httomo-backends 0.5.3__py3-none-any.whl → 0.6__py3-none-any.whl

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Files changed (24) hide show
  1. httomo_backends/methods_database/packages/backends/httomolib/httomolib.yaml +8 -0
  2. httomo_backends/methods_database/packages/backends/httomolib/httomolib_modules.yaml +1 -0
  3. httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/recon/algorithm.py +42 -21
  4. httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/misc/corr.py +1 -1
  5. httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/prep/stripe.py +1 -1
  6. httomo_backends/pipelines_full/FBP3d_tomobar_denoising_directive.yaml +1 -1
  7. httomo_backends/pipelines_full/FBP3d_tomobar_directive.yaml +1 -1
  8. httomo_backends/pipelines_full/LPRec3d_tomobar_directive.yaml +1 -1
  9. httomo_backends/pipelines_full/deg360_distortion_FBP3d_tomobar_directive.yaml +1 -1
  10. httomo_backends/pipelines_full/deg360_paganin_FBP3d_tomobar_directive.yaml +1 -1
  11. httomo_backends/pipelines_full/tomopy_gridrec_directive.yaml +1 -1
  12. httomo_backends/scripts/yaml_pipelines_generator.py +1 -1
  13. httomo_backends/yaml_templates/httomolib/httomolib.misc.rescale/rescale_to_int.yaml +7 -0
  14. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.corr/remove_outlier.yaml +1 -1
  15. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/CGLS3d_tomobar.yaml +1 -0
  16. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP2d_astra.yaml +1 -0
  17. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP3d_tomobar.yaml +1 -0
  18. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/LPRec3d_tomobar.yaml +1 -0
  19. httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/SIRT3d_tomobar.yaml +1 -0
  20. {httomo_backends-0.5.3.dist-info → httomo_backends-0.6.dist-info}/METADATA +1 -1
  21. {httomo_backends-0.5.3.dist-info → httomo_backends-0.6.dist-info}/RECORD +24 -23
  22. {httomo_backends-0.5.3.dist-info → httomo_backends-0.6.dist-info}/WHEEL +0 -0
  23. {httomo_backends-0.5.3.dist-info → httomo_backends-0.6.dist-info}/licenses/LICENSE +0 -0
  24. {httomo_backends-0.5.3.dist-info → httomo_backends-0.6.dist-info}/top_level.txt +0 -0
httomo_backends/methods_database/packages/backends/httomolib/httomolib.yaml CHANGED
@@ -1,4 +1,12 @@
1
1
  misc:
2
+ rescale:
3
+ rescale_to_int:
4
+ pattern: all
5
+ output_dims_change: False
6
+ implementation: cpu
7
+ memory_gpu: None
8
+ save_result_default: False
9
+ padding: False
2
10
  morph:
3
11
  data_reducer:
4
12
  pattern: all
httomo_backends/methods_database/packages/backends/httomolib/httomolib_modules.yaml CHANGED
@@ -1,3 +1,4 @@
1
+ - httomolib.misc.rescale
1
2
  - httomolib.misc.morph
2
3
  - httomolib.misc.images
3
4
  - httomolib.misc.segm
httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/recon/algorithm.py CHANGED
@@ -77,12 +77,17 @@ def _calc_memory_bytes_FBP3d_tomobar(
77
77
  dtype: np.dtype,
78
78
  **kwargs,
79
79
  ) -> Tuple[int, int]:
80
- det_height = non_slice_dims_shape[0]
81
- det_width = non_slice_dims_shape[1]
80
+ if "detector_pad" in kwargs:
81
+ detector_pad = kwargs["detector_pad"]
82
+ else:
83
+ detector_pad = 0
84
+
85
+ angles_tot = non_slice_dims_shape[0]
86
+ det_width = non_slice_dims_shape[1] + 2 * detector_pad
82
87
  SLICES = 200 # dummy multiplier+divisor to pass large batch size threshold
83
88
 
