hpcflow-new2 0.2.0a211__py3-none-any.whl → 0.2.0a212__py3-none-any.whl

hpcflow/_version.py

@@ -1 +1 @@
-__version__ = "0.2.0a211"
+__version__ = "0.2.0a212"

hpcflow/sdk/app.py

@@ -178,8 +178,7 @@ if TYPE_CHECKING:
             variables: dict[str, str] | None = None,
             status: bool = True,
             add_submission: bool = False,
-        ) -> _Workflow | _Submission | None:
-            ...
+        ) -> _Workflow | _Submission | None: ...
 
     class _MakeDemoWorkflow(Protocol):
         """Type of :py:meth:`BaseApp.make_demo_workflow`"""
@@ -198,8 +197,7 @@ if TYPE_CHECKING:
             variables: dict[str, str] | None = None,
             status: bool = True,
             add_submission: bool = False,
-        ) -> _Workflow | _Submission | None:
-            ...
+        ) -> _Workflow | _Submission | None: ...
 
     class _MakeAndSubmitWorkflow(Protocol):
         """Type of :py:meth:`BaseApp.make_and_submit_workflow`"""
@@ -225,8 +223,7 @@ if TYPE_CHECKING:
             tasks: list[int] | None = None,
             cancel: bool = False,
             status: bool = True,
-        ) -> tuple[_Workflow, Mapping[int, Sequence[int]]] | _Workflow:
-            ...
+        ) -> tuple[_Workflow, Mapping[int, Sequence[int]]] | _Workflow: ...
 
     class _MakeAndSubmitDemoWorkflow(Protocol):
         """Type of :py:meth:`BaseApp.make_and_submit_demo_workflow`"""
@@ -251,8 +248,7 @@ if TYPE_CHECKING:
             tasks: list[int] | None = None,
             cancel: bool = False,
             status: bool = True,
-        ) -> tuple[_Workflow, Mapping[int, Sequence[int]]] | _Workflow:
-            ...
+        ) -> tuple[_Workflow, Mapping[int, Sequence[int]]] | _Workflow: ...
 
     class _SubmitWorkflow(Protocol):
         """Type of :py:meth:`BaseApp.submit_workflow`"""
@@ -265,8 +261,7 @@ if TYPE_CHECKING:
             wait: bool = False,
             return_idx: bool = False,
             tasks: list[int] | None = None,
-        ) -> Mapping[int, Sequence[int]] | None:
-            ...
+        ) -> Mapping[int, Sequence[int]] | None: ...
 
     class _GetKnownSubmissions(Protocol):
         """Type of :py:meth:`BaseApp.get_known_submissions`"""
@@ -278,8 +273,7 @@ if TYPE_CHECKING:
             no_update: bool = False,
             as_json: bool = False,
             status: Status | None = None,
-        ) -> Sequence[KnownSubmissionItem]:
-            ...
+        ) -> Sequence[KnownSubmissionItem]: ...
 
     class _Show(Protocol):
         """Type of :py:meth:`BaseApp.show`"""
@@ -289,8 +283,7 @@ if TYPE_CHECKING:
             max_recent: int = 3,
             full: bool = False,
             no_update: bool = False,
-        ) -> None:
-            ...
+        ) -> None: ...
 
     class _Cancel(Protocol):
         """Type of :py:meth:`BaseApp.cancel`"""
@@ -300,14 +293,12 @@ if TYPE_CHECKING:
             workflow_ref: int | str | Path,
             ref_is_path: str | None = None,
             status: bool = False,
-        ) -> None:
-            ...
+        ) -> None: ...
 
     class _RunTests(Protocol):
         """Type of :py:meth:`BaseApp.run_tests and run_hpcflow_tests`"""
 
-        def __call__(self, *args: str) -> int:
-            ...
+        def __call__(self, *args: str) -> int: ...
 
