httomo-backends 0.8.0__py3-none-any.whl → 0.9.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (37) hide show
  1. httomo_backends/methods_database/packages/backends/httomolib/httomolib.yaml +8 -0
  2. httomo_backends/methods_database/packages/backends/httomolib/httomolib_modules.yaml +1 -0
  3. httomo_backends/methods_database/packages/backends/httomolibgpu/httomolibgpu.yaml +30 -2
  4. httomo_backends/methods_database/packages/backends/httomolibgpu/httomolibgpu_modules.yaml +1 -0
  5. httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/normalize.py +2 -2
  6. httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/phase.py +13 -77
  7. httomo_backends/methods_database/query.py +10 -0
  8. httomo_backends/pipelines_full/FBP2d_astra_directive.yaml +4 -2
  9. httomo_backends/pipelines_full/FBP3d_tomobar_denoising_directive.yaml +5 -3
  10. httomo_backends/pipelines_full/FBP3d_tomobar_directive.yaml +5 -3
  11. httomo_backends/pipelines_full/FBP3d_tomobar_noimagesaving_directive.yaml +5 -3
  12. httomo_backends/pipelines_full/FISTA3d_tomobar_directive.yaml +4 -2
  13. httomo_backends/pipelines_full/LPRec3d_tomobar_directive.yaml +5 -3
  14. httomo_backends/pipelines_full/deg360_distortion_FBP3d_tomobar_directive.yaml +5 -3
  15. httomo_backends/pipelines_full/deg360_paganin_FBP3d_tomobar_directive.yaml +3 -3
  16. httomo_backends/pipelines_full/sweep_center_FBP3d_tomobar_directive.yaml +3 -1
  17. httomo_backends/pipelines_full/sweep_paganin_FBP3d_tomobar_directive.yaml +2 -2
  18. httomo_backends/pipelines_full/titaren_center_pc_FBP3d_resample_directive.yaml +4 -2
  19. httomo_backends/scripts/yaml_pipelines_generator.py +9 -5
  20. httomo_backends/scripts/yaml_templates_generator.py +5 -0
  21. httomo_backends/yaml_templates/httomo/httomo.data.hdf.loaders/standard_tomo.yaml +1 -0
  22. httomo_backends/yaml_templates/httomolib/httomolib.misc.utils/data_checker.yaml +7 -0
  23. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.utils/data_checker.yaml +7 -0
  24. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.normalize/{normalize.yaml → dark_flat_field_correction.yaml} +1 -4
  25. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.normalize/minus_log.yaml +3 -0
  26. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.phase/paganin_filter_savu_legacy.yaml +7 -0
  27. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/CGLS3d_tomobar.yaml +0 -1
  28. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP2d_astra.yaml +0 -1
  29. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP3d_tomobar.yaml +0 -1
  30. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FISTA3d_tomobar.yaml +0 -1
  31. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/LPRec3d_tomobar.yaml +0 -5
  32. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/SIRT3d_tomobar.yaml +0 -1
  33. {httomo_backends-0.8.0.dist-info → httomo_backends-0.9.1.dist-info}/METADATA +1 -1
  34. {httomo_backends-0.8.0.dist-info → httomo_backends-0.9.1.dist-info}/RECORD +37 -33
  35. {httomo_backends-0.8.0.dist-info → httomo_backends-0.9.1.dist-info}/WHEEL +0 -0
  36. {httomo_backends-0.8.0.dist-info → httomo_backends-0.9.1.dist-info}/licenses/LICENSE +0 -0
  37. {httomo_backends-0.8.0.dist-info → httomo_backends-0.9.1.dist-info}/top_level.txt +0 -0
httomo_backends/methods_database/packages/backends/httomolib/httomolib.yaml CHANGED
@@ -1,4 +1,12 @@
1
1
  misc:
2
+ utils:
3
+ data_checker:
4
+ pattern: all
5
+ output_dims_change: False
6
+ implementation: cpu
7
+ memory_gpu: None
8
+ save_result_default: False
9
+ padding: False
2
10
  rescale:
3
11
  rescale_to_int:
4
12
  pattern: all
httomo_backends/methods_database/packages/backends/httomolib/httomolib_modules.yaml CHANGED
@@ -1,3 +1,4 @@
1
+ - httomolib.misc.utils
1
2
  - httomolib.misc.rescale
2
3
  - httomolib.misc.morph
3
4
  - httomolib.misc.images
httomo_backends/methods_database/packages/backends/httomolibgpu/httomolibgpu.yaml CHANGED
@@ -1,4 +1,14 @@
1
1
  misc:
2
+ utils:
3
+ data_checker:
4
+ pattern: all
5
+ output_dims_change: False
6
+ implementation: gpu_cupy
7
+ save_result_default: False
8
+ padding: False
9
+ memory_gpu:
10
+ multiplier: 1.0
11
+ method: direct
2
12
  corr:
3
13
  median_filter:
4
14
  pattern: all
@@ -68,7 +78,7 @@ misc:
68
78
  method: module
69
79
  prep:
70
80
  normalize:
71
- normalize:
81
