h5yaml 0.1.1__py3-none-any.whl → 0.2.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (17) hide show
  1. h5yaml/Data/h5_compound.yaml +36 -0
  2. h5yaml/Data/h5_testing.yaml +131 -6
  3. h5yaml/Data/h5_unsupported.yaml +56 -0
  4. h5yaml/Data/nc_testing.yaml +131 -6
  5. h5yaml/__init__.py +21 -0
  6. h5yaml/conf_from_yaml.py +22 -11
  7. h5yaml/lib/__init__.py +21 -0
  8. h5yaml/lib/adjust_attr.py +79 -0
  9. h5yaml/lib/chunksizes.py +16 -5
  10. h5yaml/yaml_h5.py +35 -66
  11. h5yaml/yaml_nc.py +85 -41
  12. {h5yaml-0.1.1.dist-info → h5yaml-0.2.0.dist-info}/METADATA +11 -8
  13. h5yaml-0.2.0.dist-info/RECORD +15 -0
  14. h5yaml-0.2.0.dist-info/licenses/LICENSE +201 -0
  15. h5yaml-0.1.1.dist-info/RECORD +0 -10
  16. h5yaml-0.1.1.dist-info/licenses/LICENSE +0 -29
  17. {h5yaml-0.1.1.dist-info → h5yaml-0.2.0.dist-info}/WHEEL +0 -0
h5yaml/Data/h5_compound.yaml ADDED
@@ -0,0 +1,36 @@
1
+ # YAML
2
+ #
3
+ # This file is part of Python package: `h5yaml`
4
+ #
5
+ # https://github.com/rmvanhees/pyxarr.git
6
+ #
7
+ # Copyright (c) 2025 - R.M. van Hees (SRON)
8
+ # All rights reserved.
9
+ #
10
+ # Licensed under the Apache License, Version 2.0 (the "License");
11
+ # you may not use this file except in compliance with the License.
12
+ # You may obtain a copy of the License at
13
+ #
14
+ # http://www.apache.org/licenses/LICENSE-2.0
15
+ #
16
+ # Unless required by applicable law or agreed to in writing, software
17
+ # distributed under the License is distributed on an "AS IS" BASIS,
18
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19
+ # See the License for the specific language governing permissions and
20
+ # limitations under the License.
21
+ #
22
+ stats_dtype:
23
+ time:
24
+ - u8
25
+ - seconds since 1970-01-01T00:00:00
26
+ - timestamp
27
+ index: [u2, '1', index]
28
+ tbl_id: [u1, '1', binning id]
29
+ saa: [u1, '1', saa-flag]
30
+ coad: [u1, '1', co-addings]
31
+ texp: [f4, ms, exposure time]
32
+ lat: [f4, degree, latitude]
33
+ lon: [f4, degree, longitude]
34
+ avg: [f4, '1', '$S - S_{ref}$']
35
+ unc: [f4, '1', '\u03c3($S - S_{ref}$)']
36
+ dark_offs: [f4, '1', dark-offset]
h5yaml/Data/h5_testing.yaml CHANGED
@@ -1,20 +1,30 @@
1
1
  # YAML
2
2
  #
3
- # Configuration file to test the implementation of classes H5Yaml and NcYaml
3
+ # This file is part of Python package: `h5yaml`
4
4
  #
5
- # This file is part of h5_yaml:
6
- # https://github.com/rmvanhees/h5_yaml.git
5
+ # https://github.com/rmvanhees/pyxarr.git
7
6
  #
8
- # Copyright (c) 2025 SRON
9
- # All Rights Reserved
7
+ # Copyright (c) 2025 - R.M. van Hees (SRON)
8
+ # All rights reserved.
10
9
  #
11
- # License: BSD-3-Clause
10
+ # Licensed under the Apache License, Version 2.0 (the "License");
11
+ # you may not use this file except in compliance with the License.
12
+ # You may obtain a copy of the License at
13
+ #
14
+ # http://www.apache.org/licenses/LICENSE-2.0
15
+ #
16
+ # Unless required by applicable law or agreed to in writing, software
17
+ # distributed under the License is distributed on an "AS IS" BASIS,
18
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19
+ # See the License for the specific language governing permissions and
20
+ # limitations under the License.
