iints-sdk-python35 0.0.18__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- iints/__init__.py +183 -0
- iints/analysis/__init__.py +12 -0
- iints/analysis/algorithm_xray.py +387 -0
- iints/analysis/baseline.py +92 -0
- iints/analysis/clinical_benchmark.py +198 -0
- iints/analysis/clinical_metrics.py +551 -0
- iints/analysis/clinical_tir_analyzer.py +136 -0
- iints/analysis/diabetes_metrics.py +43 -0
- iints/analysis/edge_efficiency.py +33 -0
- iints/analysis/edge_performance_monitor.py +315 -0
- iints/analysis/explainability.py +94 -0
- iints/analysis/explainable_ai.py +232 -0
- iints/analysis/hardware_benchmark.py +221 -0
- iints/analysis/metrics.py +117 -0
- iints/analysis/population_report.py +188 -0
- iints/analysis/reporting.py +345 -0
- iints/analysis/safety_index.py +311 -0
- iints/analysis/sensor_filtering.py +54 -0
- iints/analysis/validator.py +273 -0
- iints/api/__init__.py +0 -0
- iints/api/base_algorithm.py +307 -0
- iints/api/registry.py +103 -0
- iints/api/template_algorithm.py +195 -0
- iints/assets/iints_logo.png +0 -0
- iints/cli/__init__.py +0 -0
- iints/cli/cli.py +2598 -0
- iints/core/__init__.py +1 -0
- iints/core/algorithms/__init__.py +0 -0
- iints/core/algorithms/battle_runner.py +138 -0
- iints/core/algorithms/correction_bolus.py +95 -0
- iints/core/algorithms/discovery.py +92 -0
- iints/core/algorithms/fixed_basal_bolus.py +58 -0
- iints/core/algorithms/hybrid_algorithm.py +92 -0
- iints/core/algorithms/lstm_algorithm.py +138 -0
- iints/core/algorithms/mock_algorithms.py +162 -0
- iints/core/algorithms/pid_controller.py +88 -0
- iints/core/algorithms/standard_pump_algo.py +64 -0
- iints/core/device.py +0 -0
- iints/core/device_manager.py +64 -0
- iints/core/devices/__init__.py +3 -0
- iints/core/devices/models.py +160 -0
- iints/core/patient/__init__.py +9 -0
- iints/core/patient/bergman_model.py +341 -0
- iints/core/patient/models.py +285 -0
- iints/core/patient/patient_factory.py +117 -0
- iints/core/patient/profile.py +41 -0
- iints/core/safety/__init__.py +12 -0
- iints/core/safety/config.py +37 -0
- iints/core/safety/input_validator.py +95 -0
- iints/core/safety/supervisor.py +39 -0
- iints/core/simulation/__init__.py +0 -0
- iints/core/simulation/scenario_parser.py +61 -0
- iints/core/simulator.py +874 -0
- iints/core/supervisor.py +367 -0
- iints/data/__init__.py +53 -0
- iints/data/adapter.py +142 -0
- iints/data/column_mapper.py +398 -0
- iints/data/datasets.json +132 -0
- iints/data/demo/__init__.py +1 -0
- iints/data/demo/demo_cgm.csv +289 -0
- iints/data/importer.py +275 -0
- iints/data/ingestor.py +162 -0
- iints/data/nightscout.py +128 -0
- iints/data/quality_checker.py +550 -0
- iints/data/registry.py +166 -0
- iints/data/tidepool.py +38 -0
- iints/data/universal_parser.py +813 -0
- iints/data/virtual_patients/clinic_safe_baseline.yaml +9 -0
- iints/data/virtual_patients/clinic_safe_hyper_challenge.yaml +9 -0
- iints/data/virtual_patients/clinic_safe_hypo_prone.yaml +9 -0
- iints/data/virtual_patients/clinic_safe_midnight.yaml +9 -0
- iints/data/virtual_patients/clinic_safe_pizza.yaml +9 -0
- iints/data/virtual_patients/clinic_safe_stress_meal.yaml +9 -0
- iints/data/virtual_patients/default_patient.yaml +11 -0
- iints/data/virtual_patients/patient_559_config.yaml +11 -0
- iints/emulation/__init__.py +80 -0
- iints/emulation/legacy_base.py +414 -0
- iints/emulation/medtronic_780g.py +337 -0
- iints/emulation/omnipod_5.py +367 -0
- iints/emulation/tandem_controliq.py +393 -0
- iints/highlevel.py +451 -0
- iints/learning/__init__.py +3 -0
- iints/learning/autonomous_optimizer.py +194 -0
- iints/learning/learning_system.py +122 -0
- iints/metrics.py +34 -0
- iints/population/__init__.py +11 -0
- iints/population/generator.py +131 -0
- iints/population/runner.py +327 -0
- iints/presets/__init__.py +28 -0
- iints/presets/presets.json +114 -0
- iints/research/__init__.py +30 -0
- iints/research/config.py +68 -0
- iints/research/dataset.py +319 -0
- iints/research/losses.py +73 -0
- iints/research/predictor.py +329 -0
- iints/scenarios/__init__.py +3 -0
- iints/scenarios/generator.py +92 -0
- iints/templates/__init__.py +0 -0
- iints/templates/default_algorithm.py +91 -0
- iints/templates/scenarios/__init__.py +0 -0
- iints/templates/scenarios/chaos_insulin_stacking.json +29 -0
- iints/templates/scenarios/chaos_runaway_ai.json +25 -0
- iints/templates/scenarios/example_scenario.json +35 -0
- iints/templates/scenarios/exercise_stress.json +30 -0
- iints/utils/__init__.py +3 -0
- iints/utils/plotting.py +50 -0
- iints/utils/run_io.py +152 -0
- iints/validation/__init__.py +133 -0
- iints/validation/schemas.py +94 -0
- iints/visualization/__init__.py +34 -0
- iints/visualization/cockpit.py +691 -0
- iints/visualization/uncertainty_cloud.py +612 -0
- iints_sdk_python35-0.0.18.dist-info/METADATA +225 -0
- iints_sdk_python35-0.0.18.dist-info/RECORD +118 -0
- iints_sdk_python35-0.0.18.dist-info/WHEEL +5 -0
- iints_sdk_python35-0.0.18.dist-info/entry_points.txt +10 -0
- iints_sdk_python35-0.0.18.dist-info/licenses/LICENSE +28 -0
- iints_sdk_python35-0.0.18.dist-info/top_level.txt +1 -0
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Metadata-Version: 2.4
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Name: iints-sdk-python35
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Version: 0.0.18
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Summary: A pre-clinical Edge-AI SDK for diabetes management validation.
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Author-email: Rune Bobbaers <rune.bobbaers@gmail.com>
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Project-URL: Homepage, https://github.com/python35/IINTS-SDK
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3.10
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Classifier: Programming Language :: Python :: 3.12
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Classifier: Programming Language :: Python :: 3.13
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Classifier: License :: OSI Approved :: MIT License
