hoa-tools 1.0.7__py3-none-any.whl → 1.0.9__py3-none-any.whl

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Files changed (24) hide show
  1. hoa_tools/_version.py +16 -3
  2. hoa_tools/data/metadata/metadata/A129_lung_VOI-02_2.0um_bm18.json +86 -21
  3. hoa_tools/data/metadata/metadata/LADAF-2020-31_brain_hippocampus_2.45um_bm05.json +1 -7
  4. hoa_tools/data/metadata/metadata/LADAF-2021-17_brain_VOI-03.2_2.256um_bm18.json +7 -1
  5. hoa_tools/data/metadata/metadata/LADAF-2021-17_brain_complete-organ_7.72um_bm18.json +240 -0
  6. hoa_tools/data/metadata/metadata/LADAF-2021-17_colon_VOI-01_1.444um_bm05.json +69 -54
  7. hoa_tools/data/metadata/metadata/LADAF-2021-17_colon_VOI-01_4.502um_bm18.json +69 -54
  8. hoa_tools/data/metadata/metadata/LADAF-2021-17_colon_VOI-07_1.444um_bm05.json +69 -54
  9. hoa_tools/data/metadata/metadata/LADAF-2021-17_colon_VOI-11_4.502um_bm18.json +69 -54
  10. hoa_tools/data/metadata/metadata/LADAF-2021-17_colon_complete-organ_20.025um_bm18.json +69 -54
  11. hoa_tools/data/metadata/metadata/LADAF-2021-17_liver_VOI-01_4.14um_bm18.json +44 -57
  12. hoa_tools/data/metadata/metadata/LADAF-2021-17_liver_VOI-02_4.14um_bm18.json +44 -57
  13. hoa_tools/data/metadata/metadata/LADAF-2021-17_liver_VOI-03_4.14um_bm18.json +44 -57
  14. hoa_tools/data/metadata/metadata/LADAF-2021-17_liver_VOI-08_4.14um_bm18.json +44 -57
  15. hoa_tools/data/metadata/metadata/LADAF-2021-17_testis_1_VOI-01_2.02um_bm18.json +44 -57
  16. hoa_tools/data/metadata/metadata/LADAF-2021-17_testis_1_complete-organ_9.595um_bm18.json +44 -57
  17. hoa_tools/data/metadata/metadata/LADAF-2021-17_testis_2_VOI-02_2.02um_bm18.json +44 -57
  18. hoa_tools/data/metadata/metadata/LADAF-2021-17_testis_2_complete-organ_9.595um_bm18.json +44 -57
  19. hoa_tools/metadata.py +9 -6
  20. {hoa_tools-1.0.7.dist-info → hoa_tools-1.0.9.dist-info}/METADATA +1 -1
  21. {hoa_tools-1.0.7.dist-info → hoa_tools-1.0.9.dist-info}/RECORD +24 -23
  22. {hoa_tools-1.0.7.dist-info → hoa_tools-1.0.9.dist-info}/WHEEL +0 -0
  23. {hoa_tools-1.0.7.dist-info → hoa_tools-1.0.9.dist-info}/licenses/LICENSE.md +0 -0
  24. {hoa_tools-1.0.7.dist-info → hoa_tools-1.0.9.dist-info}/top_level.txt +0 -0
hoa_tools/data/metadata/metadata/LADAF-2021-17_liver_VOI-02_4.14um_bm18.json CHANGED
@@ -69,22 +69,18 @@
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  "experiment_type": "Tomography"
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  },
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  "proposal": {
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- "proposal_number": "md1290",
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- "title": "Bridging the gap between cellular and whole body imaging using Hierarchical Phase-Contrast Tomography: HiP-CT",
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+ "proposal_number": "md1389",
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+ "title": "HUB Proposal: Human Organ Atlas Hub (HOAHub)",
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  "proposers": [
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  "Peter Lee",
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  "Claire Walsh",
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- "Brian Bay",
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- "Elodie Boller",
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+ "Anastasia Yendiki",
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  "Maximilian Ackermann",
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  "Alexandre Bellier",
81
- "Olivier Palombi",
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+ "Bernadette de Bakker",
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  "Paul Tafforeau",
83
- "Simon Walker-Samuel",
84
- "Philippe Chaffanjon",
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  "Danny Jonigk",
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- "Willi Wagner",
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- "Rebecca Shipley"
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+ "Stijn Verleden"
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  ]
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  },
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  "registration": {
@@ -110,16 +106,28 @@
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  "roles": ["Funding acquisition"]
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  },
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  {
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- "first_name": "Brian",
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- "last_name": "Bay",
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- "orcid": "0000-0002-6870-259X",
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+ "first_name": "Anastasia",
110
+ "last_name": "Yendiki",
111
+ "orcid": "0000-0003-1386-3828",
112
+ "roles": ["Funding acquisition"]