12
21
  #
13
22
  # Define groups
14
23
  groups:
15
24
  - group_00
16
25
  - group_01
17
26
  - group_02
27
+ - group_03
18
28
 
19
29
  # Define dimensions
20
30
  # Note dimensions with an attribute 'long_name' will also be generated as variable
@@ -28,9 +38,14 @@ dimensions:
28
38
  column:
29
39
  _dtype: u2
30
40
  _size: 640
41
+ _range: [0, 640, 1]
31
42
  row:
32
43
  _dtype: u2
33
44
  _size: 512
45
+ /group_03/viewport:
46
+ _dtype: str
47
+ _size: 5
48
+ _values: ['-50', '-20', '+0', '+20', '+50']
34
49
  time:
35
50
  _dtype: f8
36
51
  _size: 0
@@ -66,6 +81,7 @@ compounds:
66
81
 
67
82
  # Define variables
68
83
  variables:
84
+ # ---------- GROUP 00 ----------
69
85
  /group_00/detector_images:
70
86
  _dtype: u2
71
87
  _dims: [number_of_images, column, row]
@@ -75,6 +91,7 @@ variables:
75
91
  units: '1'
76
92
  valid_min: 0
77
93
  valid_max: 65534
94
+ # ---------- GROUP 01 ----------
78
95
  /group_01/detector_images:
79
96
  _dtype: u2
80
97
  _dims: [number_of_images, samples_per_image]
@@ -85,10 +102,21 @@ variables:
85
102
  units: '1'
86
103
  valid_min: 0
87
104
  valid_max: 65534
105
+ /group_01/contiguous_image:
106
+ _dtype: u2
107
+ _dims: [row, column]
108
+ _chunks: "contiguous"
109
+ _FillValue: 65535
110
+ long_name: Detector pixel values
111
+ comment: contiguous dataset
112
+ units: '1'
113
+ valid_min: 0
114
+ valid_max: 65534
88
115
  /group_01/stats:
89
116
  _dtype: stats_dtype
90
117
  _dims: [time]
91
118
  comment: detector map statistics
119
+ # ---------- GROUP 02 ----------
92
120
  /group_02/detector_images:
93
121
  _dtype: u2
94
122
  _dims: [number_of_images]
@@ -104,3 +132,100 @@ variables:
104
132
  _vlen: True
105
133
  _dims: [time]
106
134
  comment: detector map statistics (vlen)
135
+ # ---------- GROUP 03 ----------
136
+ /group_03/ds_01:
137
+ _dtype: u1
138
+ _dims: [number_of_images]
139
+ long_name: unsigned byte dataset
140
+ units: '1'
141
+ valid_min: 0
142
+ valid_max: 255
143
+ flag_values: [1, 2, 4, 8, 16]
144
+ /group_03/ds_02:
145
+ _dtype: i1
146
+ _dims: [number_of_images]
147
+ long_name: signed byte dataset
148
+ units: '1'
149
+ valid_min: -128
150
+ valid_max: 127
151
+ /group_03/ds_03:
152
+ _dtype: u2
153
+ _dims: [number_of_images]
154
+ long_name: unsigned short dataset
155
+ units: '1'
156
+ valid_min: 0
157
+ valid_max: 1024
158
+ /group_03/ds_04:
159
+ _dtype: i2
160
+ _dims: [number_of_images]
161
+ long_name: signed short dataset
162
+ units: '1'
163
+ valid_min: -1024
164
+ valid_max: 1024
165
+ /group_03/ds_05:
166
+ _dtype: u4
167
+ _dims: [number_of_images]
168
+ long_name: unsigned int dataset
169
+ units: '1'
170
+ valid_min: 0
171
+ valid_max: 1000000
172
+ /group_03/ds_06:
173
+ _dtype: i4
174
+ _dims: [number_of_images]
175
+ long_name: signed int dataset
176
+ units: '1'
177
+ valid_min: -1000000
178
+ valid_max: 1000000
179
+ /group_03/ds_07:
180
+ _dtype: u8
181
+ _dims: [number_of_images]
182
+ long_name: unsigned long dataset
183
+ units: '1'
184
+ valid_min: 0
185
+ valid_max: 999999
186
+ /group_03/ds_08:
187
+ _dtype: i8
188
+ _dims: [number_of_images]
189
+ long_name: signed long dataset
190
+ units: '1'
191
+ valid_min: -999999