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Classifier: Operating System :: OS Independent
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Classifier: Development Status :: 3 - Alpha
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Requires-Python: >=3.10
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Provides-Extra: nightscout
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# IINTS-AF SDK
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[](https://badge.fury.io/py/iints-sdk-python35)
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[](https://colab.research.google.com/github/python35/IINTS-SDK/blob/main/examples/notebooks/00_Quickstart.ipynb)
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[](https://github.com/python35/IINTS-SDK/actions/workflows/python-package.yml)
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[](https://github.com/python35/IINTS-SDK/actions/workflows/health-badges.yml)
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[](https://github.com/python35/IINTS-SDK/actions/workflows/health-badges.yml)
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[](https://python35.github.io/IINTS-Site/index.html)
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<div style="text-align:center;">
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<img src="Ontwerp zonder titel.png" alt="" style="display:block; margin:0 auto;">
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</div>
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## Intelligent Insulin Titration System for Artificial Pancreas
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IINTS-AF is a **safety-first simulation and validation platform** for insulin dosing algorithms. It lets you test AI or classical controllers on virtual patients, enforce deterministic safety constraints, and generate audit-ready clinical reports before anything touches a real patient.
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**In one session you can**:
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* Run a clinic-safe preset and compare against PID and standard pump baselines
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* Import real-world CGM CSV into a standard schema + scenario JSON
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* Use the bundled demo CGM data pack (zero setup)
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* Export a clean PDF report plus full audit trail (JSONL/CSV)
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* Stress-test sensor noise, pump limits, and human-in-the-loop interventions
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* Generate patient profiles with ISF/ICR + dawn phenomenon
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**Who it’s for**:
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* Diabetes researchers and clinicians validating new control strategies
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* ML engineers benchmarking AI controllers with medical safety rails
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* Developers building decision-support systems for closed-loop insulin delivery
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## Installation
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Install the SDK directly via PyPI:
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```bash
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pip install iints-sdk-python35
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```
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### Quick Start (CLI)
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```bash
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iints quickstart --project-name iints_quickstart
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cd iints_quickstart
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iints presets run --name baseline_t1d --algo algorithms/example_algorithm.py
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```
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One-line full run (CSV + audit + PDF + baseline):
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```bash
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iints run-full --algo algorithms/example_algorithm.py \
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--scenario-path scenarios/clinic_safe_baseline.json \
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--output-dir results/run_full
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```
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By default, runs write to `results/<run_id>/` and include `config.json`, `run_metadata.json`, and `run_manifest.json`.
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Import real-world CGM data:
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```bash
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iints import-data --input-csv data/my_cgm.csv --output-dir results/imported
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```
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Try the bundled demo data pack:
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```bash
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iints import-demo --output-dir results/demo_import
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```
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Official real-world datasets (download on demand):
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```bash
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iints data list
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iints data info aide_t1d
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iints data fetch aide_t1d
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iints data cite aide_t1d
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```
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Some datasets require approval and are marked as `request` in the registry.
