idmtools-platform-comps 0.0.0.dev0__py3-none-any.whl → 0.0.2__py3-none-any.whl

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Files changed (64) hide show
  1. idmtools_platform_comps/__init__.py +25 -8
  2. idmtools_platform_comps/cli/__init__.py +4 -0
  3. idmtools_platform_comps/cli/cli_functions.py +50 -0
  4. idmtools_platform_comps/cli/comps.py +492 -0
  5. idmtools_platform_comps/comps_cli.py +48 -0
  6. idmtools_platform_comps/comps_operations/__init__.py +6 -0
  7. idmtools_platform_comps/comps_operations/asset_collection_operations.py +263 -0
  8. idmtools_platform_comps/comps_operations/experiment_operations.py +569 -0
  9. idmtools_platform_comps/comps_operations/simulation_operations.py +678 -0
  10. idmtools_platform_comps/comps_operations/suite_operations.py +228 -0
  11. idmtools_platform_comps/comps_operations/workflow_item_operations.py +269 -0
  12. idmtools_platform_comps/comps_platform.py +309 -0
  13. idmtools_platform_comps/plugin_info.py +168 -0
  14. idmtools_platform_comps/ssmt_operations/__init__.py +6 -0
  15. idmtools_platform_comps/ssmt_operations/simulation_operations.py +77 -0
  16. idmtools_platform_comps/ssmt_operations/workflow_item_operations.py +73 -0
  17. idmtools_platform_comps/ssmt_platform.py +44 -0
  18. idmtools_platform_comps/ssmt_work_items/__init__.py +4 -0
  19. idmtools_platform_comps/ssmt_work_items/comps_work_order_task.py +29 -0
  20. idmtools_platform_comps/ssmt_work_items/comps_workitems.py +113 -0
  21. idmtools_platform_comps/ssmt_work_items/icomps_workflowitem.py +71 -0
  22. idmtools_platform_comps/ssmt_work_items/work_order.py +54 -0
  23. idmtools_platform_comps/utils/__init__.py +4 -0
  24. idmtools_platform_comps/utils/assetize_output/__init__.py +4 -0
  25. idmtools_platform_comps/utils/assetize_output/assetize_output.py +125 -0
  26. idmtools_platform_comps/utils/assetize_output/assetize_ssmt_script.py +144 -0
  27. idmtools_platform_comps/utils/base_singularity_work_order.json +6 -0
  28. idmtools_platform_comps/utils/download/__init__.py +4 -0
  29. idmtools_platform_comps/utils/download/download.py +178 -0
  30. idmtools_platform_comps/utils/download/download_ssmt.py +81 -0
  31. idmtools_platform_comps/utils/download_experiment.py +116 -0
  32. idmtools_platform_comps/utils/file_filter_workitem.py +519 -0
  33. idmtools_platform_comps/utils/general.py +358 -0
  34. idmtools_platform_comps/utils/linux_mounts.py +73 -0
  35. idmtools_platform_comps/utils/lookups.py +123 -0
  36. idmtools_platform_comps/utils/package_version.py +489 -0
  37. idmtools_platform_comps/utils/python_requirements_ac/__init__.py +4 -0
  38. idmtools_platform_comps/utils/python_requirements_ac/create_asset_collection.py +155 -0
  39. idmtools_platform_comps/utils/python_requirements_ac/install_requirements.py +109 -0
  40. idmtools_platform_comps/utils/python_requirements_ac/requirements_to_asset_collection.py +374 -0
  41. idmtools_platform_comps/utils/python_version.py +40 -0
  42. idmtools_platform_comps/utils/scheduling.py +154 -0
  43. idmtools_platform_comps/utils/singularity_build.py +491 -0
  44. idmtools_platform_comps/utils/spatial_output.py +76 -0
  45. idmtools_platform_comps/utils/ssmt_utils/__init__.py +6 -0
  46. idmtools_platform_comps/utils/ssmt_utils/common.py +70 -0
  47. idmtools_platform_comps/utils/ssmt_utils/file_filter.py +568 -0
  48. idmtools_platform_comps/utils/sweeping.py +162 -0
  49. idmtools_platform_comps-0.0.2.dist-info/METADATA +100 -0
  50. idmtools_platform_comps-0.0.2.dist-info/RECORD +62 -0
  51. idmtools_platform_comps-0.0.2.dist-info/entry_points.txt +9 -0
  52. idmtools_platform_comps-0.0.2.dist-info/licenses/LICENSE.TXT +3 -0
  53. {idmtools_platform_comps-0.0.0.dev0.dist-info → idmtools_platform_comps-0.0.2.dist-info}/top_level.txt +1 -0
  54. ssmt_image/Dockerfile +52 -0
  55. ssmt_image/Makefile +21 -0
  56. ssmt_image/__init__.py +6 -0
  57. ssmt_image/bootstrap.sh +30 -0
  58. ssmt_image/build_docker_image.py +161 -0
  59. ssmt_image/pip.conf +3 -0
  60. ssmt_image/push_docker_image.py +49 -0
  61. ssmt_image/requirements.txt +9 -0
  62. idmtools_platform_comps-0.0.0.dev0.dist-info/METADATA +0 -41
  63. idmtools_platform_comps-0.0.0.dev0.dist-info/RECORD +0 -5
  64. {idmtools_platform_comps-0.0.0.dev0.dist-info → idmtools_platform_comps-0.0.2.dist-info}/WHEEL +0 -0
ssmt_image/push_docker_image.py ADDED
@@ -0,0 +1,49 @@
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+ """This is a workaround script to get docker versions working with pip versions and to automate build of those images.