84
89
  # 1. input
85
- input_slice_size = np.prod(non_slice_dims_shape) * dtype.itemsize
90
+ input_slice_size = (angles_tot * det_width) * dtype.itemsize
86
91
 
87
92
  ########## FFT / filter / IFFT (filtersync_cupy)
88
93
 
@@ -91,13 +96,13 @@ def _calc_memory_bytes_FBP3d_tomobar(
91
96
  cufft_estimate_1d(
92
97
  nx=det_width,
93
98
  fft_type=CufftType.CUFFT_R2C,
94
- batch=det_height * SLICES,
99
+ batch=angles_tot * SLICES,
95
100
  )
96
101
  / SLICES
97
102
  )
98
103
 
99
104
  # 3. RFFT output size (proj_f in code)
100
- proj_f_slice = det_height * (det_width // 2 + 1) * np.complex64().itemsize
105
+ proj_f_slice = angles_tot * (det_width // 2 + 1) * np.complex64().itemsize
101
106
 
102
107
  # 4. Filter size (independent of number of slices)
103
108
  filter_size = (det_width // 2 + 1) * np.float32().itemsize
@@ -107,7 +112,7 @@ def _calc_memory_bytes_FBP3d_tomobar(
107
112
  cufft_estimate_1d(
108
113
  nx=det_width,
109
114
  fft_type=CufftType.CUFFT_C2R,
110
- batch=det_height * SLICES,
115
+ batch=angles_tot * SLICES,
111
116
  )
112
117
  / SLICES
113
118
  )
@@ -123,9 +128,7 @@ def _calc_memory_bytes_FBP3d_tomobar(
123
128
 
124
129
  # 6. we swap the axes before passing data to Astra in ToMoBAR
125
130
  # https://github.com/dkazanc/ToMoBAR/blob/54137829b6326406e09f6ef9c95eb35c213838a7/tomobar/methodsDIR_CuPy.py#L135
126
- pre_astra_input_swapaxis_slice = (
127
- np.prod(non_slice_dims_shape) * np.float32().itemsize
128
- )
131
+ pre_astra_input_swapaxis_slice = (angles_tot * det_width) * np.float32().itemsize
129
132
 
130
133
  # 7. astra backprojection will generate an output array
131
134
  # https://github.com/dkazanc/ToMoBAR/blob/54137829b6326406e09f6ef9c95eb35c213838a7/tomobar/astra_wrappers/astra_base.py#L524
@@ -151,7 +154,7 @@ def _calc_memory_bytes_FBP3d_tomobar(
151
154
  # so it does not add to the memory overall
152
155
 
153
156
  # We assume for safety here that one FFT plan is not freed and one is freed
154
- tot_memory_bytes = (
157
+ tot_memory_bytes = int(
155
158
  projection_mem_size + filtersync_size - ifftplan_slice_size + recon_output_size
156
159
  )
157
160
 
@@ -166,8 +169,14 @@ def _calc_memory_bytes_LPRec3d_tomobar(
166
169
  ) -> Tuple[int, int]:
167
170
  # Based on: https://github.com/dkazanc/ToMoBAR/pull/112/commits/4704ecdc6ded3dd5ec0583c2008aa104f30a8a39
168
171
 
172
+ if "detector_pad" in kwargs:
173
+ detector_pad = kwargs["detector_pad"]
174
+ else:
175
+ detector_pad = 0
176
+
169
177
  angles_tot = non_slice_dims_shape[0]
170
- DetectorsLengthH = non_slice_dims_shape[1]
178
+ DetectorsLengthH_prepad = non_slice_dims_shape[1]
179
+ DetectorsLengthH = non_slice_dims_shape[1] + 2 * detector_pad
171
180
  SLICES = 200 # dummy multiplier+divisor to pass large batch size threshold
172
181
  _CENTER_SIZE_MIN = 192 # must be divisible by 8
173
182
 
@@ -210,7 +219,7 @@ def _calc_memory_bytes_LPRec3d_tomobar(
210
219
  if odd_horiz:
211
220
  output_dims = tuple(x + 1 for x in output_dims)
212
221
 
