httomo-backends 2.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- httomo_backends/methods_database/__init__.py +0 -0
- httomo_backends/methods_database/backends/httomolib/httomolib.yaml +34 -0
- httomo_backends/methods_database/backends/httomolib/httomolib_modules.yaml +4 -0
- httomo_backends/methods_database/backends/httomolibgpu/httomolibgpu.yaml +192 -0
- httomo_backends/methods_database/backends/httomolibgpu/httomolibgpu_modules.yaml +10 -0
- httomo_backends/methods_database/backends/tomopy/tomopy.yaml +454 -0
- httomo_backends/methods_database/backends/tomopy/tomopy_modules.yaml +10 -0
- httomo_backends/scripts/__init__.py +0 -0
- httomo_backends/scripts/yaml_templates_generator.py +249 -0
- httomo_backends/scripts/yaml_unsupported_tomopy_remove.py +105 -0
- httomo_backends/yaml_templates/__init__.py +0 -0
- httomo_backends/yaml_templates/httomo/httomo.data.hdf.loaders/standard_tomo.yaml +13 -0
- httomo_backends/yaml_templates/httomo/httomo.methods/calculate_stats.yaml +6 -0
- httomo_backends/yaml_templates/httomo/httomo.methods/save_intermediate_data.yaml +9 -0
- httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/adjust_range.yaml +5 -0
- httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/circ_mask.yaml +6 -0
- httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/gaussian_filter.yaml +6 -0
- httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/median_filter.yaml +5 -0
- httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/median_filter3d.yaml +4 -0
- httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/median_filter_nonfinite.yaml +5 -0
- httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_nan.yaml +4 -0
- httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_neg.yaml +4 -0
- httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_outlier.yaml +6 -0
- httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_outlier1d.yaml +6 -0
- httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_outlier3d.yaml +5 -0
- httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/remove_ring.yaml +12 -0
- httomo_backends/yaml_templates/tomopy/tomopy.misc.corr/sobel_filter.yaml +4 -0
- httomo_backends-2.1.dist-info/LICENSE +201 -0
- httomo_backends-2.1.dist-info/METADATA +19 -0
- httomo_backends-2.1.dist-info/RECORD +32 -0
- httomo_backends-2.1.dist-info/WHEEL +5 -0
- httomo_backends-2.1.dist-info/top_level.txt +1 -0
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CGLS:
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rotation:
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- httomolibgpu.misc.corr
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- httomolibgpu.misc.morph
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- httomolibgpu.misc.rescale
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- httomolibgpu.prep.alignment
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- httomolibgpu.prep.normalize
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- httomolibgpu.prep.phase
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- httomolibgpu.prep.stripe