 
 SDK_logger = get_SDK_logger(__name__)
@@ -558,9 +549,9 @@ class BaseApp(metaclass=Singleton):
         self._config: Config | None = (
             None  # assigned on first access to `config` property
         )
-        self._config_files: dict[
-            str, ConfigFile
-        ] = {}  # assigned on config load, keys are string absolute paths
+        self._config_files: dict[str, ConfigFile] = (
+            {}
+        )  # assigned on config load, keys are string absolute paths
 
         # Set by `_load_template_components`:
         self._template_components: TemplateComponents = {}
@@ -2588,9 +2579,9 @@ class BaseApp(metaclass=Singleton):
         # date-times:
         line_date: dict[int, str] = {}
 
-        removed_IDs: list[
-            int
-        ] = []  # which submissions we completely remove from the file
+        removed_IDs: list[int] = (
+            []
+        )  # which submissions we completely remove from the file
 
         new_lines: list[str] = []
         line_IDs: list[int] = []

hpcflow/sdk/config/callbacks.py

@@ -33,13 +33,11 @@ def callback_vars(config: Config, value) -> str:
 
 
 @overload
-def callback_file_paths(config: Config, file_path: PathLike) -> PathLike:
-    ...
+def callback_file_paths(config: Config, file_path: PathLike) -> PathLike: ...
 
 
 @overload
-def callback_file_paths(config: Config, file_path: list[PathLike]) -> list[PathLike]:
-    ...
+def callback_file_paths(config: Config, file_path: list[PathLike]) -> list[PathLike]: ...
 
 
 def callback_file_paths(config: Config, file_path: PathLike | list[PathLike]):
@@ -67,18 +65,15 @@ def callback_bool(config: Config, value: str | bool) -> bool:
 
 
 @overload
-def callback_lowercase(config: Config, value: list[str]) -> list[str]:
-    ...
+def callback_lowercase(config: Config, value: list[str]) -> list[str]: ...
 
 
 @overload
-def callback_lowercase(config: Config, value: dict[str, T]) -> dict[str, T]:
-    ...
+def callback_lowercase(config: Config, value: dict[str, T]) -> dict[str, T]: ...
 
 
 @overload
-def callback_lowercase(config: Config, value: str) -> str:
-    ...
+def callback_lowercase(config: Config, value: str) -> str: ...
 
 
 def callback_lowercase(

hpcflow/sdk/config/config.py

@@ -541,9 +541,7 @@ class Config:
         else:
             super().__setattr__(name, value)
 
-    def _disable_callbacks(
-        self, callbacks: Sequence[str]
-    ) -> tuple[
+    def _disable_callbacks(self, callbacks: Sequence[str]) -> tuple[
         dict[str, tuple[GetterCallback, ...]],
         dict[str, tuple[SetterCallback, ...]],
         dict[str, tuple[UnsetterCallback, ...]],
@@ -661,14 +659,12 @@ class Config:
     @overload
     def get_all(
         self, *, include_overrides: bool = True, as_str: Literal[True]
-    ) -> Mapping[str, str]:
-        ...
+    ) -> Mapping[str, str]: ...
 
     @overload
     def get_all(
         self, *, include_overrides: bool = True, as_str: Literal[False] = False
-    ) -> Mapping[str, Any]:
-        ...
+    ) -> Mapping[str, Any]: ...
 
     def get_all(
         self, *, include_overrides: bool = True, as_str: bool = False
@@ -740,8 +736,7 @@ class Config:
         as_str: Literal[False] = False,
         callback=True,
         default_value=None,
-    ) -> Any:
-        ...
+    ) -> Any: ...
 
     @overload
     def _get(
@@ -753,8 +748,7 @@ class Config:
         as_str: Literal[True],
         callback=True,
         default_value=None,
-    ) -> list[str] | str:
-        ...
+    ) -> list[str] | str: ...
 
     def _get(
         self,
@@ -829,8 +823,7 @@ class Config:
     @overload
     def _set(
         self, name: str, value: str, *, is_json: Literal[True], callback=True, quiet=False
-    ) -> None:
-        ...
+    ) -> None: ...
 
     @overload
     def _set(
@@ -841,8 +834,7 @@ class Config:
         is_json: Literal[False] = False,
         callback=True,
         quiet=False,
-    ) -> None:
-        ...
+    ) -> None: ...
 
     def _set(
         self, name: str, value, *, is_json=False, callback=True, quiet=False
@@ -918,14 +910,12 @@ class Config:
         *,
         is_json: Literal[False] = False,
         quiet: bool = False,
-    ) -> None:
-        ...
+    ) -> None: ...
 
     @overload
     def set(
         self, path: str, value: str, *, is_json: Literal[True], quiet: bool = False
-    ) -> None:
-        ...
+    ) -> None: ...
 
     def set(
         self, path: str, value: Any, *, is_json: bool = False, quiet: bool = False
@@ -1003,8 +993,7 @@ class Config:
         copy: bool = False,
         ret_root_and_parts: Literal[False] = False,
         default: Any | None = None,
-    ) -> Any:
-        ...
+    ) -> Any: ...
 