+ dark_flat_field_correction:
72
82
  pattern: projection
73
83
  output_dims_change: False
74
84
  implementation: gpu_cupy
@@ -77,6 +87,15 @@ prep:
77
87
  memory_gpu:
78
88
  multiplier: None
79
89
  method: module
90
+ minus_log:
91
+ pattern: all
92
+ output_dims_change: False
93
+ implementation: gpu_cupy
94
+ save_result_default: False
95
+ padding: False
96
+ memory_gpu:
97
+ multiplier: 3.0
98
+ method: direct
80
99
  phase:
81
100
  paganin_filter:
82
101
  pattern: projection
@@ -86,7 +105,16 @@ prep:
86
105
  padding: False
87
106
  memory_gpu:
88
107
  multiplier: None
89
- method: module
108
+ method: iterative
109
+ paganin_filter_savu_legacy:
110
+ pattern: projection
111
+ output_dims_change: False
112
+ implementation: gpu_cupy
113
+ save_result_default: False
114
+ padding: False
115
+ memory_gpu:
116
+ multiplier: None
117
+ method: iterative
90
118
  alignment:
91
119
  distortion_correction_proj_discorpy:
92
120
  pattern: projection
httomo_backends/methods_database/packages/backends/httomolibgpu/httomolibgpu_modules.yaml CHANGED
@@ -1,3 +1,4 @@
1
+ - httomolibgpu.misc.utils
1
2
  - httomolibgpu.misc.corr
2
3
  - httomolibgpu.misc.denoise
3
4
  - httomolibgpu.misc.morph
httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/normalize.py CHANGED
@@ -3,11 +3,11 @@ import numpy as np
3
3
 
4
4
 
5
5
  __all__ = [
6
- "_calc_memory_bytes_normalize",
6
+ "_calc_memory_bytes_dark_flat_field_correction",
7
7
  ]
8
8
 
9
9
 
10
- def _calc_memory_bytes_normalize(
10
+ def _calc_memory_bytes_dark_flat_field_correction(
11
11
  non_slice_dims_shape: Tuple[int, int],
12
12
  dtype: np.dtype,
13
13
  **kwargs,
httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/phase.py CHANGED
@@ -23,89 +23,25 @@
23
23
  from typing import Tuple
24
24
  import numpy as np
25
25
 
26
- from httomo_backends.cufft import CufftType, cufft_estimate_2d
26
+ from httomolibgpu.prep.phase import paganin_filter, paganin_filter_savu_legacy
27
27
 
28
28
  __all__ = [
29
- "_calc_memory_bytes_paganin_filter",
29
+ "_calc_memory_bytes_for_slices_paganin_filter",
30
+ "_calc_memory_bytes_for_slices_paganin_filter_savu_legacy",
30
31
  ]
31
32
 
32
33
 
33
- def _calc_memory_bytes_paganin_filter(
34
- non_slice_dims_shape: Tuple[int, int],
34
+ def _calc_memory_bytes_for_slices_paganin_filter(
35
+ dims_shape: Tuple[int, int, int],
35
36
  dtype: np.dtype,
36
37
  **kwargs,
37
- ) -> Tuple[int, int]:
38
+ ) -> int:
39
+ return paganin_filter(dims_shape, calc_peak_gpu_mem=True, **kwargs)
38
40
 
39
- # Input (unpadded)
40
- unpadded_in_slice_size = np.prod(non_slice_dims_shape) * dtype.itemsize
41
41
 
42
- # estimate padding size here based on non_slice dimensions
43
- pad_tup = []
44
- for dim_len in non_slice_dims_shape:
45
- diff = __shift_bit_length(dim_len + 1) - dim_len
46
- if dim_len % 2 == 0:
47
- pad_width = diff // 2
48
- pad_width = (pad_width, pad_width)
49
- else:
50
- # need an uneven padding for odd-number lengths
51
- left_pad = diff // 2
52
- right_pad = diff - left_pad
53
- pad_width = (left_pad, right_pad)
54
- pad_tup.append(pad_width)
55
-
56
- # Padded input
57
- padded_in_slice_size = (
58
- (non_slice_dims_shape[0] + pad_tup[0][0] + pad_tup[0][1])
59
- * (non_slice_dims_shape[1] + pad_tup[1][0] + pad_tup[1][1])
60
- * dtype.itemsize
61
- )
62
-
63
- # Padded input cast to `complex64`
64
- complex_slice = padded_in_slice_size / dtype.itemsize * np.complex64().nbytes
65
-
66
- # Plan size for 2D FFT
67
- ny = non_slice_dims_shape[0] + pad_tup[0][0] + pad_tup[0][1]
68
- nx = non_slice_dims_shape[1] + pad_tup[1][0] + pad_tup[1][1]
69
- fftplan_slice_size = cufft_estimate_2d(
70
- nx=nx,
71
- ny=ny,
72
- fft_type=CufftType.CUFFT_C2C,
73
- )
74
-
75
- # Size of "reciprocal grid" generated, based on padded projections shape
76
- grid_size = np.prod((ny, nx)) * np.float32().nbytes
77
- filter_size = grid_size
78
-
79
- # Size of cropped/unpadded + cast to float32 result of 2D IFFT
80
- cropped_float32_res_slice = np.prod(non_slice_dims_shape) * np.float32().nbytes
81
-
82
- # Size of negative log of cropped float32 result of 2D IFFT
83
- negative_log_slice = cropped_float32_res_slice
84
-
85
- # If the FFT plan size is negligible for some reason, this changes where the peak GPU
86
- # memory usage occurs. Hence, the if/else branching below for calculating the total bytes.