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- httomolibgpu.recon.algorithm
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sim:
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save_result_default: False
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add_focal_spot_blur:
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pattern: all
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add_gaussian:
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add_rings:
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add_salt_pepper:
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+
save_result_default: False
|
|
81
|
+
padding: False
|
|
82
|
+
circ_mask:
|
|
83
|
+
pattern: all
|
|
84
|
+
output_dims_change: False
|
|
85
|
+
implementation: cpu
|
|
86
|
+
memory_gpu: None
|
|
87
|
+
save_result_default: False
|
|
88
|
+
padding: False
|
|
89
|
+
gaussian_filter:
|
|
90
|
+
pattern: all
|
|
91
|
+
output_dims_change: False
|
|
92
|
+
implementation: cpu
|
|
93
|
+
memory_gpu: None
|
|
94
|
+
save_result_default: False
|
|
95
|
+
padding: False
|
|
96
|
+
median_filter:
|
|
97
|
+
pattern: all
|
|
98
|
+
output_dims_change: False
|
|
99
|
+
implementation: cpu
|
|
100
|
+
memory_gpu: None
|
|
101
|
+
save_result_default: False
|
|
102
|
+
padding: False
|
|
103
|
+
median_filter3d:
|
|
104
|
+
pattern: all
|
|
105
|
+
output_dims_change: False
|
|
106
|
+
implementation: cpu
|
|
107
|
+
memory_gpu: None
|
|
108
|
+
save_result_default: False
|
|
109
|
+
padding: True
|
|
110
|
+
median_filter_nonfinite:
|
|
111
|
+
pattern: all
|
|
112
|
+
output_dims_change: False
|
|
113
|
+
implementation: cpu
|
|
114
|
+
memory_gpu: None
|
|
115
|
+
save_result_default: False
|
|
116
|
+
padding: False
|
|
117
|
+
remove_nan:
|
|
118
|
+
pattern: all
|
|
119
|
+
output_dims_change: False
|
|
120
|
+
implementation: cpu
|
|
121
|
+
memory_gpu: None
|
|
122
|
+
save_result_default: False
|
|
123
|
+
padding: False
|
|
124
|
+
remove_neg:
|
|
125
|
+
pattern: all
|
|
126
|
+
output_dims_change: False
|
|
127
|
+
implementation: cpu
|
|
128
|
+
memory_gpu: None
|
|
129
|
+
save_result_default: False
|
|
130
|
+
padding: False
|
|
131
|
+
remove_outlier:
|
|
132
|
+
pattern: all
|
|
133
|
+
output_dims_change: False
|
|
134
|
+
implementation: cpu
|
|
135
|
+
memory_gpu: None
|
|
136
|
+
save_result_default: False
|
|
137
|
+
padding: False
|
|
138
|
+
remove_outlier1d:
|
|
139
|
+
pattern: all
|
|
140
|
+
output_dims_change: False
|
|
141
|
+
implementation: cpu
|
|
142
|
+
memory_gpu: None
|
|
143
|
+
save_result_default: False
|
|
144
|
+
padding: False
|
|
145
|
+
remove_outlier3d:
|
|
146
|
+
pattern: all
|
|
147
|
+
output_dims_change: False
|
|
148
|
+
implementation: cpu
|
|
149
|
+
memory_gpu: None
|
|
150
|
+
save_result_default: False
|
|
151
|
+
padding: True
|
|
152
|
+
remove_ring:
|
|
153
|
+
pattern: all
|
|
154
|
+
output_dims_change: False
|
|
155
|
+
implementation: cpu
|
|
156
|
+
memory_gpu: None
|
|
157
|
+
save_result_default: False
|
|
158
|
+
padding: False
|
|
159
|
+
sobel_filter:
|
|
160
|
+
pattern: all
|
|
