hubmap-search-sdk 1.0.0a1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- hubmap_search_sdk/__init__.py +94 -0
- hubmap_search_sdk/_base_client.py +1969 -0
- hubmap_search_sdk/_client.py +464 -0
- hubmap_search_sdk/_compat.py +219 -0
- hubmap_search_sdk/_constants.py +14 -0
- hubmap_search_sdk/_exceptions.py +108 -0
- hubmap_search_sdk/_files.py +123 -0
- hubmap_search_sdk/_models.py +804 -0
- hubmap_search_sdk/_qs.py +150 -0
- hubmap_search_sdk/_resource.py +43 -0
- hubmap_search_sdk/_response.py +832 -0
- hubmap_search_sdk/_streaming.py +333 -0
- hubmap_search_sdk/_types.py +217 -0
- hubmap_search_sdk/_utils/__init__.py +57 -0
- hubmap_search_sdk/_utils/_logs.py +25 -0
- hubmap_search_sdk/_utils/_proxy.py +62 -0
- hubmap_search_sdk/_utils/_reflection.py +42 -0
- hubmap_search_sdk/_utils/_streams.py +12 -0
- hubmap_search_sdk/_utils/_sync.py +86 -0
- hubmap_search_sdk/_utils/_transform.py +402 -0
- hubmap_search_sdk/_utils/_typing.py +149 -0
- hubmap_search_sdk/_utils/_utils.py +414 -0
- hubmap_search_sdk/_version.py +4 -0
- hubmap_search_sdk/lib/.keep +4 -0
- hubmap_search_sdk/py.typed +0 -0
- hubmap_search_sdk/resources/__init__.py +145 -0
- hubmap_search_sdk/resources/add.py +367 -0
- hubmap_search_sdk/resources/clear_docs.py +342 -0
- hubmap_search_sdk/resources/indices.py +145 -0
- hubmap_search_sdk/resources/mapping.py +212 -0
- hubmap_search_sdk/resources/mget.py +265 -0
- hubmap_search_sdk/resources/param_search.py +197 -0
- hubmap_search_sdk/resources/reindex.py +164 -0
- hubmap_search_sdk/resources/scroll_search.py +181 -0
- hubmap_search_sdk/resources/search.py +313 -0
- hubmap_search_sdk/resources/update.py +367 -0
- hubmap_search_sdk/types/__init__.py +23 -0
- hubmap_search_sdk/types/add_create_document_params.py +11 -0
- hubmap_search_sdk/types/add_create_document_with_index_params.py +13 -0
- hubmap_search_sdk/types/add_update_document_with_scope_params.py +15 -0
- hubmap_search_sdk/types/index_list_response.py +11 -0
- hubmap_search_sdk/types/mget_retrieve_multiple_by_index_params.py +11 -0
- hubmap_search_sdk/types/mget_retrieve_multiple_params.py +11 -0
- hubmap_search_sdk/types/param_search_execute_params.py +18 -0
- hubmap_search_sdk/types/scroll_search_create_params.py +11 -0
- hubmap_search_sdk/types/search_execute_index_query_params.py +20 -0
- hubmap_search_sdk/types/search_execute_query_params.py +20 -0
- hubmap_search_sdk/types/update_update_document_at_index_params.py +13 -0
- hubmap_search_sdk/types/update_update_document_params.py +11 -0
- hubmap_search_sdk/types/update_update_document_with_scope_params.py +15 -0
- hubmap_search_sdk-1.0.0a1.dist-info/METADATA +355 -0
- hubmap_search_sdk-1.0.0a1.dist-info/RECORD +54 -0
- hubmap_search_sdk-1.0.0a1.dist-info/WHEEL +4 -0
- hubmap_search_sdk-1.0.0a1.dist-info/licenses/LICENSE +7 -0
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# File generated from our OpenAPI spec by Stainless. See CONTRIBUTING.md for details.