213
- in_slice_size = np.prod(non_slice_dims_shape) * dtype.itemsize
222
+ in_slice_size = (angles_tot * DetectorsLengthH) * dtype.itemsize
214
223
  padded_in_slice_size = angles_tot * n * np.float32().itemsize
215
224
 
216
225
  theta_size = angles_tot * np.float32().itemsize
@@ -256,7 +265,9 @@ def _calc_memory_bytes_LPRec3d_tomobar(
256
265
  center_size * center_size * (1 + angle_range_pi_count * 2) * np.int16().itemsize
257
266
  )
258
267
 
259
- recon_output_size = DetectorsLengthH * DetectorsLengthH * np.float32().itemsize
268
+ recon_output_size = (
269
+ DetectorsLengthH_prepad * DetectorsLengthH_prepad * np.float32().itemsize
270
+ )
260
271
  ifft2_plan_slice_size = (
261
272
  cufft_estimate_2d(
262
273
  nx=(2 * m + 2 * n), ny=(2 * m + 2 * n), fft_type=CufftType.CUFFT_C2C
@@ -342,24 +353,28 @@ def _calc_memory_bytes_LPRec3d_tomobar(
342
353
  add_to_memory_counters(after_recon_swapaxis_slice, True)
343
354
 
344
355
  return (tot_memory_bytes * 1.05, fixed_amount + 250 * 1024 * 1024)
345
- # return (tot_memory_bytes, fixed_amount)
346
-
347
356
 
348
357
  def _calc_memory_bytes_SIRT3d_tomobar(
349
358
  non_slice_dims_shape: Tuple[int, int],
350
359
  dtype: np.dtype,
351
360
  **kwargs,
352
361
  ) -> Tuple[int, int]:
353
- DetectorsLengthH = non_slice_dims_shape[1]
362
+
363
+ if "detector_pad" in kwargs:
364
+ detector_pad = kwargs["detector_pad"]
365
+ else:
366
+ detector_pad = 0
367
+ anglesnum = non_slice_dims_shape[0]
368
+ DetectorsLengthH = non_slice_dims_shape[1] + 2 * detector_pad
354
369
  # calculate the output shape
355
370
  output_dims = _calc_output_dim_SIRT3d_tomobar(non_slice_dims_shape, **kwargs)
356
371
 
357
- in_data_size = np.prod(non_slice_dims_shape) * dtype.itemsize
372
+ in_data_size = (anglesnum * DetectorsLengthH) * dtype.itemsize
358
373
  out_data_size = np.prod(output_dims) * dtype.itemsize
359
374
 
360
375
  astra_projection = 2.5 * (in_data_size + out_data_size)
361
376
 
362
- tot_memory_bytes = 2 * in_data_size + 2 * out_data_size + astra_projection
377
+ tot_memory_bytes = int(2 * in_data_size + 2 * out_data_size + astra_projection)
363
378
  return (tot_memory_bytes, 0)
364
379
 
365
380
 
@@ -368,14 +383,20 @@ def _calc_memory_bytes_CGLS3d_tomobar(
368
383
  dtype: np.dtype,
369
384
  **kwargs,
370
385
  ) -> Tuple[int, int]:
371
- DetectorsLengthH = non_slice_dims_shape[1]
386
+ if "detector_pad" in kwargs:
387
+ detector_pad = kwargs["detector_pad"]
388
+ else:
389
+ detector_pad = 0
390
+
391
+ anglesnum = non_slice_dims_shape[0]
392
+ DetectorsLengthH = non_slice_dims_shape[1] + 2 * detector_pad
372
393
  # calculate the output shape
373
394
  output_dims = _calc_output_dim_CGLS3d_tomobar(non_slice_dims_shape, **kwargs)
374
395
 
375
- in_data_size = np.prod(non_slice_dims_shape) * dtype.itemsize
396
+ in_data_size = (anglesnum * DetectorsLengthH) * dtype.itemsize
376
397
  out_data_size = np.prod(output_dims) * dtype.itemsize
377
398
 
