector_time(
+        magi_vectors,
+        2,
+        TimeTuple(input_mag_l1a["sec_coarse"][0], input_mag_l1a["sec_fine"][0]),
+    )[:, -1]
+
+    mag_l1a_mago.coords["epoch"] = xr.DataArray(mago_epoch)
+    mag_l1a_magi.coords["epoch"] = xr.DataArray(magi_epoch)
+
+    mag_l1a_mago["compression_flags"].data = compression_flags
+    mag_l1a_magi["compression_flags"].data = compression_flags
+
+    mago = mag_l1b(mag_l1a_mago, "v000", calibration_input)
+    magi = mag_l1b(mag_l1a_magi, "v000", calibration_input)
 
     expected_mago = pd.read_csv(
         source_directory / f"mag-l1a-l1b-t{test_number}-mago-out.csv"
@@ -107,42 +162,71 @@ def test_mag_l1b_validation(test_number):
 
     for index in expected_magi.index:
         assert np.allclose(
-            expected_magi["x"].iloc[index], magi["vectors"].data[index][0], atol=1e-9
+            expected_magi["x"].iloc[index],
+            magi["vectors"].data[index][0],
+            atol=1e-9,
+            rtol=0,
         )
         assert np.allclose(
-            expected_magi["y"].iloc[index], magi["vectors"].data[index][1], atol=1e-9
+            expected_magi["y"].iloc[index],
+            magi["vectors"].data[index][1],
+            atol=1e-9,
+            rtol=0,
         )
         assert np.allclose(
-            expected_magi["z"].iloc[index], magi["vectors"].data[index][2], atol=1e-9
+            expected_magi["z"].iloc[index],
+            magi["vectors"].data[index][2],
+            atol=1e-9,
+            rtol=0,
         )
         assert expected_magi["range"].iloc[index] == magi["vectors"].data[index][3]
         assert (
             expected_magi["compression"].iloc[index]
             == magi["compression_flags"].data[index][0]
         )
-        assert (
-            expected_magi["compression_width"].iloc[index]
-            == magi["compression_flags"].data[index][1]
-        )
+        if expected_magi["compression"].iloc[index] != 0:
+            assert (
+                expected_magi["compression_width"].iloc[index]
+                == magi["compression_flags"].data[index][1]
+            )
+
+        expected_time = str_to_et(expected_magi["t"].iloc[index])
+        magi_time = ttj2000ns_to_et(magi["epoch"].data[index])
+
+        assert np.allclose(expected_time, magi_time, atol=1e-6, rtol=0)
 
     for index in expected_mago.index:
         # TODO: come back to timestamp.
         # Can't compare UTC, coarse/fine don't work.
         assert np.allclose(
-            expected_mago["x"].iloc[index], mago["vectors"].data[index][0], atol=1e-9
+            expected_mago["x"].iloc[index],
+            mago["vectors"].data[index][0],
+            atol=1e-9,
+            rtol=0,
         )
         assert np.allclose(
-            expected_mago["y"].iloc[index], mago["vectors"].data[index][1], atol=1e-9
+            expected_mago["y"].iloc[index],
+            mago["vectors"].data[index][1],
+            atol=1e-9,
+            rtol=0,
         )
         assert np.allclose(
-            expected_mago["z"].iloc[index], mago["vectors"].data[index][2], atol=1e-9
+            expected_mago["z"].iloc[index],
+            mago["vectors"].data[index][2],
+            atol=1e-9,
+            rtol=0,
         )
         assert expected_mago["range"].iloc[index] == mago["vectors"].data[index][3]
         assert (
             expected_mago["compression"].iloc[index]
             == mago["compression_flags"].data[index][0]
         )
-        assert (
-            expected_mago["compression_width"].iloc[index]
-            == mago["compression_flags"].data[index][1]
-        )
+        if expected_mago["compression"].iloc[index] != 0:
+            assert (
+                expected_mago["compression_width"].iloc[index]
+                == mago["compression_flags"].data[index][1]
+            )
+
+        expected_time = str_to_et(expected_mago["t"].iloc[index])
+        mago_time = ttj2000ns_to_et(mago["epoch"].data[index])
+        assert np.allclose(expected_time, mago_time, atol=1e-6, rtol=0)

imap_processing/tests/mag/validation/L1b/T009/MAGScience-normal-(2,2)-8s-20250204-16h39.csv

@@ -0,0 +1,17 @@
+sequence,x_pri,y_pri,z_pri,rng_pri,x_sec,y_sec,z_sec,rng_sec,pri_coarse,pri_fine,sec_coarse,sec_fine,compression,compression_width_bits
+15,157,-499,-272,3,203,-205,-193,2,476383107,64352,476383107,64354,1,18
+15,148,-473,-276,3,213,-283,-186,2,476383107,64352,476383107,64354,1,18
+15,98,-312,-170,3,220,-326,-179,2,476383107,64352,476383107,64354,1,18
+15,-4,4,17,0,235,-376,-240,3,476383107,64352,476383107,64354,1,18
+15,7,-16,31,0,149,-425,-284,3,476383107,64352,476383107,64354,1,18
+15,28,-39,-16,0,100,-486,-264,3,476383107,64352,476383107,64354,1,18
+15,3,-53,-2,0,167,-497,-279,3,476383107,64352,476383107,64354,1,18
+15,-6,-78,22,0,139,-460,-267,3,476383107,64352,476383107,64354,1,18
+15,49,-104,32,1,63,-186,-94,0,476383107,64352,476383107,64354,1,18
+15,36,-129,21,1,-10,15,25,0,476383107,64352,476383107,64354,1,18
+15,68,-103,-12,1,14,-31,22,0,476383107,64352,476383107,64354,1,18
+15,115,-135,-59,1,29,-41,-20,0,476383107,64352,476383107,64354,1,18
+15,162,-213,-111,1,-8,-60,7,0,476383107,64352,476383107,64354,1,18
+15,186,-206,-167,2,9,-84,26,1,476383107,64352,476383107,64354,1,18
+15,201,-194,-196,2,53,-118,33,1,476383107,64352,476383107,64354,1,18
+15,212,-257,-191,2,36,-121,13,1,476383107,64352,476383107,64354,1,18