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from __future__ import annotations
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import httpx
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from ..types import scroll_search_create_params
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from .._types import NOT_GIVEN, Body, Query, Headers, NoneType, NotGiven
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from .._utils import (
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maybe_transform,
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async_maybe_transform,
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)
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from .._compat import cached_property
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from .._resource import SyncAPIResource, AsyncAPIResource
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from .._response import (
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to_raw_response_wrapper,
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to_streamed_response_wrapper,
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async_to_raw_response_wrapper,
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async_to_streamed_response_wrapper,
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)
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from .._base_client import make_request_options
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__all__ = ["ScrollSearchResource", "AsyncScrollSearchResource"]
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class ScrollSearchResource(SyncAPIResource):
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@cached_property
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def with_raw_response(self) -> ScrollSearchResourceWithRawResponse:
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"""
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This property can be used as a prefix for any HTTP method call to return
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the raw response object instead of the parsed content.
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For more information, see https://www.github.com/hubmapconsortium/search-python-sdk#accessing-raw-response-data-eg-headers
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"""
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return ScrollSearchResourceWithRawResponse(self)
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@cached_property
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def with_streaming_response(self) -> ScrollSearchResourceWithStreamingResponse:
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"""
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An alternative to `.with_raw_response` that doesn't eagerly read the response body.
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For more information, see https://www.github.com/hubmapconsortium/search-python-sdk#with_streaming_response
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"""
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return ScrollSearchResourceWithStreamingResponse(self)
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def create(
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self,
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index: str,
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*,
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body: object,
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# Use the following arguments if you need to pass additional parameters to the API that aren't available via kwargs.
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# The extra values given here take precedence over values defined on the client or passed to this method.
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extra_headers: Headers | None = None,
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extra_query: Query | None = None,
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extra_body: Body | None = None,
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timeout: float | httpx.Timeout | None | NotGiven = NOT_GIVEN,
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) -> None:
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"""
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Use the OpenSearch scroll API
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(https://opensearch.org/docs/latest/api-reference/scroll/) to open a scroll
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which will be navigated in the specified time when scroll_id is not provided,
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retrieve more results when a scroll_id is provided, and close a scroll when zero
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is the specified time.
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Args:
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extra_headers: Send extra headers
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extra_query: Add additional query parameters to the request
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extra_body: Add additional JSON properties to the request
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timeout: Override the client-level default timeout for this request, in seconds
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"""
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if not index:
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raise ValueError(f"Expected a non-empty value for `index` but received {index!r}")
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extra_headers = {"Accept": "*/*", **(extra_headers or {})}
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return self._post(
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f"/{index}/scroll-search",
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body=maybe_transform(body, scroll_search_create_params.ScrollSearchCreateParams),
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options=make_request_options(
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extra_headers=extra_headers, extra_query=extra_query, extra_body=extra_body, timeout=timeout
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),
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cast_to=NoneType,
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)
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class AsyncScrollSearchResource(AsyncAPIResource):
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@cached_property
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def with_raw_response(self) -> AsyncScrollSearchResourceWithRawResponse:
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"""
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This property can be used as a prefix for any HTTP method call to return
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the raw response object instead of the parsed content.
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For more information, see https://www.github.com/hubmapconsortium/search-python-sdk#accessing-raw-response-data-eg-headers
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"""
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return AsyncScrollSearchResourceWithRawResponse(self)
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@cached_property
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def with_streaming_response(self) -> AsyncScrollSearchResourceWithStreamingResponse:
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"""
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An alternative to `.with_raw_response` that doesn't eagerly read the response body.
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For more information, see https://www.github.com/hubmapconsortium/search-python-sdk#with_streaming_response
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"""
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return AsyncScrollSearchResourceWithStreamingResponse(self)
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async def create(
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self,
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index: str,
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*,
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body: object,
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# Use the following arguments if you need to pass additional parameters to the API that aren't available via kwargs.
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# The extra values given here take precedence over values defined on the client or passed to this method.
