iints-sdk-python35 0.1.7__py3-none-any.whl

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Files changed (93) hide show
  1. iints/__init__.py +134 -0
  2. iints/analysis/__init__.py +12 -0
  3. iints/analysis/algorithm_xray.py +387 -0
  4. iints/analysis/baseline.py +92 -0
  5. iints/analysis/clinical_benchmark.py +198 -0
  6. iints/analysis/clinical_metrics.py +551 -0
  7. iints/analysis/clinical_tir_analyzer.py +136 -0
  8. iints/analysis/diabetes_metrics.py +43 -0
  9. iints/analysis/edge_performance_monitor.py +315 -0
  10. iints/analysis/explainability.py +94 -0
  11. iints/analysis/explainable_ai.py +232 -0
  12. iints/analysis/hardware_benchmark.py +221 -0
  13. iints/analysis/metrics.py +117 -0
  14. iints/analysis/reporting.py +261 -0
  15. iints/analysis/sensor_filtering.py +54 -0
  16. iints/analysis/validator.py +273 -0
  17. iints/api/__init__.py +0 -0
  18. iints/api/base_algorithm.py +300 -0
  19. iints/api/template_algorithm.py +195 -0
  20. iints/cli/__init__.py +0 -0
  21. iints/cli/cli.py +1286 -0
  22. iints/core/__init__.py +1 -0
  23. iints/core/algorithms/__init__.py +0 -0
  24. iints/core/algorithms/battle_runner.py +138 -0
  25. iints/core/algorithms/correction_bolus.py +86 -0
  26. iints/core/algorithms/discovery.py +92 -0
  27. iints/core/algorithms/fixed_basal_bolus.py +52 -0
  28. iints/core/algorithms/hybrid_algorithm.py +92 -0
  29. iints/core/algorithms/lstm_algorithm.py +138 -0
  30. iints/core/algorithms/mock_algorithms.py +69 -0
  31. iints/core/algorithms/pid_controller.py +88 -0
  32. iints/core/algorithms/standard_pump_algo.py +64 -0
  33. iints/core/device.py +0 -0
  34. iints/core/device_manager.py +64 -0
  35. iints/core/devices/__init__.py +3 -0
  36. iints/core/devices/models.py +155 -0
  37. iints/core/patient/__init__.py +3 -0
  38. iints/core/patient/models.py +246 -0
  39. iints/core/patient/patient_factory.py +117 -0
  40. iints/core/patient/profile.py +41 -0
  41. iints/core/safety/__init__.py +4 -0
  42. iints/core/safety/input_validator.py +87 -0
  43. iints/core/safety/supervisor.py +29 -0
  44. iints/core/simulation/__init__.py +0 -0
  45. iints/core/simulation/scenario_parser.py +61 -0
  46. iints/core/simulator.py +519 -0
  47. iints/core/supervisor.py +275 -0
  48. iints/data/__init__.py +42 -0
  49. iints/data/adapter.py +142 -0
  50. iints/data/column_mapper.py +398 -0
  51. iints/data/demo/__init__.py +1 -0
  52. iints/data/demo/demo_cgm.csv +289 -0
  53. iints/data/importer.py +275 -0
  54. iints/data/ingestor.py +162 -0
  55. iints/data/quality_checker.py +550 -0
  56. iints/data/universal_parser.py +813 -0
  57. iints/data/virtual_patients/clinic_safe_baseline.yaml +9 -0
  58. iints/data/virtual_patients/clinic_safe_hyper_challenge.yaml +9 -0
  59. iints/data/virtual_patients/clinic_safe_hypo_prone.yaml +9 -0
  60. iints/data/virtual_patients/clinic_safe_midnight.yaml +9 -0
  61. iints/data/virtual_patients/clinic_safe_pizza.yaml +9 -0
  62. iints/data/virtual_patients/clinic_safe_stress_meal.yaml +9 -0
  63. iints/data/virtual_patients/default_patient.yaml +11 -0
  64. iints/data/virtual_patients/patient_559_config.yaml +11 -0
  65. iints/emulation/__init__.py +80 -0
  66. iints/emulation/legacy_base.py +414 -0
  67. iints/emulation/medtronic_780g.py +337 -0
  68. iints/emulation/omnipod_5.py +367 -0
  69. iints/emulation/tandem_controliq.py +393 -0
  70. iints/highlevel.py +192 -0
  71. iints/learning/__init__.py +3 -0
  72. iints/learning/autonomous_optimizer.py +194 -0
  73. iints/learning/learning_system.py +122 -0
  74. iints/metrics.py +34 -0
  75. iints/presets/__init__.py +28 -0
  76. iints/presets/presets.json +114 -0
  77. iints/templates/__init__.py +0 -0
  78. iints/templates/default_algorithm.py +56 -0
  79. iints/templates/scenarios/__init__.py +0 -0
  80. iints/templates/scenarios/example_scenario.json +34 -0
  81. iints/utils/__init__.py +3 -0
  82. iints/utils/plotting.py +50 -0
  83. iints/validation/__init__.py +117 -0
  84. iints/validation/schemas.py +72 -0
  85. iints/visualization/__init__.py +34 -0
  86. iints/visualization/cockpit.py +691 -0
  87. iints/visualization/uncertainty_cloud.py +612 -0
  88. iints_sdk_python35-0.1.7.dist-info/METADATA +122 -0
  89. iints_sdk_python35-0.1.7.dist-info/RECORD +93 -0