113
+ },
114
+ {
115
+ "first_name": "Andrew",
116
+ "last_name": "Cook",
117
+ "orcid": "0000-0001-5079-7546",
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+ "roles": ["Investigation"]
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+ },
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+ {
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+ "first_name": "Bernadette",
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+ "last_name": "de Bakker",
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+ "orcid": "0000-0003-0758-4064",
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  "roles": ["Funding acquisition"]
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  },
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  {
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  "first_name": "Claire",
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  "last_name": "Walsh",
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  "orcid": "0000-0003-3769-3392",
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- "roles": ["Conceptualization", "Funding acquisition"]
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+ "roles": ["Conceptualization", "Funding acquisition", "Investigation"]
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  },
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  {
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  "first_name": "Danny",
@@ -133,12 +141,6 @@
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  "orcid": "0000-0002-1365-1908",
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  "roles": ["Data curation", "Software"]
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  },
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- {
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- "first_name": "Elodie",
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- "last_name": "Boller",
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- "orcid": null,
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- "roles": ["Funding acquisition"]
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- },
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  {
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  "first_name": "Guillaume",
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  "last_name": "Gaisne",
@@ -155,7 +157,7 @@
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  "first_name": "Joanna",
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  "last_name": "Purzycka",
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  "orcid": "0000-0001-8742-5279",
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- "roles": ["Data curation"]
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+ "roles": ["Data curation", "Investigation"]
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  },
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  {
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  "first_name": "Joseph",
@@ -163,46 +165,39 @@
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  "orcid": "0000-0002-8424-9510",
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  "roles": ["Data curation", "Investigation", "Software"]
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  },
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+ {
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+ "first_name": "Joseph",
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+ "last_name": "Jacob",
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+ "orcid": "0000-0002-8054-2293",
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+ "roles": ["Investigation"]
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+ },
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  {
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  "first_name": "Maximilian",
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  "last_name": "Ackermann",
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  "orcid": "0000-0001-9996-2477",
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  "roles": ["Funding acquisition"]
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  },
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- {
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- "first_name": "Olivier",
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- "last_name": "Palombi",
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- "orcid": null,
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- "roles": ["Funding acquisition"]
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- },
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  {
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  "first_name": "Paul",
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  "last_name": "Tafforeau",
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  "orcid": "0000-0002-5962-1683",