378
399
  astra_projection = 2.5 * (in_data_size + out_data_size)
379
400
 
380
- tot_memory_bytes = 2 * in_data_size + 2 * out_data_size + astra_projection
401
+ tot_memory_bytes = int(2 * in_data_size + 2 * out_data_size + astra_projection)
381
402
  return (tot_memory_bytes, 0)
httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/misc/corr.py CHANGED
@@ -18,7 +18,7 @@
18
18
  # Created By : Tomography Team at DLS <scientificsoftware@diamond.ac.uk>
19
19
  # Created Date: 18/July/2024
20
20
  # ---------------------------------------------------------------------------
21
- """ Modules for memory estimation, padding, data dims estimation """
21
+ """Modules for memory estimation, padding, data dims estimation"""
22
22
 
23
23
  from typing import Tuple
24
24
 
httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/prep/stripe.py CHANGED
@@ -18,7 +18,7 @@
18
18
  # Created By : Tomography Team at DLS <scientificsoftware@diamond.ac.uk>
19
19
  # Created Date: 18/July/2024
20
20
  # ---------------------------------------------------------------------------
21
- """ Modules for memory estimation, padding, data dims estimation """
21
+ """Modules for memory estimation, padding, data dims estimation"""
22
22
 
23
23
  from typing import Tuple
24
24
 
httomo_backends/pipelines_full/FBP3d_tomobar_denoising_directive.yaml CHANGED
@@ -15,6 +15,6 @@
15
15
  - method: calculate_stats
16
16
  module_path: httomo.methods
17
17
  - method: rescale_to_int
18
- module_path: httomolibgpu.misc.rescale
18
+ module_path: httomolib.misc.rescale
19
19
  - method: save_to_images
20
20
  module_path: httomolib.misc.images
httomo_backends/pipelines_full/FBP3d_tomobar_directive.yaml CHANGED
@@ -13,6 +13,6 @@
13
13
  - method: calculate_stats
14
14
  module_path: httomo.methods
15
15
  - method: rescale_to_int
16
- module_path: httomolibgpu.misc.rescale
16
+ module_path: httomolib.misc.rescale
17
17
  - method: save_to_images
18
18
  module_path: httomolib.misc.images
httomo_backends/pipelines_full/LPRec3d_tomobar_directive.yaml CHANGED
@@ -13,7 +13,7 @@
13
13
  - method: calculate_stats
14
14
  module_path: httomo.methods
15
15
  - method: rescale_to_int
16
- module_path: httomolibgpu.misc.rescale
16
+ module_path: httomolib.misc.rescale
17
17
  - method: save_to_images
18
18
  module_path: httomolib.misc.images
19
19
 