87
- NEGLIGIBLE_FFT_PLAN_SIZE = 16
88
- if fftplan_slice_size < NEGLIGIBLE_FFT_PLAN_SIZE:
89
- tot_memory_bytes = int(
90
- unpadded_in_slice_size + padded_in_slice_size + complex_slice
91
- )
92
- else:
93
- tot_memory_bytes = int(
94
- unpadded_in_slice_size
95
- + padded_in_slice_size
96
- + complex_slice
97
- # The padded float32 array is deallocated when a copy is made when casting to complex64
98
- # and the variable `padded_tomo` is reassigned to the complex64 version
99
- - padded_in_slice_size
100
- + fftplan_slice_size
101
- + cropped_float32_res_slice
102
- + negative_log_slice
103
- )
104
-
105
- subtract_bytes = int(filter_size + grid_size)
106
-
107
- return (tot_memory_bytes, subtract_bytes)
108
-
109
-
110
- def __shift_bit_length(x: int) -> int:
111
- return 1 << (x - 1).bit_length()
42
+ def _calc_memory_bytes_for_slices_paganin_filter_savu_legacy(
43
+ dims_shape: Tuple[int, int, int],
44
+ dtype: np.dtype,
45
+ **kwargs,
46
+ ) -> int:
47
+ return paganin_filter_savu_legacy(dims_shape, calc_peak_gpu_mem=True, **kwargs)
httomo_backends/methods_database/query.py CHANGED
@@ -143,6 +143,16 @@ class MethodsDatabaseQuery:
143
143
  )
144
144
  return memory_bytes
145
145
 
146
+ def calculate_memory_bytes_for_slices(
147
+ self, dims_shape: Tuple[int, int, int], dtype: np.dtype, **kwargs
148
+ ) -> int:
149
+ smodule = self._import_supporting_funcs_module()
150
+ module_mem: Callable = getattr(
151
+ smodule, "_calc_memory_bytes_for_slices_" + self.method_name
152
+ )
153
+ memory_bytes: int = module_mem(dims_shape, dtype, **kwargs)
154
+ return memory_bytes
155
+
146
156
  def calculate_output_dims(
147
157
  self, non_slice_dims_shape: Tuple[int, int], **kwargs
148
158
  ) -> Tuple[int, int]:
httomo_backends/pipelines_full/FBP2d_astra_directive.yaml CHANGED
@@ -1,9 +1,11 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
+ - method: dark_flat_field_correction
4
+ module_path: httomolibgpu.prep.normalize
3
5
  - method: find_center_vo
4
6
  module_path: httomolibgpu.recon.rotation
5
- - method: normalize
6
- module_path: httomolibgpu.prep.normalize
7
+ - method: minus_log
8
+ module_path: httomolibgpu.prep.normalize
7
9
  - method: FBP2d_astra
8
10
  module_path: httomolibgpu.recon.algorithm
9
11
 
httomo_backends/pipelines_full/FBP3d_tomobar_denoising_directive.yaml CHANGED
@@ -1,13 +1,15 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
- - method: find_center_vo
4
- module_path: httomolibgpu.recon.rotation
5
3
  - method: remove_outlier
6
4
  module_path: httomolibgpu.misc.corr
7
- - method: normalize
5
+ - method: dark_flat_field_correction
8
6
  module_path: httomolibgpu.prep.normalize
7
+ - method: find_center_vo
8
+ module_path: httomolibgpu.recon.rotation
9
9
  - method: remove_all_stripe
10
10
  module_path: httomolibgpu.prep.stripe
11
+ - method: minus_log
12
+ module_path: httomolibgpu.prep.normalize
11
13
  - method: FBP3d_tomobar
12
14
  module_path: httomolibgpu.recon.algorithm
13
15
  - method: total_variation_PD
httomo_backends/pipelines_full/FBP3d_tomobar_directive.yaml CHANGED
@@ -1,13 +1,15 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
- - method: find_center_vo
4
- module_path: httomolibgpu.recon.rotation
5
3
  - method: remove_outlier
6
4
  module_path: httomolibgpu.misc.corr
7
- - method: normalize
5
+ - method: dark_flat_field_correction
8
6
  module_path: httomolibgpu.prep.normalize
7
+ - method: find_center_vo
8
+ module_path: httomolibgpu.recon.rotation
9
9
  - method: remove_all_stripe
10
10
  module_path: httomolibgpu.prep.stripe
11
+ - method: minus_log
12
+ module_path: httomolibgpu.prep.normalize
11
13
  - method: FBP3d_tomobar
12
14
  module_path: httomolibgpu.recon.algorithm
13
15
  - method: calculate_stats
httomo_backends/pipelines_full/FBP3d_tomobar_noimagesaving_directive.yaml CHANGED
@@ -1,12 +1,14 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
- - method: find_center_vo
4
- module_path: httomolibgpu.recon.rotation
5
3
  - method: remove_outlier
6
4
  module_path: httomolibgpu.misc.corr
7
- - method: normalize
5
+ - method: dark_flat_field_correction
8
6
  module_path: httomolibgpu.prep.normalize
7
+ - method: find_center_vo
8
+ module_path: httomolibgpu.recon.rotation
9
9
  - method: remove_stripe_based_sorting
10
10
  module_path: httomolibgpu.prep.stripe
11
+ - method: minus_log
12
+ module_path: httomolibgpu.prep.normalize
11
13
  - method: FBP3d_tomobar
12
14
  module_path: httomolibgpu.recon.algorithm
httomo_backends/pipelines_full/FISTA3d_tomobar_directive.yaml CHANGED
@@ -1,9 +1,11 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
+ - method: dark_flat_field_correction