imap_processing/tests/mag/validation/L1b/T009/mag-l1a-l1b-t009-magi-out.csv

@@ -1,17 +1,17 @@
 t,coarse,fine,sequence,x,y,z,range,compression,compression_width
-2025-02-04T16:38:27.981979,476383107,64354,15,0.95542504596,-0.94791461247,-0.884626055955,2,1,18
-2025-02-04T16:38:28.481979,476383107,64354,15,1.00249031916,-1.30810804533,-0.85028532705,2,1,18
-2025-02-04T16:38:28.981979,476383107,64354,15,1.0354360104,-1.50668675937,-0.816826842585,2,1,18
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+2025-02-04T16:38:29.981979,476383107,64354,15,7.96381468743,-17.358231791085,12.447504304605,0,1,18
+2025-02-04T16:38:30.481979,476383107,64354,15,16.496473281105,-22.96778973681,-11.066117873445,0,1,18
+2025-02-04T16:38:30.981979,476383107,64354,15,-4.55075124996,-33.56267110866,4.09207388463,0,1,18
+2025-02-04T16:38:31.481979,476383107,64354,15,0.165955554,-1.517995728,0.478387692,1,1,18
+2025-02-04T16:38:31.981979,476383107,64354,15,0.977293818,-2.133706896,0.609742854,1,1,18
+2025-02-04T16:38:32.481979,476383107,64354,15,0.663822216,-2.187369792,0.247695228,1,1,18

imap_processing/tests/mag/validation/L1b/T009/mag-l1a-l1b-t009-mago-out.csv

@@ -1,17 +1,17 @@
 t,coarse,fine,sequence,x,y,z,range,compression,compression_width
-2025-02-04T16:38:27.981948,476383107,64352,15,0.1804626032025,-0.562105854075,-0.3036826507575,3,1,18
-2025-02-04T16:38:28.481948,476383107,64352,15,0.17011761321,-0.53281880385,-0.30834684861,3,1,18
-2025-02-04T16:38:28.981948,476383107,64352,15,0.112645446585,-0.35145717345,-0.189801018135,3,1,18
-2025-02-04T16:38:29.481948,476383107,64352,15,-2.29722020166,2.23454254428,9.55399882842,0,1,18
-2025-02-04T16:38:29.981948,476383107,64352,15,4.020135352905,-8.94601423008,17.46477430263,0,1,18
-2025-02-04T16:38:30.481948,476383107,64352,15,16.08054141162,-21.79637698257,-8.928932800755,0,1,18
-2025-02-04T16:38:30.981948,476383107,64352,15,1.722915151245,-29.65126678371,-1.008913007595,0,1,18
-2025-02-04T16:38:31.481948,476383107,64352,15,-3.44583030249,-43.64679077442,12.54925750059,0,1,18
-2025-02-04T16:38:31.981948,476383107,64352,15,0.904295196,-1.88049375,0.585438228,1,1,18
-2025-02-04T16:38:32.481948,476383107,64352,15,0.664380144,-2.333212128,0.388430856,1,1,18
-2025-02-04T16:38:32.981948,476383107,64352,15,1.254940272,-1.8618804,-0.211248648,1,1,18
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-2025-02-04T16:38:34.981948,476383107,64352,15,0.94711132062,-0.894849188085,-0.903518102745,2,1,18
-2025-02-04T16:38:35.481948,476383107,64352,15,0.99894328344,-1.185887030445,-0.879318758475,2,1,18
+2025-02-04T16:38:24.981948,476383107,64352,15,0.1804626032025,-0.562105854075,-0.3036826507575,3,1,18
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+2025-02-04T16:38:30.481948,476383107,64352,15,2.12232546,-2.43962217,-1.060461756,1,1,18
+2025-02-04T16:38:30.981948,476383107,64352,15,2.989710648,-3.849712596,-1.99688544,1,1,18
+2025-02-04T16:38:31.481948,476383107,64352,15,0.87643137132,-0.95042434446,-0.769179598785,2,1,18
+2025-02-04T16:38:31.981948,476383107,64352,15,0.94711132062,-0.894849188085,-0.903518102745,2,1,18
+2025-02-04T16:38:32.481948,476383107,64352,15,0.99894328344,-1.185887030445,-0.879318758475,2,1,18

imap_processing/tests/mag/validation/L1b/T010/MAGScience-normal-(2,2)-8s-20250206-12h05.csv

@@ -0,0 +1,17 @@
+sequence,x_pri,y_pri,z_pri,rng_pri,x_sec,y_sec,z_sec,rng_sec,pri_coarse,pri_fine,sec_coarse,sec_fine,compression,compression_width_bits
+4,25,-122,-66,3,24,-122,-66,3,476539141,64608,476539141,64610,1,16
+4,41,-125,-70,3,41,-125,-70,3,476539141,64608,476539141,64610,1,16
+4,34,-115,-67,3,35,-116,-67,3,476539141,64608,476539141,64610,1,16
+4,15,-47,-24,0,16,-50,-26,0,476539141,64608,476539141,64610,1,16
+4,-3,3,6,0,-3,3,6,0,476539141,64608,476539141,64610,1,16
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