httomo_backends/pipelines_full/deg360_distortion_FBP3d_tomobar_directive.yaml CHANGED
@@ -15,6 +15,6 @@
15
15
  - method: calculate_stats
16
16
  module_path: httomo.methods
17
17
  - method: rescale_to_int
18
- module_path: httomolibgpu.misc.rescale
18
+ module_path: httomolib.misc.rescale
19
19
  - method: save_to_images
20
20
  module_path: httomolib.misc.images
httomo_backends/pipelines_full/deg360_paganin_FBP3d_tomobar_directive.yaml CHANGED
@@ -15,6 +15,6 @@
15
15
  - method: calculate_stats
16
16
  module_path: httomo.methods
17
17
  - method: rescale_to_int
18
- module_path: httomolibgpu.misc.rescale
18
+ module_path: httomolib.misc.rescale
19
19
  - method: save_to_images
20
20
  module_path: httomolib.misc.images
httomo_backends/pipelines_full/tomopy_gridrec_directive.yaml CHANGED
@@ -13,6 +13,6 @@
13
13
  - method: calculate_stats
14
14
  module_path: httomo.methods
15
15
  - method: rescale_to_int
16
- module_path: httomolibgpu.misc.rescale
16
+ module_path: httomolib.misc.rescale
17
17
  - method: save_to_images
18
18
  module_path: httomolib.misc.images
httomo_backends/scripts/yaml_pipelines_generator.py CHANGED
@@ -158,7 +158,7 @@ def yaml_pipelines_generator(
158
158
  elif "corr" in module_name and "remove_outlier" in method_name:
159
159
  pipeline_full.yaml_set_comment_before_after_key(
160
160
  i,
161
- "--- Removing dead pixels in the data, aka zingers. Use if sharp streaks are present in reconstruction. ---",
161
+ "--- Removing dead pixels in the data, aka zingers. Use if sharp streaks are present in reconstruction. Please use before normalisation. ---",
162
162
  indent=0,
163
163
  )
164
164
  pipeline_full += yaml_template_method
httomo_backends/yaml_templates/httomolib/httomolib.misc.rescale/rescale_to_int.yaml ADDED
@@ -0,0 +1,7 @@
1
+ - method: rescale_to_int
2
+ module_path: httomolib.misc.rescale
3
+ parameters:
4
+ perc_range_min: 0.0
5
+ perc_range_max: 100.0
6
+ bits: 8
7
+ glob_stats: ${{statistics.side_outputs.glob_stats}}
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.corr/remove_outlier.yaml CHANGED
@@ -2,4 +2,4 @@
2
2
  module_path: httomolibgpu.misc.corr
3
3
  parameters:
4
4
  kernel_size: 3
5
- dif: 0.1
5
+ dif: 1000
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/CGLS3d_tomobar.yaml CHANGED
@@ -2,6 +2,7 @@
2
2
  module_path: httomolibgpu.recon.algorithm
3
3
  parameters:
4
4
  center: ${{centering.side_outputs.centre_of_rotation}}
5
+ detector_pad: 0
5
6
  recon_size: null
6
7
  iterations: 20
7
8
  nonnegativity: true
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP2d_astra.yaml CHANGED
@@ -2,6 +2,7 @@
2
2
  module_path: httomolibgpu.recon.algorithm
3
3
  parameters:
4
4
  center: ${{centering.side_outputs.centre_of_rotation}}
5
+ detector_pad: 0
5
6
  filter_type: ram-lak
6
7
  filter_parameter: null
7
8
  filter_d: null
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP3d_tomobar.yaml CHANGED
@@ -2,6 +2,7 @@
2
2
  module_path: httomolibgpu.recon.algorithm
3
3
  parameters:
4
4
  center: ${{centering.side_outputs.centre_of_rotation}}
5
+ detector_pad: 0
5
6
  filter_freq_cutoff: 0.35
6
7
  recon_size: null
7
8
  recon_mask_radius: 0.95
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/LPRec3d_tomobar.yaml CHANGED
@@ -2,6 +2,7 @@
2
2
  module_path: httomolibgpu.recon.algorithm
3
3
  parameters:
4
4
  center: ${{centering.side_outputs.centre_of_rotation}}
5
+ detector_pad: 0
5
6
  filter_type: shepp
6
7
  filter_freq_cutoff: 1.0
7
8
  recon_size: null
httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/SIRT3d_tomobar.yaml CHANGED
@@ -2,6 +2,7 @@
2
2
  module_path: httomolibgpu.recon.algorithm
3
3
  parameters:
4
4
  center: ${{centering.side_outputs.centre_of_rotation}}