161
|
+
output_dims_change: False
|
|
162
|
+
implementation: cpu
|
|
163
|
+
memory_gpu: None
|
|
164
|
+
save_result_default: False
|
|
165
|
+
padding: False
|
|
166
|
+
morph:
|
|
167
|
+
downsample:
|
|
168
|
+
pattern: all
|
|
169
|
+
output_dims_change: True
|
|
170
|
+
implementation: cpu
|
|
171
|
+
memory_gpu: None
|
|
172
|
+
save_result_default: False
|
|
173
|
+
padding: False
|
|
174
|
+
pad:
|
|
175
|
+
pattern: all
|
|
176
|
+
output_dims_change: True
|
|
177
|
+
implementation: cpu
|
|
178
|
+
memory_gpu: None
|
|
179
|
+
save_result_default: False
|
|
180
|
+
padding: False
|
|
181
|
+
sino_360_to_180:
|
|
182
|
+
pattern: sinogram
|
|
183
|
+
output_dims_change: False
|
|
184
|
+
implementation: cpu
|
|
185
|
+
memory_gpu: None
|
|
186
|
+
save_result_default: False
|
|
187
|
+
padding: False
|
|
188
|
+
trim_sinogram:
|
|
189
|
+
pattern: sinogram
|
|
190
|
+
output_dims_change: True
|
|
191
|
+
implementation: cpu
|
|
192
|
+
memory_gpu: None
|
|
193
|
+
save_result_default: False
|
|
194
|
+
padding: False
|
|
195
|
+
upsample:
|
|
196
|
+
pattern: all
|
|
197
|
+
output_dims_change: True
|
|
198
|
+
implementation: cpu
|
|
199
|
+
memory_gpu: None
|
|
200
|
+
save_result_default: False
|
|
201
|
+
padding: False
|
|
202
|
+
prep:
|
|
203
|
+
alignment:
|
|
204
|
+
add_jitter:
|
|
205
|
+
pattern: projection
|
|
206
|
+
output_dims_change: False
|
|
207
|
+
implementation: cpu
|
|
208
|
+
memory_gpu: None
|
|
209
|
+
save_result_default: False
|
|
210
|
+
padding: False
|
|
211
|
+
add_noise:
|
|
212
|
+
pattern: all
|
|
213
|
+
output_dims_change: False
|
|
214
|
+
implementation: cpu
|
|
215
|
+
memory_gpu: None
|
|
216
|
+
save_result_default: False
|
|
217
|
+
padding: False
|
|
218
|
+
align_joint:
|
|
219
|
+
pattern: sinogram
|
|
220
|
+
output_dims_change: False
|
|
221
|
+
implementation: cpu
|
|
222
|
+
memory_gpu: None
|
|
223
|
+
save_result_default: False
|
|
224
|
+
padding: False
|
|
225
|
+
align_seq:
|
|
226
|
+
pattern: sinogram
|
|
227
|
+
output_dims_change: False
|
|
228
|
+
implementation: cpu
|
|
229
|
+
memory_gpu: None
|
|
230
|
+
save_result_default: False
|
|
231
|
+
padding: False
|
|
232
|
+
blur_edges:
|
|
233
|
+
pattern: projection
|
|
234
|
+
output_dims_change: False
|
|
235
|
+
implementation: cpu
|
|
236
|
+
memory_gpu: None
|
|
237
|
+
save_result_default: False
|
|
238
|
+
padding: False
|
|
239
|
+
distortion_correction_proj:
|
|
240
|
+
pattern: projection
|
|
241
|
+
output_dims_change: False
|
|
242
|
+
implementation: cpu
|
|
243
|
+
memory_gpu: None
|
|
244
|
+
save_result_default: False
|
|
245
|
+
padding: False
|
|
246
|
+
distortion_correction_sino:
|
|
247
|
+
pattern: sinogram
|
|
248
|
+
output_dims_change: False
|
|
249
|
+
implementation: cpu
|
|
250
|
+
memory_gpu: None
|
|
251
|
+
save_result_default: False
|
|
252
|
+
padding: False
|
|
253
|
+
scale:
|
|
254
|
+
pattern: projection
|
|
255
|
+
output_dims_change: False
|
|
256
|
+
implementation: cpu
|
|
257
|
+
memory_gpu: None
|
|
258
|
+
save_result_default: False
|
|
259
|
+
padding: False
|
|
260
|
+