  90. iints_sdk_python35-0.1.7.dist-info/WHEEL +5 -0
  91. iints_sdk_python35-0.1.7.dist-info/entry_points.txt +2 -0
  92. iints_sdk_python35-0.1.7.dist-info/licenses/LICENSE +28 -0
  93. iints_sdk_python35-0.1.7.dist-info/top_level.txt +1 -0
@@ -0,0 +1,122 @@
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+ Metadata-Version: 2.4
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+ Name: iints-sdk-python35
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+ Version: 0.1.7
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+ Summary: A pre-clinical Edge-AI SDK for diabetes management validation.
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+ Author-email: Rune Bobbaers <rune.bobbaers@gmail.com>
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+ Project-URL: Homepage, https://github.com/python35/IINTS-SDK
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+ Classifier: Programming Language :: Python :: 3
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+ Classifier: License :: OSI Approved :: MIT License
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+ Classifier: Operating System :: OS Independent
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+ Classifier: Development Status :: 3 - Alpha
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+ Requires-Python: >=3.8
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE
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+ Requires-Dist: fpdf2>=2.8.0
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+ Requires-Dist: matplotlib>=3.5.0
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+ Requires-Dist: numpy>=1.24.0
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+ Requires-Dist: openpyxl>=3.0.0
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+ Requires-Dist: pandas>=2.0.0
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+ Requires-Dist: pydantic>=2.0.0
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+ Requires-Dist: PyYAML
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+ Requires-Dist: rich>=12.0.0
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+ Requires-Dist: scipy>=1.9.0
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+ Requires-Dist: seaborn>=0.11.0
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+ Requires-Dist: typer[all]
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+ Provides-Extra: dev
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+ Requires-Dist: pytest>=7.0.0; extra == "dev"
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+ Requires-Dist: flake8; extra == "dev"
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+ Requires-Dist: mypy; extra == "dev"
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+ Requires-Dist: pandas-stubs; extra == "dev"
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+ Requires-Dist: types-PyYAML; extra == "dev"
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+ Requires-Dist: types-psutil; extra == "dev"
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+ Provides-Extra: torch
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+ Requires-Dist: torch>=1.9.0; extra == "torch"
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+ Dynamic: license-file
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+
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+ # IINTS-AF SDK (v0.1.5)
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+ [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/python35/IINTS-SDK/blob/main/examples/notebooks/00_Quickstart.ipynb)
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+ [![Python Package CI](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml/badge.svg)](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml)
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+
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+ ## Intelligent Insulin Titration System for Artificial Pancreas
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+
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+ IINTS-AF is a **safety-first simulation and validation platform** for insulin dosing algorithms. It lets you test AI or classical controllers on virtual patients, enforce deterministic safety constraints, and generate audit-ready clinical reports before anything touches a real patient.
