hdim-opt 1.1.3__py3-none-any.whl → 1.2.2__py3-none-any.whl

hdim_opt/__init__.py

@@ -1,7 +1,7 @@
 # hdim_opt/__init__.py
 
 # package version
-__version__ = "1.1.3"
+__version__ = "1.2.2"
 __all__ = ['quasar', 'hds', 'sobol', 'sensitivity', 'test_functions', 'quasar_helpers'] # available for star imports
 
 # import core components

hdim_opt/hyperellipsoid_sampling.py

@@ -553,7 +553,7 @@ def sample(n_samples, bounds,
         # dark visualization parameters for better sample visuals
 
         # samples
-        fig, ax = plt.subplots(1,2,figsize=(11,5.5))
+        fig, ax = plt.subplots(1,2,figsize=(9,5))
         
         ax[0].scatter(hds_sequence_plot[:, 0], hds_sequence_plot[:, 1], s=0.67, zorder=5, color='deepskyblue', 
                       label='HDS Samples')

hdim_opt/quasar_optimization.py

@@ -58,9 +58,12 @@ def initialize_population(popsize, bounds, init, hds_weights, seed, verbose):
                 print(f'Initializing: Random population (N={popsize}, D={n_dimensions}).')
             initial_population = np.random.uniform(low=bounds[:, 0], high=bounds[:, 1], size=(popsize, n_dimensions))
     else:
-        initial_population = init
+        if init.ndim == 1:
+            initial_population = init.reshape(-1,1)
+        else:
+            initial_population = init   
         if verbose:
-            custom_popsize, custom_n_dimensions = init.shape
+            custom_popsize, custom_n_dimensions = initial_population.shape
             print(f'Initializing: Custom population (N={custom_popsize}, D={custom_n_dimensions}).')
 
     return initial_population
@@ -260,14 +263,13 @@ def evolve_generation(obj_function, population, fitnesses, best_solution,
         
     return new_population, new_fitnesses
 
-def covariance_reinit(population, current_fitnesses, bounds, vectorized):
+def asym_reinit(population, current_fitnesses, bounds, reinit_method, seed, vectorized):
     '''
     Objective:
         - Reinitializes the worst 33% solutions in the population.
-        - Locations are determined based on a Gaussian distribution from the covariance matrix of 25% best solutions.
-            - Noise is added to enhance diversity.
-        - Probability decays to 33% at the 33% generation.
-        - Conceptualizes particles tunneling to a more stable location.
+        - Locations are determined based on either:
+            - 'covariance' (default): Gaussian distribution from the covariance of 25% best solutions (exploitation).
+            - 'sobol': Uniformly Sobol distributed within the bounds (exploration).
     '''
 
     # reshape depending on vectorized input
@@ -276,60 +278,90 @@ def covariance_reinit(population, current_fitnesses, bounds, vectorized):
     else:
         popsize, dimensions = population.shape
 
-    # handle case where not enough points for covariance matrix
+    # handle case where not enough points for reliable covariance matrix
     if popsize < dimensions + 1:
         return population
-
-    # keep 25% of best solutions
-    num_to_keep_factor = 0.25
-    num_to_keep = int(popsize * num_to_keep_factor)
-    if num_to_keep <= dimensions:
-        num_to_keep = dimensions + 1 # minimum sample size scaled by dimensions
-    
-    # identify best solutions to calculate covariance gaussian model
-    sorted_indices = np.argsort(current_fitnesses)
-    best_indices = sorted_indices[:num_to_keep]
-    if vectorized:
-        best_solutions = population[:, best_indices]
-    else:
-        best_solutions = population[best_indices]
     
-    # learn full-covariance matrix
-    if vectorized:
-        mean_vector = np.mean(best_solutions, axis=1)
-        cov_matrix = np.cov(best_solutions)
-    else:
-        mean_vector = np.mean(best_solutions, axis=0)
-        cov_matrix = np.cov(best_solutions, rowvar=False)
-
-    # add epsilon to the diagonal to prevent singular matrix issues
-    cov_matrix += np.eye(dimensions) * epsilon
-
     # identify solutions to be reset
     reset_population = 0.33
     num_to_replace = int(popsize * reset_population)
+    if num_to_replace == 0:
+        return population
+        
+    sorted_indices = np.argsort(current_fitnesses)
     worst_indices = sorted_indices[-num_to_replace:]
+    
+    # initializing new solutions
+    new_solutions = None
+    
+    # covariance reinitalization; exploitation
+    if reinit_method == 'covariance':
+        
+        # keep 25% of best solutions
+        num_to_keep_factor = 0.25
+        num_to_keep = int(popsize * num_to_keep_factor)
+        if num_to_keep <= dimensions:
+            num_to_keep = dimensions + 1 # minimum sample size scaled by dimensions
+        
+        # identify best solutions to calculate covariance gaussian model
+        best_indices = sorted_indices[:num_to_keep]
+        if vectorized:
+            best_solutions = population[:, best_indices]
+        else:
+            best_solutions = population[best_indices]
+        
+        # learn full-covariance matrix
+        if vectorized:
+            mean_vector = np.mean(best_solutions, axis=1)
+            cov_matrix = np.cov(best_solutions)
+        else:
+            mean_vector = np.mean(best_solutions, axis=0)
+            cov_matrix = np.cov(best_solutions, rowvar=False)
 
