hpcflow-new2 0.2.0a211__py3-none-any.whl → 0.2.0a213__py3-none-any.whl

hpcflow/sdk/core/task.py

@@ -629,12 +629,10 @@ class ElementSet(JSONLike):
         return [it.id_ for it in self.element_iterations]
 
     @overload
-    def get_task_dependencies(self, as_objects: Literal[False] = False) -> set[int]:
-        ...
+    def get_task_dependencies(self, as_objects: Literal[False] = False) -> set[int]: ...
 
     @overload
-    def get_task_dependencies(self, as_objects: Literal[True]) -> list[WorkflowTask]:
-        ...
+    def get_task_dependencies(self, as_objects: Literal[True]) -> list[WorkflowTask]: ...
 
     def get_task_dependencies(
         self, as_objects: bool = False
@@ -2583,8 +2581,7 @@ class WorkflowTask(AppAware):
             | None
         ) = None,
         return_indices: Literal[True],
-    ) -> list[int]:
-        ...
+    ) -> list[int]: ...
 
     @overload
     def add_elements(
@@ -2606,8 +2603,7 @@ class WorkflowTask(AppAware):
             | None
         ) = None,
         return_indices: Literal[False] = False,
-    ) -> None:
-        ...
+    ) -> None: ...
 
     def add_elements(
         self,
@@ -2763,15 +2759,13 @@ class WorkflowTask(AppAware):
     def get_element_dependencies(
         self,
         as_objects: Literal[False] = False,
-    ) -> set[int]:
-        ...
+    ) -> set[int]: ...
 
     @overload
     def get_element_dependencies(
         self,
         as_objects: Literal[True],
-    ) -> list[Element]:
-        ...
+    ) -> list[Element]: ...
 
     def get_element_dependencies(
         self,
@@ -2793,12 +2787,10 @@ class WorkflowTask(AppAware):
         return deps
 
     @overload
-    def get_task_dependencies(self, as_objects: Literal[False] = False) -> set[int]:
-        ...
+    def get_task_dependencies(self, as_objects: Literal[False] = False) -> set[int]: ...
 
     @overload
-    def get_task_dependencies(self, as_objects: Literal[True]) -> list[WorkflowTask]:
-        ...
+    def get_task_dependencies(self, as_objects: Literal[True]) -> list[WorkflowTask]: ...
 
     def get_task_dependencies(
         self,
@@ -2833,12 +2825,10 @@ class WorkflowTask(AppAware):
     def get_dependent_elements(
         self,
         as_objects: Literal[False] = False,
-    ) -> set[int]:
-        ...
+    ) -> set[int]: ...
 
     @overload
-    def get_dependent_elements(self, as_objects: Literal[True]) -> list[Element]:
-        ...
+    def get_dependent_elements(self, as_objects: Literal[True]) -> list[Element]: ...
 
     def get_dependent_elements(
         self,
@@ -2861,12 +2851,10 @@ class WorkflowTask(AppAware):
         return deps
 
     @overload
-    def get_dependent_tasks(self, as_objects: Literal[False] = False) -> set[int]:
-        ...
+    def get_dependent_tasks(self, as_objects: Literal[False] = False) -> set[int]: ...
 
     @overload
-    def get_dependent_tasks(self, as_objects: Literal[True]) -> list[WorkflowTask]:
-        ...
+    def get_dependent_tasks(self, as_objects: Literal[True]) -> list[WorkflowTask]: ...
 
     @TimeIt.decorator
     def get_dependent_tasks(
@@ -3436,15 +3424,13 @@ class Elements:
     def __getitem__(
         self,
         selection: int,
-    ) -> Element:
-        ...
+    ) -> Element: ...
 
     @overload
     def __getitem__(
         self,
         selection: slice | list[int],
-    ) -> list[Element]:
-        ...
+    ) -> list[Element]: ...
 
     @TimeIt.decorator
     def __getitem__(
@@ -3519,12 +3505,12 @@ class Parameters(AppAware):
         yield from self.__getitem__(slice(None))
 
     @overload
-    def __getitem__(self, selection: int) -> Any | ElementParameter:
-        ...
+    def __getitem__(self, selection: int) -> Any | ElementParameter: ...
 