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extra_headers: Headers | None = None,
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extra_query: Query | None = None,
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extra_body: Body | None = None,
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timeout: float | httpx.Timeout | None | NotGiven = NOT_GIVEN,
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) -> None:
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"""
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Use the OpenSearch scroll API
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(https://opensearch.org/docs/latest/api-reference/scroll/) to open a scroll
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which will be navigated in the specified time when scroll_id is not provided,
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retrieve more results when a scroll_id is provided, and close a scroll when zero
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is the specified time.
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Args:
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extra_headers: Send extra headers
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extra_query: Add additional query parameters to the request
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extra_body: Add additional JSON properties to the request
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timeout: Override the client-level default timeout for this request, in seconds
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"""
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if not index:
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raise ValueError(f"Expected a non-empty value for `index` but received {index!r}")
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extra_headers = {"Accept": "*/*", **(extra_headers or {})}
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return await self._post(
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f"/{index}/scroll-search",
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body=await async_maybe_transform(body, scroll_search_create_params.ScrollSearchCreateParams),
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options=make_request_options(
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extra_headers=extra_headers, extra_query=extra_query, extra_body=extra_body, timeout=timeout
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),
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cast_to=NoneType,
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)
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class ScrollSearchResourceWithRawResponse:
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def __init__(self, scroll_search: ScrollSearchResource) -> None:
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self._scroll_search = scroll_search
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self.create = to_raw_response_wrapper(
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scroll_search.create,
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)
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class AsyncScrollSearchResourceWithRawResponse:
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def __init__(self, scroll_search: AsyncScrollSearchResource) -> None:
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self._scroll_search = scroll_search
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self.create = async_to_raw_response_wrapper(
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scroll_search.create,
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)
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class ScrollSearchResourceWithStreamingResponse:
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def __init__(self, scroll_search: ScrollSearchResource) -> None:
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self._scroll_search = scroll_search
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self.create = to_streamed_response_wrapper(
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scroll_search.create,
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)
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class AsyncScrollSearchResourceWithStreamingResponse:
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def __init__(self, scroll_search: AsyncScrollSearchResource) -> None:
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self._scroll_search = scroll_search
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self.create = async_to_streamed_response_wrapper(
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scroll_search.create,
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)
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# File generated from our OpenAPI spec by Stainless. See CONTRIBUTING.md for details.
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from __future__ import annotations
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import httpx
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from ..types import search_execute_query_params, search_execute_index_query_params
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from .._types import NOT_GIVEN, Body, Query, Headers, NotGiven
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from .._utils import (
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maybe_transform,
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async_maybe_transform,
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)
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from .._compat import cached_property
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from .._resource import SyncAPIResource, AsyncAPIResource
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from .._response import (
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to_raw_response_wrapper,
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to_streamed_response_wrapper,
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async_to_raw_response_wrapper,
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async_to_streamed_response_wrapper,
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)
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from .._base_client import make_request_options
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__all__ = ["SearchResource", "AsyncSearchResource"]
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class SearchResource(SyncAPIResource):
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@cached_property
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def with_raw_response(self) -> SearchResourceWithRawResponse:
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"""
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This property can be used as a prefix for any HTTP method call to return
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the raw response object instead of the parsed content.
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For more information, see https://www.github.com/hubmapconsortium/search-python-sdk#accessing-raw-response-data-eg-headers
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"""
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return SearchResourceWithRawResponse(self)
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@cached_property
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def with_streaming_response(self) -> SearchResourceWithStreamingResponse:
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"""
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An alternative to `.with_raw_response` that doesn't eagerly read the response body.
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For more information, see https://www.github.com/hubmapconsortium/search-python-sdk#with_streaming_response
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"""
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return SearchResourceWithStreamingResponse(self)
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def execute_index_query(
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self,
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index_name: str,
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*,
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body: object,
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produce_clt_manifest: str | NotGiven = NOT_GIVEN,
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# Use the following arguments if you need to pass additional parameters to the API that aren't available via kwargs.
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# The extra values given here take precedence over values defined on the client or passed to this method.