     @overload
     def get(
@@ -1015,8 +1004,7 @@ class Config:
         copy: bool = False,
         ret_root_and_parts: Literal[True],
         default: Any | None = None,
-    ) -> tuple[Any, Any, list[str]]:
-        ...
+    ) -> tuple[Any, Any, list[str]]: ...
 
     def get(
         self,

hpcflow/sdk/core/actions.py

@@ -464,8 +464,7 @@ class ElementActionRun(AppAware):
         typ: str | None = None,
         as_strings: Literal[False] = False,
         use_task_index: bool = False,
-    ) -> Mapping[str, ParamSource | list[ParamSource]]:
-        ...
+    ) -> Mapping[str, ParamSource | list[ParamSource]]: ...
 
     @overload
     def get_parameter_sources(
@@ -475,8 +474,7 @@ class ElementActionRun(AppAware):
         typ: str | None = None,
         as_strings: Literal[True],
         use_task_index: bool = False,
-    ) -> Mapping[str, str]:
-        ...
+    ) -> Mapping[str, str]: ...
 
     @TimeIt.decorator
     def get_parameter_sources(
@@ -552,12 +550,12 @@ class ElementActionRun(AppAware):
         )
 
     @overload
-    def get_EAR_dependencies(self, as_objects: Literal[False] = False) -> set[int]:
-        ...
+    def get_EAR_dependencies(self, as_objects: Literal[False] = False) -> set[int]: ...
 
     @overload
-    def get_EAR_dependencies(self, as_objects: Literal[True]) -> list[ElementActionRun]:
-        ...
+    def get_EAR_dependencies(
+        self, as_objects: Literal[True]
+    ) -> list[ElementActionRun]: ...
 
     @TimeIt.decorator
     def get_EAR_dependencies(self, as_objects=False) -> list[ElementActionRun] | set[int]:
@@ -592,12 +590,10 @@ class ElementActionRun(AppAware):
         }
 
     @overload
-    def get_dependent_EARs(self, as_objects: Literal[False] = False) -> set[int]:
-        ...
+    def get_dependent_EARs(self, as_objects: Literal[False] = False) -> set[int]: ...
 
     @overload
-    def get_dependent_EARs(self, as_objects: Literal[True]) -> list[ElementActionRun]:
-        ...
+    def get_dependent_EARs(self, as_objects: Literal[True]) -> list[ElementActionRun]: ...
 
     def get_dependent_EARs(
         self, as_objects: bool = False
@@ -865,9 +861,9 @@ class ElementActionRun(AppAware):
                 "Cannot get output file parser inputs from this from EAR because the "
                 "associated action is not expanded, meaning multiple OFPs might exist."
             )
-        inputs: dict[
-            str, str | list[str] | Mapping[str, Any]
-        ] = {}  # not sure this type is correct
+        inputs: dict[str, str | list[str] | Mapping[str, Any]] = (
+            {}
+        )  # not sure this type is correct
         for inp_typ in self.action.output_file_parsers[0].inputs or []:
             inputs[inp_typ] = self.get(f"inputs.{inp_typ}", raise_on_unset=raise_on_unset)
 
@@ -1130,8 +1126,7 @@ class ElementActionRun(AppAware):
         jobscript: Jobscript,
         environments: EnvironmentsList,
         raise_on_unset: Literal[True],
-    ) -> Path:
-        ...
+    ) -> Path: ...
 
     @overload
     def try_write_commands(
@@ -1139,8 +1134,7 @@ class ElementActionRun(AppAware):
         jobscript: Jobscript,
         environments: EnvironmentsList,
         raise_on_unset: Literal[False] = False,
-    ) -> Path | None:
-        ...
+    ) -> Path | None: ...
 
     def try_write_commands(
         self,
@@ -1395,8 +1389,7 @@ class ElementAction(AppAware):
         typ: str | None = None,
         as_strings: Literal[False] = False,
         use_task_index: bool = False,
-    ) -> Mapping[str, ParamSource | list[ParamSource]]:
-        ...
+    ) -> Mapping[str, ParamSource | list[ParamSource]]: ...
 