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+
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+ **In one session you can**:
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+ * Run a clinic-safe preset and compare against PID and standard pump baselines
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+ * Import real-world CGM CSV into a standard schema + scenario JSON
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+ * Use the bundled demo CGM data pack (zero setup)
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+ * Export a clean PDF report plus full audit trail (JSONL/CSV)
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+ * Stress-test sensor noise, pump limits, and human-in-the-loop interventions
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+ * Generate patient profiles with ISF/ICR + dawn phenomenon
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+
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+ **Who it’s for**:
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+ * Diabetes researchers and clinicians validating new control strategies
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+ * ML engineers benchmarking AI controllers with medical safety rails
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+ * Developers building decision-support systems for closed-loop insulin delivery
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+
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+ ### Quick Start (CLI)
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+ ```bash
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+ iints quickstart --project-name iints_quickstart
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+ cd iints_quickstart
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+ iints presets run --name baseline_t1d --algo algorithms/example_algorithm.py
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+ ```
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+
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+ One-line full run (CSV + audit + PDF + baseline):
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+ ```bash
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+ iints run-full --algo algorithms/example_algorithm.py \
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+ --scenario-path scenarios/clinic_safe_baseline.json \
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+ --output-dir results/run_full
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+ ```
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+
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+ Import real-world CGM data:
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+ ```bash
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+ iints import-data --input-csv data/my_cgm.csv --output-dir results/imported
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+ ```
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+
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+ Try the bundled demo data pack:
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+ ```bash
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+ iints import-demo --output-dir results/demo_import
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+ ```
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+
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+ Or run the full demo workflow (import + run + report) in one script:
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+ ```bash
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+ python3 examples/demo_quickstart_flow.py
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+ ```
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+
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+ ### Quick Start (Python)
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+ ```python
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+ import iints
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+ from iints.core.algorithms.pid_controller import PIDController
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+
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+ outputs = iints.run_simulation(
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+ algorithm=PIDController(),
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+ scenario="scenarios/example_scenario.json",
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+ patient_config="default_patient",
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+ duration_minutes=720,
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+ seed=42,
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+ output_dir="results/quick_run",
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+ )
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+ ```
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+
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+ ### Notebook Guide
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+ Hands-on Jupyter notebooks live in `examples/notebooks/` and cover the full workflow (each is Colab-ready):
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+
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+ * Quickstart end-to-end run
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+ * Presets + scenario validation
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+ * Safety supervisor behavior
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+ * Audit trail + PDF report export
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+ * Baseline comparison + clinical metrics
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+ * Sensor/pump models + human-in-the-loop
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+ * Optional Torch/LSTM usage
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+ * Ablation study (with/without Supervisor)
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+
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+ ### Documentation
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+ * Product manual: `SDK_COMPREHENSIVE_GUIDE.md`
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+ * Notebook index: `examples/notebooks/README.md`
