iints-sdk-python35 1.5.0__py3-none-any.whl → 1.5.2__py3-none-any.whl

iints/__init__.py

@@ -11,11 +11,18 @@ except ImportError:  # pragma: no cover - Python < 3.8 fallback
 try:
     __version__ = version("iints-sdk-python35")
 except PackageNotFoundError:  # pragma: no cover - source tree fallback
-    __version__ = "1.5.0"
+    __version__ = "1.5.2"
 
 # Note to developers: this SDK is currently maintained by a single author.
 # Please report bugs via GitHub issues and feel free to contribute fixes via PRs.
 
+
+def _missing_reports_dependency(feature: str, exc: Exception) -> None:
+    raise ImportError(
+        f"{feature} requires the optional reporting stack. Install "
+        f"'iints-sdk-python35[reports]' or 'iints-sdk-python35[full]'."
+    ) from exc
+
 # API Components for Algorithm Development
 from .api.base_algorithm import (
     InsulinAlgorithm,
@@ -70,16 +77,60 @@ from .data.nightscout import NightscoutConfig, import_nightscout
 from .data.tidepool import TidepoolClient, load_openapi_spec
 from .data.guardians import mdmp_gate, MDMPGateError
 from .data.synthetic_mirror import generate_synthetic_mirror, SyntheticMirrorArtifact
+from .data.study_corruption import AVAILABLE_STUDY_CORRUPTIONS, apply_study_corruptions, write_corrupted_study_csv
 from .analysis.metrics import generate_benchmark_metrics # Added for benchmark
-from .analysis.booth_demo import build_booth_demo
-from .analysis.carelink_workbench import build_carelink_workbench
-from .analysis.poster import generate_results_poster
-from .analysis.reporting import ClinicalReportGenerator
+from .analysis.study_protocol import build_study_protocol_payload, render_study_protocol_markdown, write_study_protocol_bundle
 from .analysis.edge_efficiency import EnergyEstimate, estimate_energy_per_decision
 from .ai import AIResponse, IINTSAssistant, MDMPGuard
+from .live_patient import (
+    create_edge_bundle,
+    export_edge_setup,
+    LivePatientDaemon,
+    PatientRuntimeConfig,
+    create_patient_app,
+    export_uno_q_bridge,
+    get_runtime_scenario_profile,
+    list_runtime_scenario_profiles,
+    run_edge_benchmark,
+    summarize_edge_workspace,
+    write_edge_update_script,
+)
 from .highlevel import run_simulation, run_full, run_population
 from .scenarios import ScenarioGeneratorConfig, generate_random_scenario
 
+try:
+    from .analysis.booth_demo import build_booth_demo
+except Exception as exc:  # pragma: no cover - optional reports stack
+    _build_booth_demo_exc = exc
+
+    def build_booth_demo(*args, **kwargs):  # type: ignore[misc,no-redef]
+        _missing_reports_dependency("build_booth_demo()", _build_booth_demo_exc)
+
+try:
+    from .analysis.carelink_workbench import build_carelink_workbench
+except Exception as exc:  # pragma: no cover - optional reports stack
+    _build_carelink_workbench_exc = exc
+
+    def build_carelink_workbench(*args, **kwargs):  # type: ignore[misc,no-redef]
+        _missing_reports_dependency("build_carelink_workbench()", _build_carelink_workbench_exc)
+
+try:
+    from .analysis.poster import generate_results_poster
+except Exception as exc:  # pragma: no cover - optional reports stack
+    _generate_results_poster_exc = exc
+
+    def generate_results_poster(*args, **kwargs):  # type: ignore[misc,no-redef]
+        _missing_reports_dependency("generate_results_poster()", _generate_results_poster_exc)
+
+try:
+    from .analysis.reporting import ClinicalReportGenerator
+except Exception as exc:  # pragma: no cover - optional reports stack
+    _clinical_report_generator_exc = exc
+
+    class ClinicalReportGenerator:  # type: ignore[no-redef]
+        def __init__(self, *args, **kwargs):
+            _missing_reports_dependency("ClinicalReportGenerator", _clinical_report_generator_exc)
+
 # Population testing
 from .population import (
     PopulationGenerator,
@@ -184,16 +235,33 @@ __all__ = [
     "MDMPGateError",
     "generate_synthetic_mirror",
     "SyntheticMirrorArtifact",
+    "AVAILABLE_STUDY_CORRUPTIONS",
+    "apply_study_corruptions",
+    "write_corrupted_study_csv",
     # Analysis Metrics
     "generate_benchmark_metrics",
     "build_booth_demo",
     "build_carelink_workbench",
+    "build_study_protocol_payload",
+    "render_study_protocol_markdown",
+    "write_study_protocol_bundle",
     "ClinicalReportGenerator",
     "EnergyEstimate",
     "estimate_energy_per_decision",
     "AIResponse",
     "IINTSAssistant",
     "MDMPGuard",
+    "create_edge_bundle",
+    "export_edge_setup",
+    "LivePatientDaemon",
+    "PatientRuntimeConfig",
+    "create_patient_app",
+    "export_uno_q_bridge",
+    "get_runtime_scenario_profile",
+    "list_runtime_scenario_profiles",
+    "run_edge_benchmark",
+    "summarize_edge_workspace",
+    "write_edge_update_script",
     # Reporting
     "generate_report",
     "generate_quickstart_report",