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extra_headers: Headers | None = None,
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extra_query: Query | None = None,
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extra_body: Body | None = None,
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timeout: float | httpx.Timeout | None | NotGiven = NOT_GIVEN,
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) -> object:
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"""
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To execute a query, the POST method must provide 1) a request body that
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specifies an
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[Elasticsearch Query DSL statement](https://www.elastic.co/guide/en/elasticsearch/reference/current/search-your-data.html) 2)
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a bearer token in the Authorization header supplied by HuBMAP. Results are
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limited to those authorized by the bearer token. Uses the
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<strong>entities</strong> index by default.
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Args:
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produce_clt_manifest: An optional parameter that, when set to "true", will make the endpoint return a
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text representation of a manifest file that corresponds with the datasets
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queried rather than the original response
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extra_headers: Send extra headers
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extra_query: Add additional query parameters to the request
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extra_body: Add additional JSON properties to the request
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timeout: Override the client-level default timeout for this request, in seconds
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"""
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if not index_name:
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raise ValueError(f"Expected a non-empty value for `index_name` but received {index_name!r}")
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return self._post(
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f"/{index_name}/search",
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body=maybe_transform(body, search_execute_index_query_params.SearchExecuteIndexQueryParams),
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options=make_request_options(
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extra_headers=extra_headers,
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extra_query=extra_query,
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extra_body=extra_body,
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timeout=timeout,
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query=maybe_transform(
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{"produce_clt_manifest": produce_clt_manifest},
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search_execute_index_query_params.SearchExecuteIndexQueryParams,
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),
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),
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cast_to=object,
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)
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def execute_query(
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self,
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*,
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body: object,
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produce_clt_manifest: str | NotGiven = NOT_GIVEN,
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# Use the following arguments if you need to pass additional parameters to the API that aren't available via kwargs.
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# The extra values given here take precedence over values defined on the client or passed to this method.
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extra_headers: Headers | None = None,
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extra_query: Query | None = None,
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extra_body: Body | None = None,
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timeout: float | httpx.Timeout | None | NotGiven = NOT_GIVEN,
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) -> object:
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"""
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To execute a query, the POST method must provide 1) a request body that
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specifies an
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[Elasticsearch Query DSL statement](https://www.elastic.co/guide/en/elasticsearch/reference/current/search-your-data.html) 2)
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a bearer token in the Authorization header supplied by HuBMAP. Results are
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limited to those authorized by the bearer token. Uses the
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<strong>entities</strong> index by default.
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Args:
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produce_clt_manifest: An optional parameter that, when set to "true", will make the endpoint return a
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text representation of a manifest file that corresponds with the datasets
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queried rather than the original response
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extra_headers: Send extra headers
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extra_query: Add additional query parameters to the request
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extra_body: Add additional JSON properties to the request
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timeout: Override the client-level default timeout for this request, in seconds
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"""
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return self._post(
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|
+
"/search",
|
133
|
+
body=maybe_transform(body, search_execute_query_params.SearchExecuteQueryParams),
|
134
|
+
options=make_request_options(
|
135
|
+
extra_headers=extra_headers,
|
136
|
+
extra_query=extra_query,
|
137
|
+
extra_body=extra_body,
|
138
|
+
timeout=timeout,
|
139
|
+
query=maybe_transform(
|
140
|
+
{"produce_clt_manifest": produce_clt_manifest}, search_execute_query_params.SearchExecuteQueryParams
|
141
|
+
),
|
142
|
+
),
|
143
|
+
cast_to=object,
|
144
|
+
)
|
145
|
+
|
146
|
+
|
147
|
+
class AsyncSearchResource(AsyncAPIResource):
|
148
|
+
@cached_property
|
149
|
+
def with_raw_response(self) -> AsyncSearchResourceWithRawResponse:
|
150
|
+
"""
|
151
|
+
This property can be used as a prefix for any HTTP method call to return
|
152
|
+
the raw response object instead of the parsed content.
|
153
|
+
|
154
|
+
For more information, see https://www.github.com/hubmapconsortium/search-python-sdk#accessing-raw-response-data-eg-headers
|
155
|
+
"""
|
156
|
+
return AsyncSearchResourceWithRawResponse(self)
|
157
|
+
|
158
|
+
@cached_property
|
159
|
+
def with_streaming_response(self) -> AsyncSearchResourceWithStreamingResponse:
|
160
|
+
"""
|
161
|
+
An alternative to `.with_raw_response` that doesn't eagerly read the response body.