-    # new solutions sampled from multivariate normal distribution
-    if vectorized:
-        new_solutions_sampled = np.random.multivariate_normal(mean=mean_vector, cov=cov_matrix, size=num_to_replace).T
-    else:
+        # add epsilon to the diagonal to prevent singular matrix issues
+        cov_matrix += np.eye(dimensions) * epsilon
+
+        # new solutions sampled from multivariate normal distribution
         new_solutions_sampled = np.random.multivariate_normal(mean=mean_vector, cov=cov_matrix, size=num_to_replace)
-    
-    # add noise for exploration
-    noise_scale = (bounds[:, 1] - bounds[:, 0]) / 20.0
-    if vectorized:
-        noise = np.random.normal(0, noise_scale[:, np.newaxis], size=new_solutions_sampled.shape)
-        new_solutions = new_solutions_sampled + noise
-    else:
-        noise = np.random.normal(0, noise_scale, size=new_solutions_sampled.shape)
-        new_solutions = new_solutions_sampled + noise
+        
+        # add noise for exploration
+        noise_scale = (bounds[:, 1] - bounds[:, 0]) / 20.0
 
-    # clip new solutions to bounds
-    if vectorized:
-        population[:, worst_indices] = np.clip(new_solutions, bounds[:, np.newaxis, 0], bounds[:, np.newaxis, 1])
-    else:
-        population[worst_indices] = np.clip(new_solutions, bounds[:, 0], bounds[:, 1])
+        # reshape
+        if vectorized:
+            new_solutions_sampled = new_solutions_sampled.T 
+            noise = np.random.normal(0, noise_scale[:, np.newaxis], size=new_solutions_sampled.shape)
+            new_solutions = new_solutions_sampled + noise
+        else:
+            noise = np.random.normal(0, noise_scale, size=new_solutions_sampled.shape)
+            new_solutions = new_solutions_sampled + noise
+
+    # sobol reinitialization (high exploration)
+    elif reinit_method == 'sobol':
+        
+        # generate sobol samples
+        sobol_sampler = stats.qmc.Sobol(d=dimensions, seed=seed) 
+        sobol_samples_unit = sobol_sampler.random(n=num_to_replace)
+        
+        bounds_low = bounds[:, 0]
+        bounds_high = bounds[:, 1]
+        scaled_samples = stats.qmc.scale(sobol_samples_unit, bounds_low, bounds_high) 
+
+        # reshape
+        if vectorized:
+            new_solutions = scaled_samples.T
+        else:
+            new_solutions = scaled_samples
+        
+
+    # update the selected worst indices population
+    if new_solutions is not None:
+        if vectorized:
+            population[:, worst_indices] = np.clip(new_solutions, 
+                                                   bounds[:, np.newaxis, 0], 
+                                                   bounds[:, np.newaxis, 1])
+        else:
+            population[worst_indices] = np.clip(new_solutions, bounds[:, 0], bounds[:, 1])
 
     return population
     
@@ -342,7 +374,7 @@ def optimize(func, bounds, args=(),
               patience=np.inf, vectorized=False,
               hds_weights=None, kwargs={},
               constraints=None, constraint_penalty=1e9,
-              reinitialization=True,
+              reinitialization=True, reinitialization_method='covariance',
               verbose=True, plot_solutions=True, num_to_plot=10, plot_contour=True,
               workers=1, seed=None
               ):
@@ -351,7 +383,7 @@ def optimize(func, bounds, args=(),
         - Finds the optimal solution for a given objective function.
         - Designed for non-differentiable, high-dimensional problems.
         - Test functions available for local testing, called as hdim_opt.test_functions.function_name.
-            - Existing test functions: [rastrigin, ackley, sinusoid, sphere]
+            - Existing test functions: [rastrigin, ackley, sinusoid, sphere, shubert].
             
     Inputs:
         - func: Objective function to minimize.
@@ -400,9 +432,13 @@ def optimize(func, bounds, args=(),
                                         }
         - constraint_penalty: Penalty applied to each constraint violated, defaults to 1e12.
 