     @overload
-    def __getitem__(self, selection: slice | list[int]) -> list[Any | ElementParameter]:
-        ...
+    def __getitem__(
+        self, selection: slice | list[int]
+    ) -> list[Any | ElementParameter]: ...
 
     def __getitem__(
         self,

hpcflow/sdk/core/task_schema.py

@@ -408,7 +408,7 @@ class TaskSchema(JSONLike):
             return type_fmt
 
         def _prepare_script_data_format_table(
-            script_data_grouped: Mapping[str, Mapping[str, Mapping[str, str]]]
+            script_data_grouped: Mapping[str, Mapping[str, Mapping[str, str]]],
         ) -> str:
             out = ""
             rows = ""

hpcflow/sdk/core/types.py

@@ -422,8 +422,7 @@ class ResourcePersistingWorkflow(Protocol):
     persisting resources.
     """
 
-    def _add_parameter_data(self, data: Any, source: ParamSource) -> int:
-        ...
+    def _add_parameter_data(self, data: Any, source: ParamSource) -> int: ...
 
     def check_parameters_exist(self, id_lst: int | list[int]) -> bool:
         """

hpcflow/sdk/core/utils.py

@@ -132,13 +132,11 @@ def check_valid_py_identifier(name: str) -> str:
 @overload
 def group_by_dict_key_values(  # type: ignore[overload-overlap]
     lst: list[dict[T, T2]], key: T
-) -> list[list[dict[T, T2]]]:
-    ...
+) -> list[list[dict[T, T2]]]: ...
 
 
 @overload
-def group_by_dict_key_values(lst: list[TD], key: str) -> list[list[TD]]:
-    ...
+def group_by_dict_key_values(lst: list[TD], key: str) -> list[list[TD]]: ...
 
 
 def group_by_dict_key_values(lst: list, key):
@@ -763,22 +761,19 @@ def reshape(lst: Sequence[T], lens: Sequence[Sequence[int]]) -> list[TList[T]]:
 @overload
 def remap(
     lst: list[int], mapping_func: Callable[[Sequence[int]], Sequence[T]]
-) -> list[T]:
-    ...
+) -> list[T]: ...
 
 
 @overload
 def remap(
     lst: list[list[int]], mapping_func: Callable[[Sequence[int]], Sequence[T]]
-) -> list[list[T]]:
-    ...
+) -> list[list[T]]: ...
 
 
 @overload
 def remap(
     lst: list[list[list[int]]], mapping_func: Callable[[Sequence[int]], Sequence[T]]
-) -> list[list[list[T]]]:
-    ...
+) -> list[list[list[T]]]: ...
 
 
 def remap(lst, mapping_func):
@@ -890,13 +885,11 @@ def open_file(filename: str | Path):
 
 
 @overload
-def get_enum_by_name_or_val(enum_cls: type[E], key: None) -> None:
-    ...
+def get_enum_by_name_or_val(enum_cls: type[E], key: None) -> None: ...
 
 
 @overload
-def get_enum_by_name_or_val(enum_cls: type[E], key: str | int | float | E) -> E:
-    ...
+def get_enum_by_name_or_val(enum_cls: type[E], key: str | int | float | E) -> E: ...
 
 
 def get_enum_by_name_or_val(
@@ -1028,9 +1021,9 @@ def dict_values_process_flat(
 
     """
     flat: list[T2] = []  # values of `d`, flattened
-    is_multi: list[
-        tuple[bool, int]
-    ] = []  # whether a list, and the number of items to process
+    is_multi: list[tuple[bool, int]] = (
+        []
+    )  # whether a list, and the number of items to process
     for i in d.values():
         if isinstance(i, list):
             flat.extend(cast("list[T2]", i))

hpcflow/sdk/core/validation.py

@@ -17,11 +17,9 @@ class ValidatedData(Protocol, Generic[T]):
     """
 
     @property
-    def is_valid(self) -> bool:
-        ...
+    def is_valid(self) -> bool: ...
 
-    def get_failures_string(self) -> str:
-        ...
+    def get_failures_string(self) -> str: ...
 
     cast_data: T
 
@@ -32,12 +30,10 @@ class PreparedConditionCallable(Protocol):
     """
 
     @property
-    def name(self) -> str:
-        ...
+    def name(self) -> str: ...
 
     @property
-    def args(self) -> tuple[str, ...]:
-        ...
+    def args(self) -> tuple[str, ...]: ...
 
 
 class Condition(Protocol):
@@ -46,8 +42,7 @@ class Condition(Protocol):
     """
 
     @property
-    def callable(self) -> PreparedConditionCallable:
-        ...
+    def callable(self) -> PreparedConditionCallable: ...
 
 
 class Rule(Protocol):
@@ -56,12 +51,10 @@ class Rule(Protocol):
     """
 
     @property
-    def condition(self) -> Condition:
-        ...
+    def condition(self) -> Condition: ...
 
     @property
-    def path(self) -> object:
-        ...
+    def path(self) -> object: ...
 
 
 class Schema(Protocol):
@@ -69,18 +62,14 @@ class Schema(Protocol):
     Typed profile of ``valida.Schema``.
     """
 
-    def validate(self, data: T) -> ValidatedData[T]:
-        ...
+    def validate(self, data: T) -> ValidatedData[T]: ...
 
     @property
-    def rules(self) -> Sequence[Rule]:
-        ...
+    def rules(self) -> Sequence[Rule]: ...
 
