hoa-tools 1.0.4__py3-none-any.whl → 1.0.5__py3-none-any.whl

hoa_tools/data/metadata/metadata/S-20-29_lung_left_VOI-01_6.5um_bm05.json

@@ -43,8 +43,8 @@
     "n_ref": 3,
     "n_dark": 0,
     "latency_time": 0.0015,
-    "exposure_time": 0.015,
-    "subframe_time": null,
+    "exposure_time": 0.06,
+    "subframe_time": 0.015,
     "n_subframes": 4,
     "scan_type": "zseries",
     "scan_range": 360.0,
@@ -201,5 +201,5 @@
       "Willi Wagner"
     ]
   },
-  "metadata_version": "1.0"
+  "metadata_version": "1.1"
 }

hoa_tools/data/metadata/metadata/S-20-29_lung_left_VOI-02_6.5um_bm05.json

@@ -43,8 +43,8 @@
     "n_ref": 3,
     "n_dark": 0,
     "latency_time": 0.0015,
-    "exposure_time": 0.015,
-    "subframe_time": null,
+    "exposure_time": 0.06,
+    "subframe_time": 0.015,
     "n_subframes": 4,
     "scan_type": "zseries",
     "scan_range": 360.0,
@@ -201,5 +201,5 @@
       "Willi Wagner"
     ]
   },
-  "metadata_version": "1.0"
+  "metadata_version": "1.1"
 }

hoa_tools/data/metadata/metadata/S-20-29_lung_left_VOI-04_6.5um_bm05.json

@@ -43,8 +43,8 @@
     "n_ref": 3,
     "n_dark": 0,
     "latency_time": 0.0015,
-    "exposure_time": 0.015,
-    "subframe_time": null,
+    "exposure_time": 0.06,
+    "subframe_time": 0.015,
     "n_subframes": 4,
     "scan_type": "zseries",
     "scan_range": 360.0,
@@ -201,5 +201,5 @@
       "Willi Wagner"
     ]
   },
-  "metadata_version": "1.0"
+  "metadata_version": "1.1"
 }

hoa_tools/data/metadata/metadata/S-20-29_lung_left_VOI-05_6.5um_bm05.json

@@ -43,8 +43,8 @@
     "n_ref": 3,
     "n_dark": 0,
     "latency_time": 0.0015,
-    "exposure_time": 0.015,
-    "subframe_time": null,
+    "exposure_time": 0.06,
+    "subframe_time": 0.015,
     "n_subframes": 4,
     "scan_type": "zseries",
     "scan_range": 360.0,
@@ -201,5 +201,5 @@
       "Willi Wagner"
     ]
   },
-  "metadata_version": "1.0"
+  "metadata_version": "1.1"
 }

hoa_tools/data/metadata/metadata/S-20-29_lung_left_complete-organ_25.31um_bm05.json

@@ -43,8 +43,8 @@
     "n_ref": 3,
     "n_dark": 0,
     "latency_time": 0.0007,
-    "exposure_time": 0.007,
-    "subframe_time": null,
+    "exposure_time": 0.028,
+    "subframe_time": 0.007,
     "n_subframes": 4,
     "scan_type": "zseries",
     "scan_range": 360.0,
@@ -195,5 +195,5 @@
       "Willi Wagner"
     ]
   },
-  "metadata_version": "1.0"
+  "metadata_version": "1.1"
 }

hoa_tools/dataset.py

@@ -122,7 +122,7 @@ class Dataset(HOAMetadata):
         """
         Get a set of all datasets that are registered (even indirectly) to this dataset.
         """
-        import hoa_tools.registration
+        import hoa_tools.registration  # noqa: PLC0415
 
         dataset_names = nx.node_connected_component(
             hoa_tools.registration.Inventory._graph.to_undirected(),  # noqa: SLF001
@@ -242,7 +242,7 @@ def change_metadata_directory(data_dir: Path) -> None:
 
 
 def _populate_registrations_from_metadata(datasets: dict[str, Dataset]) -> None:
-    from hoa_tools.registration import Inventory, build_transform
+    from hoa_tools.registration import Inventory, build_transform  # noqa: PLC0415
 