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- "roles": ["Conceptualization", "Data curation", "Funding acquisition"]
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+ "roles": [
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+ "Conceptualization",
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+ "Data curation",
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+ "Funding acquisition",
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+ "Investigation"
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+ ]
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  },
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  {
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  "first_name": "Peter",
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  "last_name": "Lee",
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  "orcid": "0000-0002-3898-8881",
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- "roles": ["Conceptualization", "Funding acquisition"]
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+ "roles": ["Conceptualization", "Funding acquisition", "Investigation"]
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  },
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  {
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- "first_name": "Philippe",
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- "last_name": "Chaffanjon",
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- "orcid": "0000-0002-7954-2798",
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- "roles": ["Funding acquisition"]
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- },
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- {
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- "first_name": "Rebecca",
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- "last_name": "Shipley",
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- "orcid": "0000-0002-2818-6228",
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- "roles": ["Funding acquisition"]
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- },
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- {
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- "first_name": "Simon",
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- "last_name": "Walker-Samuel",
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- "orcid": "0000-0003-3530-9166",
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+ "first_name": "Stijn",
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+ "last_name": "Verleden",
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+ "orcid": "0000-0002-9656-5844",
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  "roles": ["Funding acquisition"]
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  },
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  {
@@ -210,36 +205,28 @@
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  "last_name": "Urban",
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  "orcid": "0000-0002-0352-8180",
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  "roles": ["Data curation", "Investigation", "Software"]
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- },
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- {
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- "first_name": "Willi",
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- "last_name": "Wagner",
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- "orcid": null,
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- "roles": ["Funding acquisition"]
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  }
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  ],
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  "doi": null,
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  "author_list": [
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  "The Human Organ Atlas Collaboration",
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  "Alexandre Bellier",
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- "Brian Bay",
214
+ "Anastasia Yendiki",
215
+ "Andrew Cook",
216
+ "Bernadette de Bakker",
226
217
  "Claire Walsh",
227
218
  "Danny Jonigk",
228
219
  "David Stansby",
229
- "Elodie Boller",
230
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  "Guillaume Gaisne",
231
221
  "Hector Dejea I Velardo",
232
222
  "Joanna Purzycka",
233
223
  "Joseph Brunet",
224
+ "Joseph Jacob",
234
225
  "Maximilian Ackermann",
235
- "Olivier Palombi",
236
226
  "Paul Tafforeau",
237
227
  "Peter Lee",
238
- "Philippe Chaffanjon",
239
- "Rebecca Shipley",
240
- "Simon Walker-Samuel",
241
- "Theresa Urban",
242
- "Willi Wagner"
228
+ "Stijn Verleden",
229
+ "Theresa Urban"
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  ]
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  },
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  "metadata_version": "1.1"