4
+ module_path: httomolibgpu.prep.normalize
3
5
  - method: find_center_vo
4
6
  module_path: httomolibgpu.recon.rotation
5
- - method: normalize
6
- module_path: httomolibgpu.prep.normalize
7
+ - method: minus_log
8
+ module_path: httomolibgpu.prep.normalize
7
9
  - method: FISTA3d_tomobar
8
10
  module_path: httomolibgpu.recon.algorithm
9
11
  - method: calculate_stats
httomo_backends/pipelines_full/LPRec3d_tomobar_directive.yaml CHANGED
@@ -1,13 +1,15 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
- - method: find_center_vo
4
- module_path: httomolibgpu.recon.rotation
5
3
  - method: remove_outlier
6
4
  module_path: httomolibgpu.misc.corr
7
- - method: normalize
5
+ - method: dark_flat_field_correction
8
6
  module_path: httomolibgpu.prep.normalize
7
+ - method: find_center_vo
8
+ module_path: httomolibgpu.recon.rotation
9
9
  - method: remove_all_stripe
10
10
  module_path: httomolibgpu.prep.stripe
11
+ - method: minus_log
12
+ module_path: httomolibgpu.prep.normalize
11
13
  - method: LPRec3d_tomobar
12
14
  module_path: httomolibgpu.recon.algorithm
13
15
  - method: calculate_stats
httomo_backends/pipelines_full/deg360_distortion_FBP3d_tomobar_directive.yaml CHANGED
@@ -1,15 +1,17 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
- - method: find_center_360
4
- module_path: httomolibgpu.recon.rotation
5
- - method: normalize
3
+ - method: dark_flat_field_correction
6
4
  module_path: httomolibgpu.prep.normalize
7
5
  - method: distortion_correction_proj_discorpy
8
6
  module_path: httomolibgpu.prep.alignment
7
+ - method: find_center_360
8
+ module_path: httomolibgpu.recon.rotation
9
9
  - method: sino_360_to_180
10
10
  module_path: httomolibgpu.misc.morph
11
11
  - method: remove_stripe_based_sorting
12
12
  module_path: httomolibgpu.prep.stripe
13
+ - method: minus_log
14
+ module_path: httomolibgpu.prep.normalize
13
15
  - method: FBP3d_tomobar
14
16
  module_path: httomolibgpu.recon.algorithm
15
17
  - method: calculate_stats
httomo_backends/pipelines_full/deg360_paganin_FBP3d_tomobar_directive.yaml CHANGED
@@ -1,9 +1,9 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
+ - method: dark_flat_field_correction
4
+ module_path: httomolibgpu.prep.normalize
3
5
  - method: find_center_360
4
- module_path: httomolibgpu.recon.rotation
5
- - method: normalize
6
- module_path: httomolibgpu.prep.normalize
6
+ module_path: httomolibgpu.recon.rotation
7
7
  - method: sino_360_to_180
8
8
  module_path: httomolibgpu.misc.morph
9
9
  - method: remove_stripe_based_sorting
httomo_backends/pipelines_full/sweep_center_FBP3d_tomobar_directive.yaml CHANGED
@@ -1,7 +1,9 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
- - method: normalize
3
+ - method: dark_flat_field_correction
4
4
  module_path: httomolibgpu.prep.normalize
5
+ - method: minus_log
6
+ module_path: httomolibgpu.prep.normalize
5
7
  - method: FBP3d_tomobar
6
8
  module_path: httomolibgpu.recon.algorithm
7
9
  sweep_parameter: center
httomo_backends/pipelines_full/sweep_paganin_FBP3d_tomobar_directive.yaml CHANGED
@@ -1,9 +1,9 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
+ - method: dark_flat_field_correction
4
+ module_path: httomolibgpu.prep.normalize
3
5
  - method: find_center_vo
4
6
  module_path: httomolibgpu.recon.rotation
5
- - method: normalize
6
- module_path: httomolibgpu.prep.normalize
7
7
  - method: paganin_filter
8
8
  module_path: httomolibgpu.prep.phase
9
9
  sweep_parameter: ratio_delta_beta
httomo_backends/pipelines_full/titaren_center_pc_FBP3d_resample_directive.yaml CHANGED
@@ -1,11 +1,13 @@
1
1
  - method: standard_tomo
2
2
  module_path: httomo.data.hdf.loaders
3
+ - method: dark_flat_field_correction
4
+ module_path: httomolibgpu.prep.normalize
3
5
  - method: find_center_pc
4
6
  module_path: httomolibgpu.recon.rotation
5
- - method: normalize
6
- module_path: httomolibgpu.prep.normalize
7
7
  - method: remove_stripe_ti
8
8
  module_path: httomolibgpu.prep.stripe
9
+ - method: minus_log
10
+ module_path: httomolibgpu.prep.normalize
9
11
  - method: FBP3d_tomobar
10
12
  module_path: httomolibgpu.recon.algorithm
11
13
  - method: data_resampler
httomo_backends/scripts/yaml_pipelines_generator.py CHANGED
@@ -94,6 +94,7 @@ def yaml_pipelines_generator(
94
94
  with open(path_to_pipelines, "r") as file:
95
95
  try:
96
96
  pipeline_file_content = yaml.load(file)
97
+ # print(f"Loading pipeline: {file.name}") # useful for debugging
97
98
  except OSError as e:
98
99
  print("loading yaml file with methods failed", e)
99
100
 
@@ -227,17 +228,20 @@ def yaml_pipelines_generator(
227
228
  indent=0,
228
229
  )
229
230