192
+ valid_max: 999999
193
+ /group_03/ds_09:
194
+ _dtype: f2
195
+ _dims: [number_of_images]
196
+ long_name: half float dataset
197
+ units: '1'
198
+ valid_min: -999.9
199
+ valid_max: 999.9
200
+ /group_03/ds_10:
201
+ _dtype: f4
202
+ _dims: [number_of_images]
203
+ long_name: float dataset
204
+ units: '1'
205
+ valid_min: -999.9
206
+ valid_max: 999.9
207
+ /group_03/ds_11:
208
+ _dtype: f8
209
+ _dims: [number_of_images]
210
+ long_name: double dataset
211
+ units: '1'
212
+ valid_min: -999999.9
213
+ valid_max: 999999.9
214
+ /group_03/ds_12:
215
+ _dtype: complex64
216
+ _dims: [number_of_images]
217
+ long_name: complex64 dataset
218
+ valid_min: 0j
219
+ valid_max: 999999.9j
220
+ /group_03/ds_13:
221
+ _dtype: str
222
+ _dims: [number_of_images]
223
+ long_name: string dataset
224
+ /group_03/ds_14:
225
+ _dtype: str
226
+ _dims: [scalar]
227
+ long_name: scalar(str)
228
+ /group_03/ds_15:
229
+ _dtype: int
230
+ _dims: [scalar]
231
+ long_name: scalar(int)
h5yaml/Data/h5_unsupported.yaml ADDED
@@ -0,0 +1,56 @@
1
+ # YAML
2
+ #
3
+ # This file is part of Python package: `h5yaml`
4
+ #
5
+ # https://github.com/rmvanhees/pyxarr.git
6
+ #
7
+ # Copyright (c) 2025 - R.M. van Hees (SRON)
8
+ # All rights reserved.
9
+ #
10
+ # Licensed under the Apache License, Version 2.0 (the "License");
11
+ # you may not use this file except in compliance with the License.
12
+ # You may obtain a copy of the License at
13
+ #
14
+ # http://www.apache.org/licenses/LICENSE-2.0
15
+ #
16
+ # Unless required by applicable law or agreed to in writing, software
17
+ # distributed under the License is distributed on an "AS IS" BASIS,
18
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19
+ # See the License for the specific language governing permissions and
20
+ # limitations under the License.
21
+ #
22
+ # Define dimensions
23
+ # Note dimensions with an attribute 'long_name' will also be generated as variable
24
+ # Define groups
25
+ groups:
26
+ - group_00
27
+
28
+ dimensions:
29
+ number_of_images:
30
+ _dtype: u2
31
+ _size: 0
32
+ time:
33
+ _dtype: f8
34
+ _size: 0
35
+ _FillValue: -32767
36
+ long_name: Attitude sample time (seconds of day)
37
+ calendar: proleptic_gregorian
38
+ units: seconds since %Y-%m-%d %H:%M:%S
39
+ valid_min: 0
40
+ valid_max: 92400
41
+
42
+ # Define compound types
43
+ # - compound elements must have a data-type, and can have a unit and long_name
44
+ compounds:
45
+ - h5_compound.yaml
46
+ - h5_nocompound.yaml
47
+
48
+ # Define variables
49
+ variables:
50
+ ds_01:
51
+ _dtype: f8
52
+ _dims: [time, number_of_images]
53
+ long_name: double dataset
54
+ units: '1'
55
+ valid_min: -999999.9
56
+ valid_max: 999999.9
h5yaml/Data/nc_testing.yaml CHANGED
@@ -1,20 +1,30 @@
1
1
  # YAML
2
2
  #
3
- # Configuration file to test the implementation of classes H5Yaml and NcYaml
3
+ # This file is part of Python package: `h5yaml`
4
4
  #
5
- # This file is part of h5_yaml:
6
- # https://github.com/rmvanhees/h5_yaml.git
5
+ # https://github.com/rmvanhees/pyxarr.git
7
6
  #
8
- # Copyright (c) 2025 SRON
9
- # All Rights Reserved
7
+ # Copyright (c) 2025 - R.M. van Hees (SRON)
8
+ # All rights reserved.