iints/ai/cli.py

@@ -70,6 +70,15 @@ def _resolve_cli_inputs(
 
     if input_path.is_dir():
         ai_dir = input_path / "ai"
+        if (
+            not ai_dir.exists()
+            or not any((ai_dir / candidate).is_file() for candidate in ("report_payload.json", "trends_payload.json", "anomalies_payload.json", "step_riskiest.json", "review_payload.json"))
+            or (resolved_cert is None and not (ai_dir / "report.signed.mdmp").is_file())
+        ):
+            prepare_ai_ready_artifacts(
+                input_path,
+                create_dev_mdmp_cert=resolved_cert is None,
+            )
         resolved_input = _default_prepared_payload(task, ai_dir)
         if resolved_cert is None:
             candidate_cert = ai_dir / "report.signed.mdmp"

iints/ai/prompts.py

@@ -63,10 +63,11 @@ TASK_TEMPLATES: dict[TaskName, str] = {
         "Be conservative and do not overclaim. If the payload is incomplete, say so clearly.\n"
         "Respond in markdown with these sections:\n"
         "1. Overall realism verdict (Likely realistic / Needs review / Likely unrealistic)\n"
-        "2. Strong realism signals\n"
-        "3. Questionable or unrealistic patterns\n"
-        "4. Concrete feedback points the SDK developer can improve\n"
-        "5. Suggested follow-up validation checks\n\n"
+        "2. What looks realistic\n"
+        "3. What looks suspicious\n"
+        "4. Priority fixes\n"
+        "5. What to improve next\n"
+        "6. Suggested follow-up validation checks\n\n"
         "Focus on glycemic ranges, excursion patterns, insulin behavior, safety overrides, and whether the data looks internally coherent.\n\n"
         "Input JSON:\n{data}"
     ),

iints/analysis/__init__.py

@@ -1,18 +1,95 @@
 from .clinical_metrics import ClinicalMetricsCalculator, ClinicalMetricsResult
 from .baseline import compute_metrics, run_baseline_comparison, write_baseline_comparison
-from .booth_demo import build_booth_demo
-from .carelink_workbench import build_carelink_workbench
-from .poster import generate_results_poster
-from .reporting import ClinicalReportGenerator
+from .study_protocol import (
+    build_study_protocol_payload,
+    render_study_protocol_markdown,
+    write_study_protocol_bundle,
+)
+from .study_analysis import (
+    analyze_run_directory,
+    analyze_study_directory,
+    compare_studies,
+    load_study_summary,
+    quality_badges_for_metrics,
+    StudyComparison,
+    StudyRunSummary,
+    StudySummary,
+)
+
+
+def _missing_reports_dependency(feature: str, exc: Exception) -> None:
+    raise ImportError(
+        f"{feature} requires the optional reporting stack. Install "
+        f"'iints-sdk-python35[reports]' or 'iints-sdk-python35[full]'."
+    ) from exc
+
+
+try:
+    from .booth_demo import build_booth_demo
+except Exception as exc:  # pragma: no cover - optional reports stack
+    _build_booth_demo_exc = exc
+
+    def build_booth_demo(*args, **kwargs):  # type: ignore[misc,no-redef]
+        _missing_reports_dependency("build_booth_demo()", _build_booth_demo_exc)
+
+
+try:
+    from .carelink_workbench import build_carelink_workbench
+except Exception as exc:  # pragma: no cover - optional reports stack
+    _build_carelink_workbench_exc = exc
+
+    def build_carelink_workbench(*args, **kwargs):  # type: ignore[misc,no-redef]
+        _missing_reports_dependency("build_carelink_workbench()", _build_carelink_workbench_exc)
+
+
+try:
+    from .poster import generate_results_poster
+except Exception as exc:  # pragma: no cover - optional reports stack
+    _generate_results_poster_exc = exc
+
+    def generate_results_poster(*args, **kwargs):  # type: ignore[misc,no-redef]
+        _missing_reports_dependency("generate_results_poster()", _generate_results_poster_exc)
+
+
+try:
+    from .reporting import ClinicalReportGenerator
+except Exception as exc:  # pragma: no cover - optional reports stack
+    _clinical_report_generator_exc = exc
+
+    class ClinicalReportGenerator:  # type: ignore[no-redef]
+        def __init__(self, *args, **kwargs):
+            _missing_reports_dependency("ClinicalReportGenerator", _clinical_report_generator_exc)
+
+
+try:
+    from .study_poster import generate_study_poster
+except Exception as exc:  # pragma: no cover - optional reports stack
+    _generate_study_poster_exc = exc
+
+    def generate_study_poster(*args, **kwargs):  # type: ignore[misc,no-redef]
+        _missing_reports_dependency("generate_study_poster()", _generate_study_poster_exc)
+
 
 __all__ = [
+    "analyze_run_directory",
+    "analyze_study_directory",
     "build_booth_demo",
     "build_carelink_workbench",
     "ClinicalMetricsCalculator",
     "ClinicalMetricsResult",
     "ClinicalReportGenerator",
     "compute_metrics",
+    "compare_studies",
     "generate_results_poster",
+    "generate_study_poster",
+    "build_study_protocol_payload",
+    "render_study_protocol_markdown",
+    "write_study_protocol_bundle",
+    "load_study_summary",
+    "quality_badges_for_metrics",
     "run_baseline_comparison",
+    "StudyComparison",
+    "StudyRunSummary",
+    "StudySummary",
     "write_baseline_comparison",
 ]