  pipeline_full += yaml_template_method
230
- elif "normalize" in module_name:
231
+ elif "dark_flat_field_correction" in method_name:
231
232
  pipeline_full.yaml_set_comment_before_after_key(
232
233
  i,
233
- "--- Normalisation of projection data using collected flats/darks images. --- ",
234
+ "--- Flat-field and dark-field projection correction. --- ",
234
235
  indent=0,
235
236
  )
236
237
  pipeline_full += yaml_template_method
237
- pipeline_full[i]["parameters"].yaml_add_eol_comment(
238
- key="minus_log",
239
- comment="If Paganin method is used bellow, set it to 'false'.",
238
+ elif "minus_log" in method_name:
239
+ pipeline_full.yaml_set_comment_before_after_key(
240
+ i,
241
+ "--- Negative log is required for reconstruction to convert raw intensity measurements into the line integrals of attenuation. --- ",
242
+ indent=0,
240
243
  )
244
+ pipeline_full += yaml_template_method
241
245
  elif "phase" in module_name:
242
246
  pipeline_full.yaml_set_comment_before_after_key(
243
247
  i,
httomo_backends/scripts/yaml_templates_generator.py CHANGED
@@ -221,6 +221,11 @@ def _get_discard_keys() -> List[str]:
221
221
  "step_xy",
222
222
  "jpeg_quality",
223
223
  "watermark_vals",
224
+ "power_of_2_oversampling",
225
+ "power_of_2_cropping",
226
+ "min_mem_usage_filter",
227
+ "min_mem_usage_ifft2",
228
+ "calc_peak_gpu_mem",
224
229
  ]
225
230
  return discard_keys
226
231
 
httomo_backends/yaml_templates/httomo/httomo.data.hdf.loaders/standard_tomo.yaml CHANGED
@@ -15,3 +15,4 @@
15
15
  stop: null
16
16
  darks: null
17
17
  flats: null
18
+ continuous_scan_subset: null
httomo_backends/yaml_templates/httomolib/httomolib.misc.utils/data_checker.yaml ADDED
@@ -0,0 +1,7 @@
1
+ - method: data_checker
2
+ module_path: httomolib.misc.utils
3
+ parameters:
4
+ infsnans_correct: true
5
+ zeros_warning: false
6
+ data_to_method_name: null
7
+ verbosity: true
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.utils/data_checker.yaml ADDED
@@ -0,0 +1,7 @@
1
+ - method: data_checker
2
+ module_path: httomolibgpu.misc.utils
3
+ parameters:
4
+ infsnans_correct: true
5
+ zeros_warning: false
6
+ data_to_method_name: null
7
+ verbosity: true
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.normalize/{normalize.yaml → dark_flat_field_correction.yaml} RENAMED
@@ -1,9 +1,6 @@
1
- - method: normalize
1
+ - method: dark_flat_field_correction
2
2
  module_path: httomolibgpu.prep.normalize
3
3
  parameters:
4
4
  flats_multiplier: 1.0
5
5
  darks_multiplier: 1.0
6
6
  cutoff: 10.0
7
- minus_log: true
8
- nonnegativity: false
9
- remove_nans: false
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.normalize/minus_log.yaml ADDED
@@ -0,0 +1,3 @@
1
+ - method: minus_log
2
+ module_path: httomolibgpu.prep.normalize
3
+ parameters: {}
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.phase/paganin_filter_savu_legacy.yaml ADDED
@@ -0,0 +1,7 @@
1
+ - method: paganin_filter_savu_legacy
2
+ module_path: httomolibgpu.prep.phase
3
+ parameters:
4
+ pixel_size: 1.28
5
+ distance: 1.0
6
+ energy: 53.0
7
+ ratio_delta_beta: 250
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/CGLS3d_tomobar.yaml CHANGED
@@ -7,4 +7,3 @@
7
7
  recon_mask_radius: 0.95
8
8
  iterations: 20
9
9
  nonnegativity: true
10
- neglog: false
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP2d_astra.yaml CHANGED
@@ -8,4 +8,3 @@
8
8
  filter_d: null
9
9
  recon_size: null
10
10
  recon_mask_radius: 0.95
11
- neglog: false
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP3d_tomobar.yaml CHANGED
@@ -6,4 +6,3 @@
6
6
  filter_freq_cutoff: 0.35
7
7
  recon_size: null
8
8
  recon_mask_radius: 0.95
9
- neglog: false
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FISTA3d_tomobar.yaml CHANGED
@@ -12,4 +12,3 @@
12
12
  regularisation_iterations: 50
13
13
  regularisation_half_precision: true
14
14
  nonnegativity: true
15
- neglog: false
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/LPRec3d_tomobar.yaml CHANGED
@@ -7,8 +7,3 @@
7
7
  filter_freq_cutoff: 1.0
8
8
  recon_size: null
9
9
  recon_mask_radius: 0.95
10
- power_of_2_oversampling: true
11
- power_of_2_cropping: false
12
- min_mem_usage_filter: true
13
- min_mem_usage_ifft2: true
14
- neglog: false
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/SIRT3d_tomobar.yaml CHANGED
@@ -7,4 +7,3 @@
7
7
  recon_mask_radius: 0.95
8
8
  iterations: 300
9
9
  nonnegativity: true
10
- neglog: false
{httomo_backends-0.8.0.dist-info → httomo_backends-0.9.1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: httomo-backends
3
- Version: 0.8.0
3
+ Version: 0.9.1
4
4
  Summary: Supplementary files for HTTomo backends.