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+ * Technical README: `TECHNICAL_README.md`
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+ * API Stability: `API_STABILITY.md`
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+
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+ ### Ethics & Safety
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+ This SDK is for **research and validation**. It is not a medical device and does not provide clinical dosing advice.
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+
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+ > “Code shouldn’t be a secret when it’s managing a life.” — Bobbaers Rune
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+ iints/highlevel.py,sha256=60isMJhAXsjUqcxLOpqAf_UM2M_WgaqgXpQNeOvFpic,7147
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+ iints/metrics.py,sha256=O9hqOqJpUhUJDqsbfuqRMS9dkV97gzcgh3Y2jYUqHzg,907
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+ iints/analysis/__init__.py,sha256=Qx49KDy0deoxSnVORJB10_BsdezZXKsuoXTR0KZRcqg,411
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+ iints/analysis/baseline.py,sha256=PCFVb5vX0lYKChZvVk-8I_B5NLQQwGyx7Y6M3XjpIEY,3458
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+ iints/analysis/clinical_benchmark.py,sha256=-bo7qKIYaSoJSd_GKj9DoPby0_UmH9wGXtzx6TmuONY,7760
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+ iints/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ iints/core/algorithms/mock_algorithms.py,sha256=rk8F4f1wllBoxhzgkO1trnqYfHT6XWVskKV5I_CSU9o,2453
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+ iints/core/algorithms/standard_pump_algo.py,sha256=Ejc1rPgu2Ep8AjNCQNZlge2IknM-o8uv-Gd3aW7jHPo,3172
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+ iints/learning/__init__.py,sha256=T2fjY3eSs_ddYwnZn5_Ebz7O70P71rFgT23EGv4ooEY,178
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+ iints/learning/autonomous_optimizer.py,sha256=xRVZfkHnpRfkYIonYp0hh2-3FRvDrSjzRSWgKVyko04,7866
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+ iints/learning/learning_system.py,sha256=LKVmMRBJrc8x7oz6Mww_GzKbzyd6Z9F5KK4BH78S9cc,4755
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+ iints/presets/__init__.py,sha256=uxf07XQycTwZsWhMU3kPfqybItGz7kAek5XNPdnXM4Q,724
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+ iints/presets/presets.json,sha256=bGNGYrbit3gcCFA-jpprbImkOQJ1kHiX-X1NWBX0tJg,4161
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+ iints/templates/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ iints/templates/default_algorithm.py,sha256=fbiZxV5Ds_fesDU7MieU8oVQhMyZq5rSX0xKLXjLDKw,2726
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+ iints/templates/scenarios/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ iints/templates/scenarios/example_scenario.json,sha256=-utmI6IYwBibiCfpxyTYP5tBLhG0HJrjoaSv_l58_L4,791
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+ iints/utils/__init__.py,sha256=KGDuOUBT-G2_76sLWJqDhR_nhcgE17ZMGuQxObhy_mo,71
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+ iints/utils/plotting.py,sha256=D-25txDZG00oPWcGRnzZUbsnxVzzJ-3sH0yp23RrpQ0,1334
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+ iints/validation/__init__.py,sha256=MhTrxWfRr2AyUvYd1CKL2ZCFQPnZ-6ta_1MFXwRkn6c,4390
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+ iints/validation/schemas.py,sha256=zyoCOfAJy-k5X3qgSd_QV8dgmcHsn9g3aJ6j5EiVkf4,3119
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+ iints/visualization/__init__.py,sha256=OdxVHDpY-9bDt8DTWWd-dspn1p0O9T908Cck-IGFaiM,640
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+ iints/visualization/cockpit.py,sha256=yrfsUoeJAz0kY84HpKxDNMAfWaTKrfkRl-7dTmLT7N8,25061
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+ iints/visualization/uncertainty_cloud.py,sha256=I5nNzSitgai21rkul31YNtJriSEmCeTsW0GWW2HUskY,19848
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+ iints_sdk_python35-0.1.7.dist-info/licenses/LICENSE,sha256=b1luljj2mWWDW10t_qFIqd9Z6euXAcDBmIXowWuUlm4,1417
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+ iints_sdk_python35-0.1.7.dist-info/METADATA,sha256=lvtRCuwSwflhYLYh1Hkmo0p9UGpnlj1ZVOwwMlPBeWo,4504
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+ iints_sdk_python35-0.1.7.dist-info/WHEEL,sha256=SmOxYU7pzNKBqASvQJ7DjX3XGUF92lrGhMb3R6_iiqI,91
91
+ iints_sdk_python35-0.1.7.dist-info/entry_points.txt,sha256=lGlzKuiOr5go6vLM9K5_jVZYOpP0miFVElgq_S32Uvk,44
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+ iints_sdk_python35-0.1.7.dist-info/top_level.txt,sha256=7Usr6NQKiC9SpNFyCis81MmgXy71lDCr5unR8BNXZ0E,6
93
+ iints_sdk_python35-0.1.7.dist-info/RECORD,,
@@ -0,0 +1,5 @@
1
+ Wheel-Version: 1.0
2
+ Generator: setuptools (79.0.1)
3
+ Root-Is-Purelib: true
4
+ Tag: py3-none-any
5
+
@@ -0,0 +1,2 @@
1
+ [console_scripts]
2
+ iints = iints.cli.cli:app
@@ -0,0 +1,28 @@
1
+ MIT License
2
+
3
+ Copyright (c) 2026 IINTS-AF Contributors
4
+
5
+ Permission is hereby granted, free of charge, to any person obtaining a copy
6
+ of this software and associated documentation files (the "Software"), to deal
7
+ in the Software without restriction, including without limitation the rights
8
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
9
+ copies of the Software, and to permit persons to whom the Software is
10
+ furnished to do so, subject to the following conditions:
11
+
12
+ The above copyright notice and this permission notice shall be included in all
13
+ copies or substantial portions of the Software.
14
+
15
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
16
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
19
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
20
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
21
+ SOFTWARE.
22
+
23
+ ACADEMIC USE DISCLAIMER:
24
+ This software is intended for academic research purposes only. It is not
25
+ intended for clinical use or as a medical device. Users must comply with
26
+ all applicable regulations and obtain proper approvals before any clinical
27
+ application. The authors disclaim any responsibility for clinical use of
28
+ this software.
@@ -0,0 +1 @@
1
+ iints