5
+ detector_pad: 0
5
6
  recon_size: null
6
7
  iterations: 300
7
8
  nonnegativity: true
{httomo_backends-0.5.3.dist-info → httomo_backends-0.6.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: httomo-backends
3
- Version: 0.5.3
3
+ Version: 0.6
4
4
  Summary: Supplementary files for HTTomo backends.
5
5
  Author: Garry ODonnell, Jacob Williamson
6
6
  Author-email: Daniil Kazantsev <daniil.kazantsev@diamond.ac.uk>, Yousef Moazzam <yousef.moazzam@diamond.ac.uk>, Jessica Verschoyle <jessica.verschoyle@diamond.ac.uk>, Naman Gera <naman.gera@diamond.ac.uk>, scientificsoftware@diamond.ac.uk
{httomo_backends-0.5.3.dist-info → httomo_backends-0.6.dist-info}/RECORD RENAMED
@@ -4,8 +4,8 @@ httomo_backends/methods_database/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRk
4
4
  httomo_backends/methods_database/query.py,sha256=8jZQTmE351Me0Todn3NzyIjfZhLkzoJmagFGWAegYDw,5890
5
5
  httomo_backends/methods_database/packages/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
6
6
  httomo_backends/methods_database/packages/httomo.yaml,sha256=tI3D-7IJcdu4EbKwjsje5MVKihOr3oswHzOrxtpBYBQ,535
7
- httomo_backends/methods_database/packages/backends/httomolib/httomolib.yaml,sha256=yOfzEhZ1ZGRfJag7mSXPfBHrBlTQtVwszAyEYeDNaOM,753
8
- httomo_backends/methods_database/packages/backends/httomolib/httomolib_modules.yaml,sha256=SCUArsRf8DTwGLUn23TIPf-LCBtOBlrliTIhO-sU66U,92
7
+ httomo_backends/methods_database/packages/backends/httomolib/httomolib.yaml,sha256=8l2Z6GGlXIIe2vcX85GK4wis5zxhgmg7EmlwLMV_rtI,938
8
+ httomo_backends/methods_database/packages/backends/httomolib/httomolib_modules.yaml,sha256=tbvivxcAc90Wu36v1yFnGN-WqBIA1NHGWrg_D28UXi8,117
9
9
  httomo_backends/methods_database/packages/backends/httomolibgpu/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
10
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@@ -20,31 +20,31 @@ httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs
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- httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/recon/algorithm.py,sha256=4Q0xOFwFmLjP0mAHSTJIJlEvcqZo86xmWnahWW2Xkc8,14327
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+ httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/recon/algorithm.py,sha256=rMegPP3muruRe6ih3hNlcgSjxJ0FaNuccQHt4gtyBIo,14971
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  httomo_backends/methods_database/packages/backends/httomolibgpu/supporting_funcs/recon/peak_memory_line_profile_hook.py,sha256=hb-CyqD5TKxDg6Rg5fvFeXIO2nvjbp_XMTeRdJZ8ONo,6347
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  httomo_backends/methods_database/packages/backends/tomopy/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/misc/corr.py,sha256=Mia8EfrHhLJEIHUSSADArSFStdBnSmk4NThUs4UY2CA,1385
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+ httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/misc/corr.py,sha256=GXShVSVlZ5ZpheI3dqcONzOeHLSzR3gt79zKcsvhI1c,1383
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- httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/prep/stripe.py,sha256=kilsjGnRflVE24NMpFh4wTiUaxPjkSoxEG7Mjeo_x4s,1727
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+ httomo_backends/methods_database/packages/backends/tomopy/supporting_funcs/prep/stripe.py,sha256=SzQRDvKrWKMIyQtF4PHhtk0t6GCX3nltZSkepKQhvV8,1725
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- httomo_backends/pipelines_full/FBP3d_tomobar_denoising_directive.yaml,sha256=_ciOFf5Ae2RrQwKyygaND-0sKkYuyWYVU13KmRpKadw,647
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- httomo_backends/pipelines_full/FBP3d_tomobar_directive.yaml,sha256=i3kYosYv3kkfCnLID3jSRFPlrFOYBIanK0oiBSzlCMk,577