5
5
  Author: Garry ODonnell, Jacob Williamson
6
6
  Author-email: Daniil Kazantsev <daniil.kazantsev@diamond.ac.uk>, Yousef Moazzam <yousef.moazzam@diamond.ac.uk>, Jessica Verschoyle <jessica.verschoyle@diamond.ac.uk>, Naman Gera <naman.gera@diamond.ac.uk>, scientificsoftware@diamond.ac.uk
{httomo_backends-0.8.0.dist-info → httomo_backends-0.9.1.dist-info}/RECORD RENAMED
@@ -1,14 +1,14 @@
1
1
  httomo_backends/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
2
2
  httomo_backends/cufft.py,sha256=mhxI6NeaEdX6-bFEHdQ2RZmf9Iu7LzVQZsJP6OLCjwQ,3283
3
3
  httomo_backends/methods_database/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
4
- httomo_backends/methods_database/query.py,sha256=8jZQTmE351Me0Todn3NzyIjfZhLkzoJmagFGWAegYDw,5890
4
+ httomo_backends/methods_database/query.py,sha256=kjWuhkGhs7Sdqm4yUpHutVHxjWTq0abGVi-FEXesFzA,6298
5
5
  httomo_backends/methods_database/packages/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
6
6
  httomo_backends/methods_database/packages/httomo.yaml,sha256=tI3D-7IJcdu4EbKwjsje5MVKihOr3oswHzOrxtpBYBQ,535
7
- httomo_backends/methods_database/packages/backends/httomolib/httomolib.yaml,sha256=8l2Z6GGlXIIe2vcX85GK4wis5zxhgmg7EmlwLMV_rtI,938
8
- httomo_backends/methods_database/packages/backends/httomolib/httomolib_modules.yaml,sha256=tbvivxcAc90Wu36v1yFnGN-WqBIA1NHGWrg_D28UXi8,117
7
+ httomo_backends/methods_database/packages/backends/httomolib/httomolib.yaml,sha256=JMi2qB1HAYN9yjoS9M_qjcVERIGN6Ok7oVsERfY7syE,1119
8
+ httomo_backends/methods_database/packages/backends/httomolib/httomolib_modules.yaml,sha256=LnjKM2EnAhmC7L_yXi_Mg5hhSWc35sGFhlH1PP1FI-8,140
9
9
  httomo_backends/methods_database/packages/backends/httomolibgpu/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
10
- httomo_backends/methods_database/packages/backends/httomolibgpu/httomolibgpu.yaml,sha256=OCAjJSM5PlfkN3kkXKW9QWhr1WGWfFIToNUQFrj_dFQ,5340
11
- httomo_backends/methods_database/packages/backends/httomolibgpu/httomolibgpu_modules.yaml,sha256=HZWQ74Ygi25hjNg7wR9muPDdmN8STtOMY-LXWaTfspc,282
10
+ httomo_backends/methods_database/packages/backends/httomolibgpu/httomolibgpu.yaml,sha256=aURnvUvHB7dfrUsUi9QJyHKhAbDnzFaIEbhsnLaDhzo,6061
11
+ httomo_backends/methods_database/packages/backends/httomolibgpu/httomolibgpu_modules.yaml,sha256=i58Fb01apGyJQxc3_xxDtvHuzcQAB7AdXkHPs_0q85E,308
12
12
  httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
13
13
  httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/misc/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
14
14
  httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/misc/corr.py,sha256=rwO9JEyefb4_6cgqn3MkFtoiDloO9N2cYqTNgVTU_A0,417
@@ -16,8 +16,8 @@ httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs
16
16
  httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/misc/morph.py,sha256=FVqYI5iCmHJyLfHmgltIh7PPWr-cMK3Tpcs4EnCrqjc,4323
17
17
  httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/misc/rescale.py,sha256=iFE8X-GR9zjuFLbBE_glQL8wMoXOjkzcaleflm8VVzA,574
18
18
  httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
19
- httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/normalize.py,sha256=Ekxyp3j5bpg2-4iZmXI49VEBFFYUV6rfYBEqGdaqV6M,645
20
- httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/phase.py,sha256=gzrQJ-T2iBqhlWq3LmXKn_sLK5K__u1LtxoZYZjBDsQ,4070
19
+ httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/normalize.py,sha256=EdUrUZ1TWKUzKAFwoml_A7v6nchrRbAnElUGbA5xwHQ,679
20
+ httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/phase.py,sha256=LCj4iNuZjtrDwvL21ilfWGem4uXm2bUPEk30cZEyuN4,1759
21
21
  httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/prep/stripe.py,sha256=KnS8IpcXaLeiIWr4qAKwOrcK1vS9zrU6u5gOITZ159k,4623
22
22
  httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/recon/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
23
23
  httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/recon/algorithm.py,sha256=76Fl19BNMm2mo1gciAe_08QWSe5xmU5R2cpTFjelha0,21931
@@ -32,26 +32,26 @@ httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/prep/
32
32
  httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/prep/stripe.py,sha256=SzQRDvKrWKMIyQtF4PHhtk0t6GCX3nltZSkepKQhvV8,1725
33
33
  httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/recon/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
34
34
  httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/recon/algorithm.py,sha256=0v_zIq46Tm55Rm46s3GZhXZ-V07sf_YgbA-qv3AVT-c,1385
35
- httomo_backends/pipelines_full/FBP2d_astra_directive.yaml,sha256=BAT4wUa3nOacHRAStkeUgOfp1gMizsQnMaBISSMZlIo,261
36
- httomo_backends/pipelines_full/FBP3d_tomobar_denoising_directive.yaml,sha256=Ycu8X7mS2n872e0ji4btPLjSTYgEhcZVPeMEeI6MPAk,644