hoa_tools/data/metadata/metadata/LADAF-2021-17_liver_VOI-03_4.14um_bm18.json CHANGED
@@ -69,22 +69,18 @@
69
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  "experiment_type": "Tomography"
70
70
  },
71
71
  "proposal": {
72
- "proposal_number": "md1290",
73
- "title": "Bridging the gap between cellular and whole body imaging using Hierarchical Phase-Contrast Tomography: HiP-CT",
72
+ "proposal_number": "md1389",
73
+ "title": "HUB Proposal: Human Organ Atlas Hub (HOAHub)",
74
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  "proposers": [
75
75
  "Peter Lee",
76
76
  "Claire Walsh",
77
- "Brian Bay",
78
- "Elodie Boller",
77
+ "Anastasia Yendiki",
79
78
  "Maximilian Ackermann",
80
79
  "Alexandre Bellier",
81
- "Olivier Palombi",
80
+ "Bernadette de Bakker",
82
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  "Paul Tafforeau",
83
- "Simon Walker-Samuel",
84
- "Philippe Chaffanjon",
85
82
  "Danny Jonigk",
86
- "Willi Wagner",
87
- "Rebecca Shipley"
83
+ "Stijn Verleden"
88
84
  ]
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  },
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  "registration": {
@@ -110,16 +106,28 @@
110
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  "roles": ["Funding acquisition"]
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  },
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  {
113
- "first_name": "Brian",
114
- "last_name": "Bay",
115
- "orcid": "0000-0002-6870-259X",
109
+ "first_name": "Anastasia",
110
+ "last_name": "Yendiki",
111
+ "orcid": "0000-0003-1386-3828",
112
+ "roles": ["Funding acquisition"]
113
+ },
114
+ {
115
+ "first_name": "Andrew",
116
+ "last_name": "Cook",
117
+ "orcid": "0000-0001-5079-7546",
118
+ "roles": ["Investigation"]
119
+ },
120
+ {
121
+ "first_name": "Bernadette",
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+ "last_name": "de Bakker",
123
+ "orcid": "0000-0003-0758-4064",
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  "roles": ["Funding acquisition"]
117
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  },
118
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  {
119
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  "first_name": "Claire",
120
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  "last_name": "Walsh",
121
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  "orcid": "0000-0003-3769-3392",
122
- "roles": ["Conceptualization", "Funding acquisition"]
130
+ "roles": ["Conceptualization", "Funding acquisition", "Investigation"]
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  },
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  {
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  "first_name": "Danny",
@@ -133,12 +141,6 @@
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  "orcid": "0000-0002-1365-1908",
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  "roles": ["Data curation", "Software"]
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  },
136
- {
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- "first_name": "Elodie",
138
- "last_name": "Boller",
139
- "orcid": null,
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- "roles": ["Funding acquisition"]
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- },
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  {
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  "first_name": "Guillaume",
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  "last_name": "Gaisne",
@@ -155,7 +157,7 @@
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  "first_name": "Joanna",
156
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  "last_name": "Purzycka",
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  "orcid": "0000-0001-8742-5279",
158
- "roles": ["Data curation"]
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+ "roles": ["Data curation", "Investigation"]
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  },
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  {
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  "first_name": "Joseph",
@@ -163,46 +165,39 @@
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  "orcid": "0000-0002-8424-9510",
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  "roles": ["Data curation", "Investigation", "Software"]
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  },
168
+ {
169
+ "first_name": "Joseph",
170
+ "last_name": "Jacob",
171
+ "orcid": "0000-0002-8054-2293",
172
+ "roles": ["Investigation"]
173
+ },
166
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  {
167
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  "first_name": "Maximilian",
168
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  "last_name": "Ackermann",
169
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  "orcid": "0000-0001-9996-2477",
170
178
  "roles": ["Funding acquisition"]