|
162
|
+
|
163
|
+
For more information, see https://www.github.com/hubmapconsortium/search-python-sdk#with_streaming_response
|
164
|
+
"""
|
165
|
+
return AsyncSearchResourceWithStreamingResponse(self)
|
166
|
+
|
167
|
+
async def execute_index_query(
|
168
|
+
self,
|
169
|
+
index_name: str,
|
170
|
+
*,
|
171
|
+
body: object,
|
172
|
+
produce_clt_manifest: str | NotGiven = NOT_GIVEN,
|
173
|
+
# Use the following arguments if you need to pass additional parameters to the API that aren't available via kwargs.
|
174
|
+
# The extra values given here take precedence over values defined on the client or passed to this method.
|
175
|
+
extra_headers: Headers | None = None,
|
176
|
+
extra_query: Query | None = None,
|
177
|
+
extra_body: Body | None = None,
|
178
|
+
timeout: float | httpx.Timeout | None | NotGiven = NOT_GIVEN,
|
179
|
+
) -> object:
|
180
|
+
"""
|
181
|
+
To execute a query, the POST method must provide 1) a request body that
|
182
|
+
specifies an
|
183
|
+
[Elasticsearch Query DSL statement](https://www.elastic.co/guide/en/elasticsearch/reference/current/search-your-data.html) 2)
|
184
|
+
a bearer token in the Authorization header supplied by HuBMAP. Results are
|
185
|
+
limited to those authorized by the bearer token. Uses the
|
186
|
+
<strong>entities</strong> index by default.
|
187
|
+
|
188
|
+
Args:
|
189
|
+
produce_clt_manifest: An optional parameter that, when set to "true", will make the endpoint return a
|
190
|
+
text representation of a manifest file that corresponds with the datasets
|
191
|
+
queried rather than the original response
|
192
|
+
|
193
|
+
extra_headers: Send extra headers
|
194
|
+
|
195
|
+
extra_query: Add additional query parameters to the request
|
196
|
+
|
197
|
+
extra_body: Add additional JSON properties to the request
|
198
|
+
|
199
|
+
timeout: Override the client-level default timeout for this request, in seconds
|
200
|
+
"""
|
201
|
+
if not index_name:
|
202
|
+
raise ValueError(f"Expected a non-empty value for `index_name` but received {index_name!r}")
|
203
|
+
return await self._post(
|
204
|
+
f"/{index_name}/search",
|
205
|
+
body=await async_maybe_transform(body, search_execute_index_query_params.SearchExecuteIndexQueryParams),
|
206
|
+
options=make_request_options(
|
207
|
+
extra_headers=extra_headers,
|
208
|
+
extra_query=extra_query,
|
209
|
+
extra_body=extra_body,
|
210
|
+
timeout=timeout,
|
211
|
+
query=await async_maybe_transform(
|
212
|
+
{"produce_clt_manifest": produce_clt_manifest},
|
213
|
+
search_execute_index_query_params.SearchExecuteIndexQueryParams,
|
214
|
+
),
|
215
|
+
),
|
216
|
+
cast_to=object,
|
217
|
+
)
|
218
|
+
|
219
|
+
async def execute_query(
|
220
|
+
self,
|
221
|
+
*,
|
222
|
+
body: object,
|
223
|
+
produce_clt_manifest: str | NotGiven = NOT_GIVEN,
|
224
|
+
# Use the following arguments if you need to pass additional parameters to the API that aren't available via kwargs.
|
225
|
+
# The extra values given here take precedence over values defined on the client or passed to this method.
|
226
|
+
extra_headers: Headers | None = None,
|
227
|
+
extra_query: Query | None = None,
|
228
|
+
extra_body: Body | None = None,
|
229
|
+
timeout: float | httpx.Timeout | None | NotGiven = NOT_GIVEN,
|
230
|
+
) -> object:
|
231
|
+
"""
|
232
|
+
To execute a query, the POST method must provide 1) a request body that
|
233
|
+
specifies an
|
234
|
+
[Elasticsearch Query DSL statement](https://www.elastic.co/guide/en/elasticsearch/reference/current/search-your-data.html) 2)
|
235
|
+
a bearer token in the Authorization header supplied by HuBMAP. Results are
|
236
|
+
limited to those authorized by the bearer token. Uses the
|
237
|
+
<strong>entities</strong> index by default.