37
- httomo_backends/pipelines_full/FBP3d_tomobar_directive.yaml,sha256=QyqyAmWZjmcgV0PjhgmZtSjytHt8BeRLncH4hkJRmcs,574
38
- httomo_backends/pipelines_full/FBP3d_tomobar_noimagesaving_directive.yaml,sha256=uute7GdEEshbnmljjeyDi3Z5aqZftBTvo7Ti4wKgzhk,403
39
- httomo_backends/pipelines_full/FISTA3d_tomobar_directive.yaml,sha256=xuBtnN3vT2tfpKwmW0CH12CRXeV2evNN2hpdPul9L6c,445
40
- httomo_backends/pipelines_full/LPRec3d_tomobar_directive.yaml,sha256=c6c-cXCstUgLVqprfMFVdxzcTCeE8H-Dnhq7kmSIhYc,577
35
+ httomo_backends/pipelines_full/FBP2d_astra_directive.yaml,sha256=jIsGyQiqBzNawY0pVVpfjNjdtHFAEiMoYW_UfjXfgBM,344
36
+ httomo_backends/pipelines_full/FBP3d_tomobar_denoising_directive.yaml,sha256=Uh_2cZenybVwBqs7yTSAwse491buCrRnN7ch40ARSig,726
37
+ httomo_backends/pipelines_full/FBP3d_tomobar_directive.yaml,sha256=avc7Sfy6rf3ejvJnTq5we2UDVG41xgOoto6r7iX2U50,657
38
+ httomo_backends/pipelines_full/FBP3d_tomobar_noimagesaving_directive.yaml,sha256=Z2RqYrjAUJKCXkw0RaM_UwxawY0hnhMzQt9TgnIRCFo,483
39
+ httomo_backends/pipelines_full/FISTA3d_tomobar_directive.yaml,sha256=zxQVf68XnP_QXelzdN2OneawZ4BpklqtDu3UDeaNeUI,527
40
+ httomo_backends/pipelines_full/LPRec3d_tomobar_directive.yaml,sha256=f5uIcyufLcDDmLw6EC9VwsOpl0Dh2NARBUZ_4Fh7CiY,659
41
41
  httomo_backends/pipelines_full/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
42
- httomo_backends/pipelines_full/deg360_distortion_FBP3d_tomobar_directive.yaml,sha256=3Ht3yAzi97VW29OfvDE9j_p3NYbZfHDlfZMuRivsdKo,676
43
- httomo_backends/pipelines_full/deg360_paganin_FBP3d_tomobar_directive.yaml,sha256=q15zplcnr4i5EFw4F0pi2-dhqxvOkhLyAjqnVQMnoi0,653
44
- httomo_backends/pipelines_full/sweep_center_FBP3d_tomobar_directive.yaml,sha256=ERai5NvyAQz9-1EAdMUw3XkjlMvZhh6LCtXQpRh7mv4,277
45
- httomo_backends/pipelines_full/sweep_paganin_FBP3d_tomobar_directive.yaml,sha256=Y1K7Dl_Bs_6nU_oBGEEchn3l8TL0VSKq023IDQU4ZPo,395
46
- httomo_backends/pipelines_full/titaren_center_pc_FBP3d_resample_directive.yaml,sha256=lhT-jE2karklr_-cgEyvPRYLVwNGJgpf8XBI1r1TMLc,574
42
+ httomo_backends/pipelines_full/deg360_distortion_FBP3d_tomobar_directive.yaml,sha256=Hf-Gbemiv09CigWGqpezuKzcVa4e-TBc3GmpszCAxSw,758
43
+ httomo_backends/pipelines_full/deg360_paganin_FBP3d_tomobar_directive.yaml,sha256=mI6LAgOmd5Vqcx8Dqtb0_NT2opBO-kIzBbUb7xvEFV0,670
44
+ httomo_backends/pipelines_full/sweep_center_FBP3d_tomobar_directive.yaml,sha256=-RDXP6L_Z_6DYZITjeSPagJjhXuRXS0FeZrBrknSag8,359
45
+ httomo_backends/pipelines_full/sweep_paganin_FBP3d_tomobar_directive.yaml,sha256=W071aoUsP7BGYzv2zq0f_ZouvoSSb4u0_Ky52NrEQgs,412
46
+ httomo_backends/pipelines_full/titaren_center_pc_FBP3d_resample_directive.yaml,sha256=9tULNx9WIqaqlpYeA4z29F0r7Bbq-Sn4tiR92uepGbg,654
47
47
  httomo_backends/pipelines_full/tomopy_gridrec_directive.yaml,sha256=NlrX-mqyzjJvwGotTLwosBnC4d9pPRNB1JWFA7YXHuM,533
48
48
  httomo_backends/scripts/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
49
49
  httomo_backends/scripts/json_pipelines_generator.py,sha256=iWTsYr1i0Ei77Imaml5HXWvZUUeX-tkU1WRIdxskV3M,8322
50
- httomo_backends/scripts/yaml_pipelines_generator.py,sha256=nY66CcAc2HK8ViUyOEk1ezQsEEVylD3HfhfWkaA6e3k,17030
51
- httomo_backends/scripts/yaml_templates_generator.py,sha256=NjE5q8YXxkXjA-9WTg4YB8ccawNA0veeJE1C8yyWqlI,8532
50
+ httomo_backends/scripts/yaml_pipelines_generator.py,sha256=ZwJSOIgZksrEcQUD4lvvXG6LiWfsDp6qe9ew5AI1xI4,17285
51
+ httomo_backends/scripts/yaml_templates_generator.py,sha256=Bb6qOPYRGiSZujMk65A59zCzuLZqSPkbZL3B-ypxX4k,8690
52
52
  httomo_backends/scripts/yaml_unsupported_tomopy_remove.py,sha256=R3ZAfFgpVsBWS7zBjLlU83-66nawo7EBegFsIAHBWmQ,3715
53
53
  httomo_backends/yaml_templates/httomo/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
54
- httomo_backends/yaml_templates/httomo/httomo.data.hdf.loaders/standard_tomo.yaml,sha256=t81Y-sNTPwOu9UCwGUrTYjIHHSjjQVdtwpf5n7E6YHw,535
54
+ httomo_backends/yaml_templates/httomo/httomo.data.hdf.loaders/standard_tomo.yaml,sha256=mFGaYZZrE_dft7FE9Ngm-vXsd3dTftgwwjmLUCUkEZM,568
55
55
  httomo_backends/yaml_templates/httomo/httomo.methods/calculate_stats.yaml,sha256=rG4e2yEJ2flK-tGRj1FbRWXnSHNWYrShzMaPznbObdw,133
56
56
  httomo_backends/yaml_templates/httomo/httomo.methods/save_intermediate_data.yaml,sha256=pEUY6KqGVKdUWIfRob1CP-qTmsl7pjCM_NtsA0mnjj4,219
57
57
  httomo_backends/yaml_templates/httomolib/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -59,6 +59,7 @@ httomo_backends/yaml_templates/httomolib/httomolib.misc.images/save_to_images.ya
59
59
  httomo_backends/yaml_templates/httomolib/httomolib.misc.morph/data_reducer.yaml,sha256=RYCat3aMz6fr57Y2zeHVVJwXQDrU-ihV2eqV9MyBOPk,105
60
60