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+ httomo_backends/pipelines_full/FBP3d_tomobar_denoising_directive.yaml,sha256=Ycu8X7mS2n872e0ji4btPLjSTYgEhcZVPeMEeI6MPAk,644
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+ httomo_backends/pipelines_full/FBP3d_tomobar_directive.yaml,sha256=QyqyAmWZjmcgV0PjhgmZtSjytHt8BeRLncH4hkJRmcs,574
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- httomo_backends/pipelines_full/LPRec3d_tomobar_directive.yaml,sha256=IdyJjA5jxhntpe4OTDC5VoRjZPSDK7VeAv5VKdn3O-c,580
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+ httomo_backends/pipelines_full/LPRec3d_tomobar_directive.yaml,sha256=c6c-cXCstUgLVqprfMFVdxzcTCeE8H-Dnhq7kmSIhYc,577
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  httomo_backends/pipelines_full/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- httomo_backends/pipelines_full/deg360_distortion_FBP3d_tomobar_directive.yaml,sha256=E5KScGZoOZ9CotONdcK0Tkffk04eVD4so-UqD1G0cAw,679
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- httomo_backends/pipelines_full/deg360_paganin_FBP3d_tomobar_directive.yaml,sha256=3UwUJBWbLUlX3rG-Zb0gjAmVMpWCWCUUUQxW6B9wdyo,663
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+ httomo_backends/pipelines_full/deg360_distortion_FBP3d_tomobar_directive.yaml,sha256=7tHclsalkymiUGXRrbXSeDjJgVmw_H-bWFj6LC34he0,676
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+ httomo_backends/pipelines_full/deg360_paganin_FBP3d_tomobar_directive.yaml,sha256=43ugLxzkqnRsL4UJSZWErjfgwvpEfLP2QSwtQQLh6RQ,660
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  httomo_backends/pipelines_full/sweep_center_FBP3d_tomobar_directive.yaml,sha256=ERai5NvyAQz9-1EAdMUw3XkjlMvZhh6LCtXQpRh7mv4,277
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- httomo_backends/pipelines_full/tomopy_gridrec_directive.yaml,sha256=jYXN8rVphKfwLeduQKe43ZRKjifuD4qy2YrcG3QOBWI,536
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+ httomo_backends/pipelines_full/tomopy_gridrec_directive.yaml,sha256=NlrX-mqyzjJvwGotTLwosBnC4d9pPRNB1JWFA7YXHuM,533
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  httomo_backends/scripts/json_pipelines_generator.py,sha256=iWTsYr1i0Ei77Imaml5HXWvZUUeX-tkU1WRIdxskV3M,8322
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- httomo_backends/scripts/yaml_pipelines_generator.py,sha256=60kvndHHfQN0XV_JSVmDGIaSemSkXVgNE6nUxnYjDSw,14137
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+ httomo_backends/scripts/yaml_pipelines_generator.py,sha256=OjrE6zMhdnta87Odwp3vOiW6OcoUSkkYjxyHvz3h_V4,14170
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  httomo_backends/scripts/yaml_templates_generator.py,sha256=NjE5q8YXxkXjA-9WTg4YB8ccawNA0veeJE1C8yyWqlI,8532
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  httomo_backends/scripts/yaml_unsupported_tomopy_remove.py,sha256=R3ZAfFgpVsBWS7zBjLlU83-66nawo7EBegFsIAHBWmQ,3715
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  httomo_backends/yaml_templates/httomo/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -54,11 +54,12 @@ httomo_backends/yaml_templates/httomo/httomo.methods/save_intermediate_data.yaml
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  httomo_backends/yaml_templates/httomolib/httomolib.misc.images/save_to_images.yaml,sha256=8cDkqRtuyNBYLTs0b3Kgv7Y4neV-0EBTuNoXin4y4b4,162
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  httomo_backends/yaml_templates/httomolib/httomolib.misc.morph/data_reducer.yaml,sha256=RYCat3aMz6fr57Y2zeHVVJwXQDrU-ihV2eqV9MyBOPk,105
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+ httomo_backends/yaml_templates/httomolib/httomolib.misc.rescale/rescale_to_int.yaml,sha256=UoMe5tiq531UyE0NOCTcu1MRLDq74sokHSHaK-r7Dog,195