|
238
|
+
|
239
|
+
Args:
|
240
|
+
produce_clt_manifest: An optional parameter that, when set to "true", will make the endpoint return a
|
241
|
+
text representation of a manifest file that corresponds with the datasets
|
242
|
+
queried rather than the original response
|
243
|
+
|
244
|
+
extra_headers: Send extra headers
|
245
|
+
|
246
|
+
extra_query: Add additional query parameters to the request
|
247
|
+
|
248
|
+
extra_body: Add additional JSON properties to the request
|
249
|
+
|
250
|
+
timeout: Override the client-level default timeout for this request, in seconds
|
251
|
+
"""
|
252
|
+
return await self._post(
|
253
|
+
"/search",
|
254
|
+
body=await async_maybe_transform(body, search_execute_query_params.SearchExecuteQueryParams),
|
255
|
+
options=make_request_options(
|
256
|
+
extra_headers=extra_headers,
|
257
|
+
extra_query=extra_query,
|
258
|
+
extra_body=extra_body,
|
259
|
+
timeout=timeout,
|
260
|
+
query=await async_maybe_transform(
|
261
|
+
{"produce_clt_manifest": produce_clt_manifest}, search_execute_query_params.SearchExecuteQueryParams
|
262
|
+
),
|
263
|
+
),
|
264
|
+
cast_to=object,
|
265
|
+
)
|
266
|
+
|
267
|
+
|
268
|
+
class SearchResourceWithRawResponse:
|
269
|
+
def __init__(self, search: SearchResource) -> None:
|
270
|
+
self._search = search
|
271
|
+
|
272
|
+
self.execute_index_query = to_raw_response_wrapper(
|
273
|
+
search.execute_index_query,
|
274
|
+
)
|
275
|
+
self.execute_query = to_raw_response_wrapper(
|
276
|
+
search.execute_query,
|
277
|
+
)
|
278
|
+
|
279
|
+
|
280
|
+
class AsyncSearchResourceWithRawResponse:
|
281
|
+
def __init__(self, search: AsyncSearchResource) -> None:
|
282
|
+
self._search = search
|
283
|
+
|
284
|
+
self.execute_index_query = async_to_raw_response_wrapper(
|
285
|
+
search.execute_index_query,
|
286
|
+
)
|
287
|
+
self.execute_query = async_to_raw_response_wrapper(
|
288
|
+
search.execute_query,
|
289
|
+
)
|
290
|
+
|
291
|
+
|
292
|
+
class SearchResourceWithStreamingResponse:
|
293
|
+
def __init__(self, search: SearchResource) -> None:
|
294
|
+
self._search = search
|
295
|
+
|
296
|
+
self.execute_index_query = to_streamed_response_wrapper(
|
297
|
+
search.execute_index_query,
|
298
|
+
)
|
299
|
+
self.execute_query = to_streamed_response_wrapper(
|
300
|
+
search.execute_query,
|
301
|
+
)
|
302
|
+
|
303
|
+
|
304
|
+
class AsyncSearchResourceWithStreamingResponse:
|
305
|
+
def __init__(self, search: AsyncSearchResource) -> None:
|
306
|
+
self._search = search
|
307
|
+
|
308
|
+
self.execute_index_query = async_to_streamed_response_wrapper(
|
309
|
+
search.execute_index_query,
|
310
|
+
)
|
311
|
+
self.execute_query = async_to_streamed_response_wrapper(
|
312
|
+
search.execute_query,
|
313
|
+
)
|