     Inventory._clear()  # noqa: SLF001
     for dataset_name in datasets:
@@ -250,12 +250,14 @@ def _populate_registrations_from_metadata(datasets: dict[str, Dataset]) -> None:
         if (registration := dataset.registration) is not None:
             source_dataset = _DATASETS[registration.source_dataset]
             if registration.target_dataset not in _DATASETS:
-                warnings.warn(
-                    f"Did not find target dataset {registration.target_dataset} "
-                    f"in dataset inventory. Not adding {registration.source_dataset} "
-                    "to registration inventory.",
-                    stacklevel=1,
-                )
+                if registration.source_dataset not in ["A129_lung_VOI-02_2.0um_bm18"]:
+                    warnings.warn(
+                        f"Did not find target dataset {registration.target_dataset} "
+                        f"in dataset inventory. "
+                        "Not adding {registration.source_dataset} "
+                        "to registration inventory.",
+                        stacklevel=1,
+                    )
                 continue
             target_dataset = _DATASETS[registration.target_dataset]
             transform = build_transform(

hoa_tools/metadata.py

@@ -1,6 +1,6 @@
 # generated by datamodel-codegen:
 #   filename:  metadata-schema.json
-#   timestamp: 2025-04-25T10:05:35+00:00
+#   timestamp: 2025-07-07T14:56:30+00:00
 
 from __future__ import annotations
 
@@ -486,6 +486,7 @@ class Scan(BaseModel):
             "uniform multibunch",
             "28*12+1 bunch",
             "4 bunch",
+            "2*1/3 multibunch",
         ]
         | None,
         Field(
@@ -604,6 +605,7 @@ class Scan(BaseModel):
             "GGG 20um",
             "GAGG 1000um, reflective",
             "GAGG 100um, reflective",
+            "GAGG 50um, reflective",
             "Dual LySO:Ce 5000um, reflective",
         ]
         | None,
@@ -762,6 +764,6 @@ class HOAMetadata(BaseModel):
     ] = None
     citation: Annotated[Citation, Field(title="Dataset citation")]
     metadata_version: Annotated[
-        Literal["1.0"],
+        Literal["1.1"],
         Field(description="Version of this metadata file.", title="Metadata Version"),
-    ] = "1.0"
+    ] = "1.1"

{hoa_tools-1.0.4.dist-info → hoa_tools-1.0.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: hoa-tools
-Version: 1.0.4
+Version: 1.0.5
 Summary: Tools for working with the Human Organ Atlas
 Author-email: David Stansby <d.stansby@ucl.ac.uk>
 License: Copyright (c) 2024, David Stansby

hoa_tools-1.0.5.dist-info/RECORD

@@ -0,0 +1,242 @@
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+hoa_tools/_version.py,sha256=cafGA7j4exK_daS29O0wW2JM2p5b8FwYDLqAYJR0jWo,511
+hoa_tools/dataset.py,sha256=KGODPuxY9sxcEX5Chbr6ih7jHQ4yvBstPptbHPbmhiU,9776
+hoa_tools/inventory.py,sha256=44IbE1eLFTetAeCadpBFYXXIwcX5fagq76zSMLWBOmE,613
+hoa_tools/metadata.py,sha256=DscI5ocepHgCEbhqo-1_EqqH3EQ3leRLmN4ZhEpr_40,22920
+hoa_tools/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+hoa_tools/registration.py,sha256=BXxJYMHh6pngwTnjcx7phryWb_b0LHsXxsOvUk_es7k,3481
+hoa_tools/types.py,sha256=X8GzZXknwgmtTLWR2d_JxEfoavXAQ1zVrf8BaNdevSw,1452
+hoa_tools/voi.py,sha256=t6XAPMpS70W5OphWr3U4j8eXMVElR1OuuzJCoDLs7zc,7868
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