-        - covariance_reinit: Boolean to disable covariance reinitialization if needed.
+        - reinitialization: Boolean to disable covariance reinitialization if needed.
             - For cases where the population size is computationally prohibitive.
             - Disabled by default for 1D problems.
+        - reinitialization_method: Type of re-sampling to use in the asymptotic reinitialization.
+            - Options are ['covariance', 'sobol'].
+            - 'covariance' (exploitative) is default for most problems.
+            - 'sobol' (explorative) is optional, for high exploration and faster computation.
         
         - verbose: Displays prints and plots.
             - Mutation factor distribution shown with hdim_opt.test_functions.plot_mutations()
@@ -612,7 +648,7 @@ def optimize(func, bounds, args=(),
         else:
             reinit_proba = 0.0
         if np.random.rand() < reinit_proba:
-            population = covariance_reinit(population, current_fitnesses, bounds, vectorized=vectorized)
+            population = asym_reinit(population, current_fitnesses, bounds, reinitialization_method, seed, vectorized=vectorized)
 
         # clip population to bounds
         if vectorized:

{hdim_opt-1.1.3.dist-info → hdim_opt-1.2.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: hdim_opt
-Version: 1.1.3
+Version: 1.2.2
 Summary: Optimization toolkit for high-dimensional, non-differentiable problems.
 Author-email: Julian Soltes <jsoltes@regis.edu>
 License: MIT

hdim_opt-1.2.2.dist-info/RECORD

@@ -0,0 +1,11 @@
+hdim_opt/__init__.py,sha256=eGhYIxj6AUhhlfqgAHtPQdul64gYYLaWl8esUs-vkgI,477
+hdim_opt/hyperellipsoid_sampling.py,sha256=c34JkVciZbdAXjdfNjfC4h5NsrT2CD7Epsxpef5a1xY,24625
+hdim_opt/quasar_helpers.py,sha256=zTgar2EuWs4MLSLEO7HRcP7At1xbXLP3q4Gg7-GrggQ,14799
+hdim_opt/quasar_optimization.py,sha256=cSF_aOijVhdtvr7VEBUNVyBQ1--1s8cOuWZMuPogf5A,32093
+hdim_opt/sobol_sampling.py,sha256=Xe_Zzs13xMxCben17gT85lFsoV-GKVOAAgi7lMxnlBI,912
+hdim_opt/sobol_sensitivity.py,sha256=1ebeDSTmcLn03_MKDGiyJJ7r_ZSNCq2AKNcTX-hI23A,4384
+hdim_opt/test_functions.py,sha256=RqjKYIiwAqWplGUsH4oPHLBrVdnLRyw7f0dJX5iyJ4g,2821
+hdim_opt-1.2.2.dist-info/METADATA,sha256=jId-zu3VAQTuQFgwlSQqKTgnCtwbORXuLbqsCVbSvA4,3130
+hdim_opt-1.2.2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+hdim_opt-1.2.2.dist-info/top_level.txt,sha256=1KtWo9tEfEK3GC8D43cwVsC8yVG2Kc-9pl0hhcDjw4o,9
+hdim_opt-1.2.2.dist-info/RECORD,,

hdim_opt-1.1.3.dist-info/RECORD

@@ -1,11 +0,0 @@
-hdim_opt/__init__.py,sha256=rQp14fICPy_GoZrp-sDBopItLr3yR20C7-3U4tgQxEc,477
-hdim_opt/hyperellipsoid_sampling.py,sha256=QmbpFnZheCkwR5FOWNQS5C-FxDiNVKG97JPLqYH8G5I,24628
-hdim_opt/quasar_helpers.py,sha256=zTgar2EuWs4MLSLEO7HRcP7At1xbXLP3q4Gg7-GrggQ,14799
-hdim_opt/quasar_optimization.py,sha256=NOee1-e7mj3zUvbf-HI4a-JGrOwflG0f87HCVymANWA,30578
-hdim_opt/sobol_sampling.py,sha256=Xe_Zzs13xMxCben17gT85lFsoV-GKVOAAgi7lMxnlBI,912
-hdim_opt/sobol_sensitivity.py,sha256=1ebeDSTmcLn03_MKDGiyJJ7r_ZSNCq2AKNcTX-hI23A,4384
-hdim_opt/test_functions.py,sha256=RqjKYIiwAqWplGUsH4oPHLBrVdnLRyw7f0dJX5iyJ4g,2821
-hdim_opt-1.1.3.dist-info/METADATA,sha256=XP4iX4mdgSVX1dAyW3AwNTn5YVfmbdwMN4-tZdjMBfI,3130
-hdim_opt-1.1.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-hdim_opt-1.1.3.dist-info/top_level.txt,sha256=1KtWo9tEfEK3GC8D43cwVsC8yVG2Kc-9pl0hhcDjw4o,9
-hdim_opt-1.1.3.dist-info/RECORD,,