171
179
  },
172
- {
173
- "first_name": "Olivier",
174
- "last_name": "Palombi",
175
- "orcid": null,
176
- "roles": ["Funding acquisition"]
177
- },
178
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  {
179
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  "first_name": "Paul",
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  "last_name": "Tafforeau",
181
183
  "orcid": "0000-0002-5962-1683",
182
- "roles": ["Conceptualization", "Data curation", "Funding acquisition"]
184
+ "roles": [
185
+ "Conceptualization",
186
+ "Data curation",
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+ "Funding acquisition",
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+ "Investigation"
189
+ ]
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  },
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  {
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  "first_name": "Peter",
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  "last_name": "Lee",
187
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  "orcid": "0000-0002-3898-8881",
188
- "roles": ["Conceptualization", "Funding acquisition"]
195
+ "roles": ["Conceptualization", "Funding acquisition", "Investigation"]
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  },
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  {
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- "first_name": "Philippe",
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- "last_name": "Chaffanjon",
193
- "orcid": "0000-0002-7954-2798",
194
- "roles": ["Funding acquisition"]
195
- },
196
- {
197
- "first_name": "Rebecca",
198
- "last_name": "Shipley",
199
- "orcid": "0000-0002-2818-6228",
200
- "roles": ["Funding acquisition"]
201
- },
202
- {
203
- "first_name": "Simon",
204
- "last_name": "Walker-Samuel",
205
- "orcid": "0000-0003-3530-9166",
198
+ "first_name": "Stijn",
199
+ "last_name": "Verleden",
200
+ "orcid": "0000-0002-9656-5844",
206
201
  "roles": ["Funding acquisition"]
207
202
  },
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203
  {
@@ -210,36 +205,28 @@
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  "last_name": "Urban",
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  "orcid": "0000-0002-0352-8180",
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  "roles": ["Data curation", "Investigation", "Software"]
213
- },
214
- {
215
- "first_name": "Willi",
216
- "last_name": "Wagner",
217
- "orcid": null,
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- "roles": ["Funding acquisition"]
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208
  }
220
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  ],
221
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  "doi": null,
222
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  "author_list": [
223
212
  "The Human Organ Atlas Collaboration",
224
213
  "Alexandre Bellier",
225
- "Brian Bay",
214
+ "Anastasia Yendiki",
215
+ "Andrew Cook",
216
+ "Bernadette de Bakker",
226
217
  "Claire Walsh",
227
218
  "Danny Jonigk",
228
219
  "David Stansby",
229
- "Elodie Boller",
230
220
  "Guillaume Gaisne",
231
221
  "Hector Dejea I Velardo",
232
222
  "Joanna Purzycka",
233
223
  "Joseph Brunet",
224
+ "Joseph Jacob",
234
225
  "Maximilian Ackermann",
235
- "Olivier Palombi",
236
226
  "Paul Tafforeau",
237
227
  "Peter Lee",
238
- "Philippe Chaffanjon",
239
- "Rebecca Shipley",
240
- "Simon Walker-Samuel",
241
- "Theresa Urban",
242
- "Willi Wagner"
228
+ "Stijn Verleden",
229
+ "Theresa Urban"
243
230
  ]
244
231
  },
245
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  "metadata_version": "1.1"
hoa_tools/data/metadata/metadata/LADAF-2021-17_liver_VOI-08_4.14um_bm18.json CHANGED
@@ -69,22 +69,18 @@
69
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  "experiment_type": "Tomography"
70
70
  },
71
71
  "proposal": {
72
- "proposal_number": "md1290",
73
- "title": "Bridging the gap between cellular and whole body imaging using Hierarchical Phase-Contrast Tomography: HiP-CT",
72
+ "proposal_number": "md1389",
73
+ "title": "HUB Proposal: Human Organ Atlas Hub (HOAHub)",
74
74
  "proposers": [
75
75
  "Peter Lee",
76
76
  "Claire Walsh",
77
- "Brian Bay",
78
- "Elodie Boller",
77
+ "Anastasia Yendiki",
79
78
  "Maximilian Ackermann",
80
79
  "Alexandre Bellier",
81
- "Olivier Palombi",
80
+ "Bernadette de Bakker",
82
81
  "Paul Tafforeau",
83
- "Simon Walker-Samuel",
84
- "Philippe Chaffanjon",
85
82
  "Danny Jonigk",
86
- "Willi Wagner",
87
- "Rebecca Shipley"
83
+ "Stijn Verleden"
88
84
  ]
89
85
  },
90
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  "registration": {
@@ -110,16 +106,28 @@
110
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  "roles": ["Funding acquisition"]
111
107
  },
112
108
  {
113
- "first_name": "Brian",
114
- "last_name": "Bay",
115
- "orcid": "0000-0002-6870-259X",
109
+ "first_name": "Anastasia",