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`iints data info` prints BibTeX + citation text for easy referencing.
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Offline sample dataset (no download required):
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```bash
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iints data fetch sample --output-dir data_packs/sample
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```
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Nightscout import (optional dependency):
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```bash
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pip install iints-sdk-python35[nightscout]
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iints import-nightscout --url https://your-nightscout.example --output-dir results/nightscout_import
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```
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Scenario generator:
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```bash
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iints scenarios generate --name "Random Stress Test" --output-path scenarios/generated_scenario.json
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iints scenarios migrate --input-path scenarios/legacy.json
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```
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Parallel batch runs:
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```bash
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iints run-parallel --algo algorithms/example_algorithm.py --scenarios-dir scenarios --output-dir results/batch
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```
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Interactive run wizard:
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```bash
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iints run-wizard
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```
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Algorithm registry:
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```bash
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iints algorithms list
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iints algorithms info "PID Controller"
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```
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Or run the full demo workflow (import + run + report) in one script:
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```bash
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python3 examples/demo_quickstart_flow.py
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```
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### Quick Start (Python)
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```python
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import iints
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from iints.core.algorithms.pid_controller import PIDController
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outputs = iints.run_simulation(
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algorithm=PIDController(),
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scenario="scenarios/example_scenario.json",
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patient_config="default_patient",
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duration_minutes=720,
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seed=42,
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output_dir="results/quick_run",
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)
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```
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### Notebook Guide
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Hands-on Jupyter notebooks live in [`examples/notebooks/`](examples/notebooks/)
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* Quickstart end-to-end run
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* Presets + scenario validation
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* Safety supervisor behavior
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* Audit trail + PDF report export
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* Baseline comparison + clinical metrics
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* Sensor/pump models + human-in-the-loop
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* Optional Torch/LSTM usage
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* Ablation study (with/without Supervisor)
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### AI Research Track (Predictor)
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IINTS-AF includes an optional research pipeline to train a glucose **predictor** that feeds the Safety Supervisor with a 30-120 minute forecast. The predictor never doses insulin; it only provides a forecast signal.
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Install research extras:
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```bash
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pip install iints-sdk-python35[research]
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```
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Train a starter predictor:
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```bash
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python research/synthesize_dataset.py --runs 25 --output data/synthetic.parquet
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python research/train_predictor.py --data data/synthetic.parquet --config research/configs/predictor.yaml --out models
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```
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Integrate:
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```python
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from iints.research import load_predictor_service
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predictor = load_predictor_service("models/predictor.pt")
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outputs = iints.run_simulation(..., predictor=predictor)
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```
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### Documentation
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* Product manual: `docs/COMPREHENSIVE_GUIDE.md`
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* Notebook index: `examples/notebooks/README.md`
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* Technical README: `docs/TECHNICAL_README.md`
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* API Stability: `API_STABILITY.md`
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* Research track: `research/README.md`
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### Related Work & Inspiration
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We borrow techniques from the broader CGM/APS ecosystem, while differentiating with a safety‑first, audit‑ready workflow:
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* [simglucose (UVA/Padova)](https://github.com/jxx123/simglucose): gymnasium‑style interfaces and parallel batch execution concepts.
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* [OpenAPS / oref0](https://github.com/openaps/oref0): gold‑standard IOB logic and safety‑oriented control patterns.
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* [Nightscout](https://github.com/nightscout/cgm-remote-monitor) + [py-nightscout](https://pypi.org/project/py-nightscout/): reference for human‑in‑the‑loop CGM ingest (planned connector).
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* [Tidepool OpenAPI](https://developer.tidepool.org/TidepoolApi/): basis for a future cloud import client skeleton.
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### Ethics & Safety
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This SDK is for **research and validation**. It is not a medical device and does not provide clinical dosing advice.
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[iints.algorithms]
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Correction Bolus = iints.core.algorithms.correction_bolus:CorrectionBolusAlgorithm
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Fixed Basal Bolus = iints.core.algorithms.fixed_basal_bolus:FixedBasalBolus
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Mock Constant Dose = iints.core.algorithms.mock_algorithms:ConstantDoseAlgorithm
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Mock Random Dose = iints.core.algorithms.mock_algorithms:RandomDoseAlgorithm
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9
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PID Controller = iints.core.algorithms.pid_controller:PIDController
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Standard Pump = iints.core.algorithms.standard_pump_algo:StandardPumpAlgorithm
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@@ -0,0 +1,28 @@
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MIT License
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Copyright (c) 2026 IINTS-AF Contributors
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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ACADEMIC USE DISCLAIMER:
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This software is intended for academic research purposes only. It is not
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intended for clinical use or as a medical device. Users must comply with
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all applicable regulations and obtain proper approvals before any clinical
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application. The authors disclaim any responsibility for clinical use of
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this software.
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iints
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