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  httomo_backends/yaml_templates/httomolib/httomolib.prep.phase/paganin_filter.yaml,sha256=Y02ifIbl9SS_qtqT_G7SA40MAmKeAYJ9fHSAP21_ECc,147
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- httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.corr/remove_outlier.yaml,sha256=IqU94XAVEdFcBas3HA8E2MJGWK-dMK8AaNDBNGK8vHU,109
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.misc.corr/remove_outlier.yaml,sha256=k3y2Iwuv401EHdQZWIUreGAyEFoWasu7-0i7ibxRrhQ,110
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@@ -72,11 +73,11 @@ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.prep.stripe/raven_filte
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- httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/CGLS3d_tomobar.yaml,sha256=Vd3dcAj8wifxCgljjXsfGVDd6tB1YhkWNV7SZ4s29Ag,224
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- httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP2d_astra.yaml,sha256=2q1DLWNnqIw1KmSgQrYXcrPQNvDkzdGg0DuRTTncrWI,277
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- httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP3d_tomobar.yaml,sha256=z4RMuiXScK3Hj6uSM0dGTTUJyDnWtKyNxZ6JYbFMOic,237
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- httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/LPRec3d_tomobar.yaml,sha256=Ms5Pg_rQlseH5Vo8G7bPCCfzzaoXcOFG6ZHYftiSl1w,261
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- httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/SIRT3d_tomobar.yaml,sha256=Z_8qdcwNrrCCv7TOceaYjqNCJWbWZunKXrXrxs0s48Y,225
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/CGLS3d_tomobar.yaml,sha256=q6qCBdZHAkzVTvilkjhWATV88neFjzjUu9Kvcs2VrkM,244
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP2d_astra.yaml,sha256=Nf2Gh0XewTK4PRwctIPU7KtAdnbd3YWGWHgJMQLLhhs,297
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/FBP3d_tomobar.yaml,sha256=PuJf07CK3wdoACwwRoI769oD0BLXJSVXXbkW9ABMm58,257
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/LPRec3d_tomobar.yaml,sha256=CgJxNqpeTLWG6DvQXTgkqzmX2wZaJCCG9_aJ-o_AAIs,281
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+ httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/SIRT3d_tomobar.yaml,sha256=MI3XHxpgKz-dQ3n0Zjfr9ir0hgh-7Uruke3iovgvGuc,245
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  httomo_backends/yaml_templates/httomolibgpu/httomolibgpu.recon.rotation/find_center_vo.yaml,sha256=CmJ_0a73jX7MmOxQIvQrrKg_2HEtK0MXNVXLrfR3caU,296
@@ -140,8 +141,8 @@ httomo_backends/yaml_templates/tomopy/tomopy.sim.project/add_zingers.yaml,sha256
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  httomo_backends/yaml_templates/tomopy/tomopy.sim.project/project3.yaml,sha256=oyofKSMi-_dSpfjrKVMNDqoBhBCCSYbEVRz2Lsc8uTI,257
143
- httomo_backends-0.5.3.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
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- httomo_backends-0.5.3.dist-info/METADATA,sha256=lxol6iGK9M58i1qHAgInXqS0huYFr1p9mLK6I_P3NZ0,2312
145
- httomo_backends-0.5.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
146
- httomo_backends-0.5.3.dist-info/top_level.txt,sha256=v4x8d4CeEyMwo8QoqIvL_p-WoXAVD1bVnASPIrLjSTg,16
147
- httomo_backends-0.5.3.dist-info/RECORD,,
144
+ httomo_backends-0.6.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
145
+ httomo_backends-0.6.dist-info/METADATA,sha256=l2D7BiEs5l475GAEgXAsUYY6N3VVGUswQjqJ-BGQXAE,2310
146
+ httomo_backends-0.6.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
147
+ httomo_backends-0.6.dist-info/top_level.txt,sha256=v4x8d4CeEyMwo8QoqIvL_p-WoXAVD1bVnASPIrLjSTg,16
148
+ httomo_backends-0.6.dist-info/RECORD,,