-    def add_schema(self, schema: Schema, root_path: Any = None) -> None:
-        ...
+    def add_schema(self, schema: Schema, root_path: Any = None) -> None: ...
 
-    def to_tree(self, **kwargs) -> Sequence[Mapping[str, str]]:
-        ...
+    def to_tree(self, **kwargs) -> Sequence[Mapping[str, str]]: ...
 
 
 def get_schema(filename) -> Schema:

hpcflow/sdk/core/workflow.py

@@ -886,7 +886,7 @@ class Workflow(AppAware):
         if self._store.fs:
             if self._store.fs.protocol == "zip":
                 return self._store.fs.of.path
-            elif self._store.fs.protocol == "file":
+            elif self._store.fs.protocol == ("file", "local"):
                 return self.path
         raise NotImplementedError("Only (local) zip and local URLs provided for now.")
 
@@ -1840,12 +1840,10 @@ class Workflow(AppAware):
         task: int
 
     @overload
-    def get_EARs_from_IDs(self, ids: Iterable[int]) -> list[ElementActionRun]:
-        ...
+    def get_EARs_from_IDs(self, ids: Iterable[int]) -> list[ElementActionRun]: ...
 
     @overload
-    def get_EARs_from_IDs(self, ids: int) -> ElementActionRun:
-        ...
+    def get_EARs_from_IDs(self, ids: int) -> ElementActionRun: ...
 
     @TimeIt.decorator
     def get_EARs_from_IDs(
@@ -2393,12 +2391,12 @@ class Workflow(AppAware):
     @overload
     def get_task_unique_names(
         self, map_to_insert_ID: Literal[False] = False
-    ) -> Sequence[str]:
-        ...
+    ) -> Sequence[str]: ...
 
     @overload
-    def get_task_unique_names(self, map_to_insert_ID: Literal[True]) -> Mapping[str, int]:
-        ...
+    def get_task_unique_names(
+        self, map_to_insert_ID: Literal[True]
+    ) -> Mapping[str, int]: ...
 
     def get_task_unique_names(
         self, map_to_insert_ID: bool = False
@@ -3072,28 +3070,24 @@ class Workflow(AppAware):
         *,
         ret_iter_IDs: Literal[False] = False,
         ret_data_idx: Literal[False] = False,
-    ) -> Sequence[tuple[int, LoopIndex[str, int]]]:
-        ...
+    ) -> Sequence[tuple[int, LoopIndex[str, int]]]: ...
 
     @overload
     def get_iteration_task_pathway(
         self, *, ret_iter_IDs: Literal[False] = False, ret_data_idx: Literal[True]
-    ) -> Sequence[tuple[int, LoopIndex[str, int], tuple[Mapping[str, int], ...]]]:
-        ...
+    ) -> Sequence[tuple[int, LoopIndex[str, int], tuple[Mapping[str, int], ...]]]: ...
 
     @overload
     def get_iteration_task_pathway(
         self, *, ret_iter_IDs: Literal[True], ret_data_idx: Literal[False] = False
-    ) -> Sequence[tuple[int, LoopIndex[str, int], tuple[int, ...]]]:
-        ...
+    ) -> Sequence[tuple[int, LoopIndex[str, int], tuple[int, ...]]]: ...
 
     @overload
     def get_iteration_task_pathway(
         self, *, ret_iter_IDs: Literal[True], ret_data_idx: Literal[True]
     ) -> Sequence[
         tuple[int, LoopIndex[str, int], tuple[int, ...], tuple[Mapping[str, int], ...]]
-    ]:
-        ...
+    ]: ...
 
     @TimeIt.decorator
     def get_iteration_task_pathway(
@@ -3242,8 +3236,7 @@ class Workflow(AppAware):
         tasks: list[int] | None = None,
         cancel: bool = False,
         status: bool = True,
-    ) -> Mapping[int, Sequence[int]]:
-        ...
+    ) -> Mapping[int, Sequence[int]]: ...
 
     @overload
     def submit(
@@ -3258,8 +3251,7 @@ class Workflow(AppAware):
         tasks: list[int] | None = None,
         cancel: bool = False,
         status: bool = True,
-    ) -> None:
-        ...
+    ) -> None: ...
 
     def submit(
         self,
@@ -4339,9 +4331,9 @@ class Workflow(AppAware):
         # a fill value means no sub directory should be created
         T_FILL, E_FILL, I_FILL, A_FILL, R_FILL, _, _ = RUN_DIR_ARR_FILL
 
-        depth_idx_cache: dict[
-            tuple[int, int], NDArray
-        ] = {}  # keys are (max_avail, tot_elems_per_dir_level)
+        depth_idx_cache: dict[tuple[int, int], NDArray] = (
+            {}
+        )  # keys are (max_avail, tot_elems_per_dir_level)
 
         # format run directories:
         dirs = []