httomo-backends 0.6.1__py3-none-any.whl → 0.6.3__py3-none-any.whl

httomo_backends/pipelines_full/titaren_center_pc_FBP3d_resample_directive.yaml

@@ -0,0 +1,18 @@
+- method: standard_tomo
+  module_path: httomo.data.hdf.loaders
+- method: find_center_pc
+  module_path: httomolibgpu.recon.rotation
+- method: normalize
+  module_path: httomolibgpu.prep.normalize
+- method: remove_stripe_ti
+  module_path: httomolibgpu.prep.stripe
+- method: FBP3d_tomobar
+  module_path: httomolibgpu.recon.algorithm
+- method: data_resampler
+  module_path: httomolibgpu.misc.morph
+- method: calculate_stats
+  module_path: httomo.methods
+- method: rescale_to_int
+  module_path: httomolib.misc.rescale
+- method: save_to_images
+  module_path: httomolib.misc.images

httomo_backends/scripts/yaml_pipelines_generator.py

@@ -31,11 +31,14 @@ import ruamel.yaml
 import httomo_backends
 import yaml
 
-from httomo import __version__ as httomo_version
+try:
+    from httomo import __version__ as httomo_version
+except:
+    httomo_version = "2.6"  # temporary version fix for sphinx build
+    pass
 
 CS = ruamel.yaml.comments.CommentedSeq  # defaults to block style
 
-
 class SweepRange:
     """SweepRange class."""
 
@@ -213,6 +216,17 @@ def yaml_pipelines_generator(
                     key="metadata_path",
                     comment="Provide an absolute path to the text file with distortion coefficients.",
                 )
+            elif "data_resampler" in method_name:
+                pipeline_full.yaml_set_comment_before_after_key(
+                    i,
+                    "--- Down/up sampling the data. --- ",
+                    indent=0,
+                )
+                pipeline_full += yaml_template_method
+                pipeline_full[i]["parameters"].yaml_add_eol_comment(
+                    key="newshape",
+                    comment="Provide a new shape for a 2D slice, e.g. [256, 256].",
+                )
             elif "sino_360_to_180" in method_name:
                 pipeline_full.yaml_set_comment_before_after_key(
                     i,

{httomo_backends-0.6.1.dist-info → httomo_backends-0.6.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: httomo-backends
-Version: 0.6.1
+Version: 0.6.3
 Summary: Supplementary files for HTTomo backends.
 Author: Garry ODonnell, Jacob Williamson
 Author-email: Daniil Kazantsev <daniil.kazantsev@diamond.ac.uk>, Yousef Moazzam <yousef.moazzam@diamond.ac.uk>, Jessica Verschoyle <jessica.verschoyle@diamond.ac.uk>, Naman Gera <naman.gera@diamond.ac.uk>, scientificsoftware@diamond.ac.uk

{httomo_backends-0.6.1.dist-info → httomo_backends-0.6.3.dist-info}/RECORD

@@ -42,10 +42,11 @@ httomo_backends/pipelines_full/deg360_distortion_FBP3d_tomobar_directive.yaml,sh
 httomo_backends/pipelines_full/deg360_paganin_FBP3d_tomobar_directive.yaml,sha256=Qikcxqq_b3_9TpaOg5eSlYqfs1Vj9l30vx56cl5YoVI,660
 httomo_backends/pipelines_full/sweep_center_FBP3d_tomobar_directive.yaml,sha256=ERai5NvyAQz9-1EAdMUw3XkjlMvZhh6LCtXQpRh7mv4,277
 httomo_backends/pipelines_full/sweep_paganin_FBP3d_tomobar_directive.yaml,sha256=qoiY62uP5kHSL4qqSThJAaMwHq4PTN-dJSNRsBFxyQw,397
+httomo_backends/pipelines_full/titaren_center_pc_FBP3d_resample_directive.yaml,sha256=lhT-jE2karklr_-cgEyvPRYLVwNGJgpf8XBI1r1TMLc,574
 httomo_backends/pipelines_full/tomopy_gridrec_directive.yaml,sha256=NlrX-mqyzjJvwGotTLwosBnC4d9pPRNB1JWFA7YXHuM,533
 httomo_backends/scripts/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 httomo_backends/scripts/json_pipelines_generator.py,sha256=iWTsYr1i0Ei77Imaml5HXWvZUUeX-tkU1WRIdxskV3M,8322
-httomo_backends/scripts/yaml_pipelines_generator.py,sha256=TLiwfSeQY1y0TVnvwjZDJeBqZg91NbfpXLMdhbqpTTo,15940
+httomo_backends/scripts/yaml_pipelines_generator.py,sha256=9OeC8lEYSvGUEv0ceZMvuyL4kxoQ63NeIBMfOrlC_HQ,16540
 httomo_backends/scripts/yaml_templates_generator.py,sha256=NjE5q8YXxkXjA-9WTg4YB8ccawNA0veeJE1C8yyWqlI,8532
 httomo_backends/scripts/yaml_unsupported_tomopy_remove.py,sha256=R3ZAfFgpVsBWS7zBjLlU83-66nawo7EBegFsIAHBWmQ,3715
 httomo_backends/yaml_templates/httomo/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -142,8 +143,8 @@ httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_zingers.yaml,sha256
 httomo_backends/yaml_templates/tomopy/tomopy.sim.project/project.yaml,sha256=XBVhW5ZxT9C89tHcwDG7OOgcWNdNtQq97mqlBEoiMnU,202
 httomo_backends/yaml_templates/tomopy/tomopy.sim.project/project2.yaml,sha256=5raeQ-w9nS9mbAzn2ZqhPjdcyfLOkkJflKNStdEnYRA,238
 httomo_backends/yaml_templates/tomopy/tomopy.sim.project/project3.yaml,sha256=oyofKSMi-_dSpfjrKVMNDqoBhBCCSYbEVRz2Lsc8uTI,257
-httomo_backends-0.6.1.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-httomo_backends-0.6.1.dist-info/METADATA,sha256=JdaS98Vkzffu2CJ590WfH5H1j5nkRK74JJmh65OuA1s,2312
-httomo_backends-0.6.1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-httomo_backends-0.6.1.dist-info/top_level.txt,sha256=v4x8d4CeEyMwo8QoqIvL_p-WoXAVD1bVnASPIrLjSTg,16
-httomo_backends-0.6.1.dist-info/RECORD,,
+httomo_backends-0.6.3.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+httomo_backends-0.6.3.dist-info/METADATA,sha256=NkXRxl2hgozpRzwHrzLrPCzRmlzweZBgF1EsdngfNj0,2312
+httomo_backends-0.6.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+httomo_backends-0.6.3.dist-info/top_level.txt,sha256=v4x8d4CeEyMwo8QoqIvL_p-WoXAVD1bVnASPIrLjSTg,16
+httomo_backends-0.6.3.dist-info/RECORD,,