shift_images:
|
|
261
|
+
pattern: projection
|
|
262
|
+
output_dims_change: False
|
|
263
|
+
implementation: cpu
|
|
264
|
+
memory_gpu: None
|
|
265
|
+
save_result_default: False
|
|
266
|
+
padding: False
|
|
267
|
+
normalize:
|
|
268
|
+
minus_log:
|
|
269
|
+
pattern: projection
|
|
270
|
+
output_dims_change: False
|
|
271
|
+
implementation: cpu
|
|
272
|
+
memory_gpu: None
|
|
273
|
+
save_result_default: False
|
|
274
|
+
padding: False
|
|
275
|
+
normalize:
|
|
276
|
+
pattern: projection
|
|
277
|
+
output_dims_change: False
|
|
278
|
+
implementation: cpu
|
|
279
|
+
memory_gpu: None
|
|
280
|
+
save_result_default: False
|
|
281
|
+
padding: False
|
|
282
|
+
normalize_roi:
|
|
283
|
+
pattern: projection
|
|
284
|
+
output_dims_change: False
|
|
285
|
+
implementation: cpu
|
|
286
|
+
memory_gpu: None
|
|
287
|
+
save_result_default: False
|
|
288
|
+
padding: False
|
|
289
|
+
normalize_bg:
|
|
290
|
+
pattern: projection
|
|
291
|
+
output_dims_change: False
|
|
292
|
+
implementation: cpu
|
|
293
|
+
memory_gpu: None
|
|
294
|
+
save_result_default: False
|
|
295
|
+
padding: False
|
|
296
|
+
normalize_nf:
|
|
297
|
+
pattern: projection
|
|
298
|
+
output_dims_change: False
|
|
299
|
+
implementation: cpu
|
|
300
|
+
memory_gpu: None
|
|
301
|
+
save_result_default: False
|
|
302
|
+
padding: False
|
|
303
|
+
phase:
|
|
304
|
+
retrieve_phase:
|
|
305
|
+
pattern: projection
|
|
306
|
+
output_dims_change: False
|
|
307
|
+
implementation: cpu
|
|
308
|
+
memory_gpu: None
|
|
309
|
+
save_result_default: False
|
|
310
|
+
padding: False
|
|
311
|
+
stripe:
|
|
312
|
+
remove_all_stripe:
|
|
313
|
+
pattern: sinogram
|
|
314
|
+
output_dims_change: False
|
|
315
|
+
implementation: cpu
|
|
316
|
+
memory_gpu: None
|
|
317
|
+
save_result_default: False
|
|
318
|
+
padding: False
|
|
319
|
+
remove_stripe_fw:
|
|
320
|
+
pattern: sinogram
|
|
321
|
+
output_dims_change: False
|
|
322
|
+
implementation: cpu
|
|
323
|
+
memory_gpu: None
|
|
324
|
+
save_result_default: False
|
|
325
|
+
padding: False
|
|
326
|
+
remove_stripe_ti:
|
|
327
|
+
pattern: sinogram
|
|
328
|
+
output_dims_change: False
|
|
329
|
+
implementation: cpu
|
|
330
|
+
memory_gpu: None
|
|
331
|
+
save_result_default: False
|
|
332
|
+
padding: False
|
|
333
|
+
remove_stripe_sf:
|
|
334
|
+
pattern: sinogram
|
|
335
|
+
output_dims_change: False
|
|
336
|
+
implementation: cpu
|
|
337
|
+
memory_gpu: None
|
|
338
|
+
save_result_default: False
|
|
339
|
+
padding: False
|
|
340
|
+
remove_stripe_based_sorting:
|
|
341
|
+
pattern: sinogram
|
|
342
|
+
output_dims_change: False
|
|
343
|
+
implementation: cpu
|
|
344
|
+
memory_gpu: None
|
|
345
|
+
save_result_default: False
|
|
346
|
+
padding: False
|
|
347
|
+
remove_stripe_based_filtering:
|
|
348
|
+
pattern: sinogram
|
|
349
|
+
output_dims_change: False
|
|
350
|
+
implementation: cpu
|
|
351
|
+
memory_gpu: None
|
|
352
|
+
save_result_default: False
|
|
353
|
+
padding: False
|
|
354
|
+
remove_stripe_based_fitting:
|
|
355
|
+
pattern: sinogram
|
|
356
|
+
output_dims_change: False