     @overload
     def get_parameter_sources(
@@ -1407,8 +1400,7 @@ class ElementAction(AppAware):
         typ: str | None = None,
         as_strings: Literal[True],
         use_task_index: bool = False,
-    ) -> Mapping[str, str]:
-        ...
+    ) -> Mapping[str, str]: ...
 
     def get_parameter_sources(
         self,
@@ -2124,9 +2116,9 @@ class Action(JSONLike):
             for ifg in self.input_file_generators
         }
         OFPs = {
-            ofp.output.typ
-            if ofp.output
-            else f"OFP_{idx}": [out_file.label for out_file in ofp.output_files]
+            ofp.output.typ if ofp.output else f"OFP_{idx}": [
+                out_file.label for out_file in ofp.output_files
+            ]
             for idx, ofp in enumerate(self.output_file_parsers)
         }
 
@@ -2341,8 +2333,7 @@ class Action(JSONLike):
         ret_specifiers: Literal[False] = False,
         include_suffix: bool = True,
         specs_suffix_delim: str = ".",
-    ) -> tuple[str, Path]:
-        ...
+    ) -> tuple[str, Path]: ...
 
     @overload
     def get_script_artifact_name(
@@ -2352,8 +2343,7 @@ class Action(JSONLike):
         ret_specifiers: Literal[True],
         include_suffix: bool = True,
         specs_suffix_delim: str = ".",
-    ) -> tuple[str, Path, dict]:
-        ...
+    ) -> tuple[str, Path, dict]: ...
 
     def get_script_artifact_name(
         self,
@@ -2399,8 +2389,7 @@ class Action(JSONLike):
         script: str,
         env_spec: Mapping[str, Any] | None = None,
         ret_specifiers: Literal[False] = False,
-    ) -> str:
-        ...
+    ) -> str: ...
 
     @overload
     @classmethod
@@ -2410,8 +2399,7 @@ class Action(JSONLike):
         env_spec: Mapping[str, Any] | None = None,
         *,
         ret_specifiers: Literal[True],
-    ) -> tuple[str, dict[str, Any]]:
-        ...
+    ) -> tuple[str, dict[str, Any]]: ...
 
     @overload
     @classmethod
@@ -2421,8 +2409,7 @@ class Action(JSONLike):
         env_spec: Mapping[str, Any] | None = None,
         *,
         ret_specifiers: bool,
-    ) -> str | tuple[str, dict[str, Any]]:
-        ...
+    ) -> str | tuple[str, dict[str, Any]]: ...
 
     @classmethod
     def get_snippet_script_str(
@@ -2474,8 +2461,7 @@ class Action(JSONLike):
         env_spec: Mapping[str, Any] | None = None,
         *,
         ret_specifiers: Literal[True],
-    ) -> tuple[Path, dict[str, Any]] | None:
-        ...
+    ) -> tuple[Path, dict[str, Any]] | None: ...
 
     @classmethod
     @overload
@@ -2485,8 +2471,7 @@ class Action(JSONLike):
         env_spec: Mapping[str, Any] | None = None,
         *,
         ret_specifiers: Literal[False] = False,
-    ) -> Path | None:
-        ...
+    ) -> Path | None: ...
 
     @classmethod
     def get_snippet_script_path(

hpcflow/sdk/core/app_aware.py

@@ -1,6 +1,7 @@
 """
 Utility base class for making classes aware of the overall application context.
 """
+
 from __future__ import annotations
 from typing import TYPE_CHECKING
 

hpcflow/sdk/core/cache.py

@@ -115,9 +115,9 @@ class ObjectCache:
         num_runs = workflow.num_EARs
 
         all_store_runs: Sequence[StoreEAR] = workflow._store.get_EARs(range(num_runs))
-        all_store_iters: Sequence[
-            StoreElementIter
-        ] = workflow._store.get_element_iterations(range(num_iters))
+        all_store_iters: Sequence[StoreElementIter] = (
+            workflow._store.get_element_iterations(range(num_iters))
+        )
         all_store_elements: Sequence[StoreElement] = workflow._store.get_elements(
             range(num_elems)
         )

hpcflow/sdk/core/command_files.py

@@ -585,12 +585,10 @@ class _FileContentsSpecifier(JSONLike):
         return (self.normalised_path, [data_ref], is_new)
 
     @overload
-    def _get_value(self, value_name: None = None) -> dict[str, Any]:
-        ...
+    def _get_value(self, value_name: None = None) -> dict[str, Any]: ...
 
     @overload
-    def _get_value(self, value_name: str) -> Any:
-        ...
+    def _get_value(self, value_name: str) -> Any: ...
 
     def _get_value(self, value_name: str | None = None) -> Any:
         # TODO: fix