  httomo_backends/yaml_templates/httomolib/httomolib.misc.rescale/rescale_to_int.yaml,sha256=UoMe5tiq531UyE0NOCTcu1MRLDq74sokHSHaK-r7Dog,195
61
61
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+ httomo_backends/yaml_templates/httomolib/httomolib.misc.utils/data_checker.yaml,sha256=8UwM4K_u3KITvYtgKEXDC7h2LvZQJlRcmJqlgbf3p1g,175
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@@ -68,19 +69,22 @@ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.denoise/total_vari
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.utils/data_checker.yaml,sha256=edpl5jnuYWKL11LkqkekfMbkBXeYdMJxeBgFYTRLfu0,178
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- httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.normalize/normalize.yaml,sha256=PIfA4jwCmnWtz7V5n0Zng8lPvD4h1YyIriBSL39CtVM,214
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.normalize/dark_flat_field_correction.yaml,sha256=2ZVyqLaxVOJcyCZ3aCZP97g9iHOPZVeDs46VZFRpQpg,163
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.normalize/minus_log.yaml,sha256=qQKxL4hXjpqZDOEqFr-eru6_R9giQXTF3h2KsXVwBOg,80
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.phase/paganin_filter_savu_legacy.yaml,sha256=xj9kPKDJPQnMOHSLVfJQzu-DiphU9MtOIaWqZIOZLwk,172
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- httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/CGLS3d_tomobar.yaml,sha256=oWoW2vYNXyAeQ81NaV865A0K8XDi3QIbzV9WcRQqi_A,276
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- httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP2d_astra.yaml,sha256=MxUbW-dMxMrI4Exn5mgh2ovie4Ldv1Eb-zS68ETsNCU,301
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- httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP3d_tomobar.yaml,sha256=H9-PTd8qW2qXqgHYw-NfZGgy2yut7ReKsbsR3x0_OOA,261
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- httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FISTA3d_tomobar.yaml,sha256=i2K7Yc19VY6uZZR8bVjb85jpWIShlM_yCGD-Z5Eb-5E,442
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- httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/LPRec3d_tomobar.yaml,sha256=qqHNsYxW4D3QggXkJQGFSLKZ0mR4h_LIxR379g51HVc,411
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- httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/SIRT3d_tomobar.yaml,sha256=oom622LQ8xAZbZiHm4t0PSKKsMkX5G743vVBqRbMQek,277
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/CGLS3d_tomobar.yaml,sha256=Hv1hPa0Q_9Ck_gEDqhcOC06zygIunsvcRPQKy-z2Ia8,258
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP2d_astra.yaml,sha256=QTtdZkiDpbPODWanCtVRMEwn_q7qJmbDS5Pis8OzlzE,283
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP3d_tomobar.yaml,sha256=vMc5nKi5kCv4b0uEc8L-rX7vY78uG6aWBAxvaHnmrQs,243
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FISTA3d_tomobar.yaml,sha256=ZudW6q9poUfsfWpWn_TPSVvPeBIXsshb5fuVfYXhgKg,424
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/LPRec3d_tomobar.yaml,sha256=cwARAcP_-YbNuDr6qtFU_uL0_00rcETyMNaPFa2CcLs,267
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/SIRT3d_tomobar.yaml,sha256=yuZVlfD-XrPjcMYqi4QDrbmPKSullbGNU8mulVSRW-4,259
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@@ -144,8 +148,8 @@ httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_zingers.yaml,sha256
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  httomo_backends/yaml_templates/tomopy/tomopy.sim.project/project2.yaml,sha256=5raeQ-w9nS9mbAzn2ZqhPjdcyfLOkkJflKNStdEnYRA,238
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- httomo_backends-0.8.0.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
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- httomo_backends-0.8.0.dist-info/METADATA,sha256=G9IVCwxGSE39qlVAwr1LCubkFrjMeJHUXDuOuqnjqYU,2272
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- httomo_backends-0.8.0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- httomo_backends-0.8.0.dist-info/top_level.txt,sha256=v4x8d4CeEyMwo8QoqIvL_p-WoXAVD1bVnASPIrLjSTg,16
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- httomo_backends-0.8.0.dist-info/RECORD,,
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+ httomo_backends-0.9.1.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
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+ httomo_backends-0.9.1.dist-info/METADATA,sha256=OlXNJspw7aBRdZ3L4yC_-_q4yFhuKpg0we2tjMiQAXo,2272
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+ httomo_backends-0.9.1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ httomo_backends-0.9.1.dist-info/top_level.txt,sha256=v4x8d4CeEyMwo8QoqIvL_p-WoXAVD1bVnASPIrLjSTg,16
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+ httomo_backends-0.9.1.dist-info/RECORD,,