|
|
357
|
+
implementation: cpu
|
|
358
|
+
memory_gpu: None
|
|
359
|
+
save_result_default: False
|
|
360
|
+
padding: False
|
|
361
|
+
remove_large_stripe:
|
|
362
|
+
pattern: sinogram
|
|
363
|
+
output_dims_change: False
|
|
364
|
+
implementation: cpu
|
|
365
|
+
memory_gpu: None
|
|
366
|
+
save_result_default: False
|
|
367
|
+
padding: False
|
|
368
|
+
remove_dead_stripe:
|
|
369
|
+
pattern: sinogram
|
|
370
|
+
output_dims_change: False
|
|
371
|
+
implementation: cpu
|
|
372
|
+
memory_gpu: None
|
|
373
|
+
save_result_default: False
|
|
374
|
+
padding: False
|
|
375
|
+
remove_stripe_based_interpolation:
|
|
376
|
+
pattern: sinogram
|
|
377
|
+
output_dims_change: False
|
|
378
|
+
implementation: cpu
|
|
379
|
+
memory_gpu: None
|
|
380
|
+
save_result_default: False
|
|
381
|
+
padding: False
|
|
382
|
+
stripes_detect3d:
|
|
383
|
+
pattern: sinogram
|
|
384
|
+
implementation: cpu
|
|
385
|
+
output_dims_change: False
|
|
386
|
+
memory_gpu: None
|
|
387
|
+
save_result_default: False
|
|
388
|
+
padding: True
|
|
389
|
+
stripes_mask3d:
|
|
390
|
+
pattern: sinogram
|
|
391
|
+
output_dims_change: False
|
|
392
|
+
implementation: cpu
|
|
393
|
+
memory_gpu: None
|
|
394
|
+
save_result_default: False
|
|
395
|
+
padding: True
|
|
396
|
+
recon:
|
|
397
|
+
algorithm:
|
|
398
|
+
recon:
|
|
399
|
+
pattern: sinogram
|
|
400
|
+
output_dims_change: True
|
|
401
|
+
implementation: cpu
|
|
402
|
+
memory_gpu: None
|
|
403
|
+
save_result_default: True
|
|
404
|
+
padding: False
|
|
405
|
+
rotation:
|
|
406
|
+
find_center:
|
|
407
|
+
pattern: projection
|
|
408
|
+
output_dims_change: False
|
|
409
|
+
implementation: cpu
|
|
410
|
+
memory_gpu: None
|
|
411
|
+
save_result_default: False
|
|
412
|
+
padding: False
|
|
413
|
+
find_center_pc:
|
|
414
|
+
pattern: projection
|
|
415
|
+
output_dims_change: False
|
|
416
|
+
implementation: cpu
|
|
417
|
+
memory_gpu: None
|
|
418
|
+
save_result_default: True
|
|
419
|
+
padding: False
|
|
420
|
+
find_center_vo:
|
|
421
|
+
pattern: projection
|
|
422
|
+
output_dims_change: False
|
|
423
|
+
implementation: cpu
|
|
424
|
+
memory_gpu: None
|
|
425
|
+
save_result_default: False
|
|
426
|
+
padding: False
|
|
427
|
+
wrappers:
|
|
428
|
+
astra:
|
|
429
|
+
pattern: sinogram
|
|
430
|
+
output_dims_change: False
|
|
431
|
+
implementation: cpu
|
|
432
|
+
memory_gpu: None
|
|
433
|
+
save_result_default: False
|
|
434
|
+
padding: False
|
|
435
|
+
ufo_fbp:
|
|
436
|
+
pattern: sinogram
|
|
437
|
+
output_dims_change: False
|
|
438
|
+
implementation: cpu
|
|
439
|
+
memory_gpu: None
|
|
440
|
+
save_result_default: False
|
|
441
|
+
padding: False
|
|
442
|
+
ufo_dfi:
|
|
443
|
+
pattern: sinogram
|
|
444
|
+
implementation: cpu
|
|
445
|
+
memory_gpu: None
|
|
446
|
+
save_result_default: False
|
|
447
|
+
padding: False
|
|
448
|
+
lprec:
|
|
449
|
+
pattern: sinogram
|
|
450
|
+
output_dims_change: True
|
|
451
|
+
implementation: cpu
|
|
452
|
+
memory_gpu: None
|
|
453
|
+
save_result_default: False
|
|
454
|
+
padding: False
|
|
File without changes
|