110
+ "last_name": "Yendiki",
111
+ "orcid": "0000-0003-1386-3828",
112
+ "roles": ["Funding acquisition"]
113
+ },
114
+ {
115
+ "first_name": "Andrew",
116
+ "last_name": "Cook",
117
+ "orcid": "0000-0001-5079-7546",
118
+ "roles": ["Investigation"]
119
+ },
120
+ {
121
+ "first_name": "Bernadette",
122
+ "last_name": "de Bakker",
123
+ "orcid": "0000-0003-0758-4064",
116
124
  "roles": ["Funding acquisition"]
117
125
  },
118
126
  {
119
127
  "first_name": "Claire",
120
128
  "last_name": "Walsh",
121
129
  "orcid": "0000-0003-3769-3392",
122
- "roles": ["Conceptualization", "Funding acquisition"]
130
+ "roles": ["Conceptualization", "Funding acquisition", "Investigation"]
123
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  },
124
132
  {
125
133
  "first_name": "Danny",
@@ -133,12 +141,6 @@
133
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  "orcid": "0000-0002-1365-1908",
134
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  "roles": ["Data curation", "Software"]
135
143
  },
136
- {
137
- "first_name": "Elodie",
138
- "last_name": "Boller",
139
- "orcid": null,
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- "roles": ["Funding acquisition"]
141
- },
142
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  {
143
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  "first_name": "Guillaume",
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146
  "last_name": "Gaisne",
@@ -155,7 +157,7 @@
155
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  "first_name": "Joanna",
156
158
  "last_name": "Purzycka",
157
159
  "orcid": "0000-0001-8742-5279",
158
- "roles": ["Data curation"]
160
+ "roles": ["Data curation", "Investigation"]
159
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  },
160
162
  {
161
163
  "first_name": "Joseph",
@@ -163,46 +165,39 @@
163
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  "orcid": "0000-0002-8424-9510",
164
166
  "roles": ["Data curation", "Investigation", "Software"]
165
167
  },
168
+ {
169
+ "first_name": "Joseph",
170
+ "last_name": "Jacob",
171
+ "orcid": "0000-0002-8054-2293",
172
+ "roles": ["Investigation"]
173
+ },
166
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  {
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  "first_name": "Maximilian",
168
176
  "last_name": "Ackermann",
169
177
  "orcid": "0000-0001-9996-2477",
170
178
  "roles": ["Funding acquisition"]
171
179
  },
172
- {
173
- "first_name": "Olivier",
174
- "last_name": "Palombi",
175
- "orcid": null,
176
- "roles": ["Funding acquisition"]
177
- },
178
180
  {
179
181
  "first_name": "Paul",
180
182
  "last_name": "Tafforeau",
181
183
  "orcid": "0000-0002-5962-1683",
182
- "roles": ["Conceptualization", "Data curation", "Funding acquisition"]
184
+ "roles": [
185
+ "Conceptualization",
186
+ "Data curation",
187
+ "Funding acquisition",
188
+ "Investigation"
189
+ ]
183
190
  },
184
191
  {
185
192
  "first_name": "Peter",
186
193
  "last_name": "Lee",
187
194
  "orcid": "0000-0002-3898-8881",
188
- "roles": ["Conceptualization", "Funding acquisition"]
195
+ "roles": ["Conceptualization", "Funding acquisition", "Investigation"]
189
196
  },
190
197
  {
191
- "first_name": "Philippe",
192
- "last_name": "Chaffanjon",
193
- "orcid": "0000-0002-7954-2798",
194
- "roles": ["Funding acquisition"]
195
- },
196
- {
197
- "first_name": "Rebecca",
198
- "last_name": "Shipley",
199
- "orcid": "0000-0002-2818-6228",
200
- "roles": ["Funding acquisition"]
201
- },
202
- {
203
- "first_name": "Simon",
204
- "last_name": "Walker-Samuel",
205
- "orcid": "0000-0003-3530-9166",
198
+ "first_name": "Stijn",
199
+ "last_name": "Verleden",
200
+ "orcid": "0000-0002-9656-5844",
206
201
  "roles": ["Funding acquisition"]
207
202
  },
208
203
  {
@@ -210,36 +205,28 @@
210
205
  "last_name": "Urban",
211
206
  "orcid": "0000-0002-0352-8180",
212
207
  "roles": ["Data curation", "Investigation", "Software"]
213
- },
214
- {
215
- "first_name": "Willi",
216
- "last_name": "Wagner",
217
- "orcid": null,
218
- "roles": ["Funding acquisition"]
219
208
  }
220
209
  ],
221
210
  "doi": null,
222
211
  "author_list": [
223
212
  "The Human Organ Atlas Collaboration",
224
213
  "Alexandre Bellier",
225
- "Brian Bay",
214
+ "Anastasia Yendiki",
215
+ "Andrew Cook",
216
+ "Bernadette de Bakker",
226
217
  "Claire Walsh",
227
218
  "Danny Jonigk",
228
219
  "David Stansby",
229
- "Elodie Boller",
230
220
  "Guillaume Gaisne",
231
221
  "Hector Dejea I Velardo",
232
222
  "Joanna Purzycka",
233
223
  "Joseph Brunet",
224
+ "Joseph Jacob",
234
225
  "Maximilian Ackermann",
235
- "Olivier Palombi",
236
226
  "Paul Tafforeau",
237
227
  "Peter Lee",
238
- "Philippe Chaffanjon",
239
- "Rebecca Shipley",
240
- "Simon Walker-Samuel",
241
- "Theresa Urban",
242
- "Willi Wagner"
228
+ "Stijn Verleden",
229
+ "Theresa Urban"
243
230
  ]
244
231
  },
245
232
  "metadata_version": "1.1"