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+
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+ Copyright 2021, Bill & Melinda Gates Foundation. All rights reserved.
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+ """
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+ import os
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+ import subprocess
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+ import sys
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+ from getpass import getpass
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+ import requests
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+ from requests.auth import HTTPBasicAuth
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+ from natsort import natsorted
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+
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+ base_version = open('../VERSION').read().strip()
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+ BASE_REPO = 'packages.idmod.org'
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+ REPO_KEY = 'idm-docker-staging'
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+ DOCKER_REPO = f'{REPO_KEY}.{BASE_REPO}'
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+ IMAGE_NAME = 'idmtools/comps_ssmt_worker'
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+ BASE_IMAGE_NAME = f'{DOCKER_REPO}/{IMAGE_NAME}'
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+
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+ if 'PYPI_STAGING_USERNAME' in os.environ:
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+ username = os.environ['PYPI_STAGING_USERNAME']
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+ else:
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+ print("Username:")
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+ username = input('Username:')
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+ if 'PYPI_STAGING_PASSWORD' in os.environ:
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+ password = os.environ['PYPI_STAGING_PASSWORD']
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+ else:
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+ password = getpass(prompt='Password:')
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+ auth = HTTPBasicAuth(username=username, password=password)
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+ response = requests.get(f'https://{BASE_REPO}/artifactory/api/docker/{REPO_KEY}/v2/{IMAGE_NAME}/tags/list', auth=auth)
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+ if response.status_code == 200:
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+ images = natsorted(response.json()['tags'], reverse=True)
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+ images = [i for i in images if len(i) > 6]
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+ last_version = images[0]
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+ if base_version in last_version:
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+ version_parts = last_version.split('.')
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+ version_parts[-1] = str(int(version_parts[-1]) + 1)
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+ version = '.'.join(version_parts)
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+ else:
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+ version = f'{base_version}.0'
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+ else:
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+ print(response.content)
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+ raise Exception('Could not load images')
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+
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+ cmd = ['docker', 'push', f'{REPO_KEY}.{BASE_REPO}/idmtools/comps_ssmt_worker:{version}']
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+ print(f'Running: {" ".join(cmd)}')
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+ p = subprocess.Popen(" ".join(cmd), cwd=os.path.abspath(os.path.dirname(__file__)), shell=True)
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+ p.wait()
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+ sys.exit(p.returncode)
ssmt_image/requirements.txt ADDED
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+ idmtools
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+ idmtools_models
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+ idmtools_platform_comps
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+ pyarrow~=0.17.1
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+ tables~=3.6.1
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+ rpy2~=3.3.4
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+ numba~=0.50.1
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+ matplotlib~=3.7.1
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+ scipy~=1.5.0
idmtools_platform_comps-0.0.0.dev0.dist-info/METADATA DELETED
@@ -1,41 +0,0 @@
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- Metadata-Version: 2.4
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- Name: idmtools-platform-comps
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- Version: 0.0.0.dev0
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- Summary: Placeholder package for idmtools-platform-comps - reserved for future use
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- Author-email: IDM <idmtools@idmod.org>
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- License: Proprietary
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- Project-URL: Homepage, https://github.com/InstituteforDiseaseModeling/idmtools
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- Project-URL: Bug Tracker, https://github.com/InstituteforDiseaseModeling/idmtools/issues
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- Keywords: placeholder,reserved,idmtools
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- Classifier: Development Status :: 1 - Planning
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- Classifier: Intended Audience :: Developers
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- Classifier: Programming Language :: Python :: 3
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- Classifier: Programming Language :: Python :: 3.8
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- Classifier: Programming Language :: Python :: 3.9
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- Classifier: Programming Language :: Python :: 3.10
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- Classifier: Programming Language :: Python :: 3.11
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- Classifier: Programming Language :: Python :: 3.12
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- Requires-Python: >=3.8
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- Description-Content-Type: text/markdown
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-
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- # idmtools-platform-comps
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-
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- **PLACEHOLDER PACKAGE - NOT FOR USE**
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-
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- This package is a placeholder to reserve the name `idmtools-platform-comps` on PyPI.
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-
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- The actual package implementation will be released in the future.
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-
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- ## Purpose
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-
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- This placeholder ensures the package name is reserved and prevents name squatting.
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-
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- ## Status
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-
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- This is version 0.0.0.dev0 - a minimal placeholder release.
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-
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- ## Future Release
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-
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- The full implementation of idmtools-platform-comps will be published when ready.
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-
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- For more information, visit: https://github.com/InstituteforDiseaseModeling/idmtools
idmtools_platform_comps-0.0.0.dev0.dist-info/RECORD DELETED
@@ -1,5 +0,0 @@
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- idmtools_platform_comps/__init__.py,sha256=Ntu18lJ3Q820Bs5ZOPvljrCcEIZqXPC6yDMbxajn_ik,194
2
- idmtools_platform_comps-0.0.0.dev0.dist-info/METADATA,sha256=6g8jaapd6Qxeg55OX8Ku8x7k_dSUC7aAu2xex0Nr3_A,1493
3
- idmtools_platform_comps-0.0.0.dev0.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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- idmtools_platform_comps-0.0.0.dev0.dist-info/top_level.txt,sha256=XsVgBTbzmllMEsHE9Wswy5okOu2KPL_Ui4XzTeNCt3E,24
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- idmtools_platform_comps-0.0.0.dev0.dist-info/RECORD,,