10
9
  #
11
- # License: BSD-3-Clause
10
+ # Licensed under the Apache License, Version 2.0 (the "License");
11
+ # you may not use this file except in compliance with the License.
12
+ # You may obtain a copy of the License at
13
+ #
14
+ # http://www.apache.org/licenses/LICENSE-2.0
15
+ #
16
+ # Unless required by applicable law or agreed to in writing, software
17
+ # distributed under the License is distributed on an "AS IS" BASIS,
18
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19
+ # See the License for the specific language governing permissions and
20
+ # limitations under the License.
12
21
  #
13
22
  # Define groups
14
23
  groups:
15
24
  - group_00
16
25
  - group_01
17
26
  - group_02
27
+ - group_03
18
28
 
19
29
  # Define dimensions
20
30
  # Note dimensions with an attribute 'long_name' will also be generated as variable
@@ -28,9 +38,14 @@ dimensions:
28
38
  column:
29
39
  _dtype: u2
30
40
  _size: 640
41
+ _range: [0, 640, 1]
31
42
  row:
32
43
  _dtype: u2
33
44
  _size: 512
45
+ /group_03/viewport:
46
+ _dtype: str
47
+ _size: 5
48
+ _values: ['-50', '-20', '+0', '+20', '+50']
34
49
  time:
35
50
  _dtype: f8
36
51
  _size: 0
@@ -62,6 +77,7 @@ compounds:
62
77
 
63
78
  # Define variables
64
79
  variables:
80
+ # ---------- GROUP 00 ----------
65
81
  /group_00/detector_images:
66
82
  _dtype: u2
67
83
  _dims: [number_of_images, column, row]
@@ -71,6 +87,7 @@ variables:
71
87
  units: '1'
72
88
  valid_min: 0
73
89
  valid_max: 65534
90
+ # ---------- GROUP 01 ----------
74
91
  /group_01/detector_images:
75
92
  _dtype: u2
76
93
  _dims: [number_of_images, samples_per_image]
@@ -81,10 +98,21 @@ variables:
81
98
  units: '1'
82
99
  valid_min: 0
83
100
  valid_max: 65534
101
+ /group_01/contiguous_image:
102
+ _dtype: u2
103
+ _dims: [row, column]
104
+ _chunks: "contiguous"
105
+ _FillValue: 65535
106
+ long_name: Detector pixel values
107
+ comment: contiguous dataset
108
+ units: '1'
109
+ valid_min: 0
110
+ valid_max: 65534
84
111
  /group_01/stats:
85
112
  _dtype: stats_dtype
86
113
  _dims: [time]
87
114
  comment: detector map statistics
115
+ # ---------- GROUP 02 ----------
88
116
  /group_02/detector_images:
89
117
  _dtype: u2
90
118
  _dims: [number_of_images]
@@ -95,3 +123,100 @@ variables:
95
123
  units: '1'
96
124
  valid_min: 0
97
125
  valid_max: 65534
126
+ # ---------- GROUP 03 ----------
127
+ /group_03/ds_01:
128
+ _dtype: u1
129
+ _dims: [number_of_images]
130
+ long_name: unsigned byte dataset
131
+ units: '1'
132
+ valid_min: 0
133
+ valid_max: 255
134
+ flag_values: [1, 2, 4, 8, 16]
135
+ /group_03/ds_02:
136
+ _dtype: i1
137
+ _dims: [number_of_images]
138
+ long_name: signed byte dataset
139
+ units: '1'
140
+ valid_min: -128
141
+ valid_max: 127
142
+ /group_03/ds_03:
143
+ _dtype: u2
144
+ _dims: [number_of_images]
145
+ long_name: unsigned short dataset
146
+ units: '1'
147
+ valid_min: 0
148
+ valid_max: 1024
149
+ /group_03/ds_04:
150
+ _dtype: i2
151
+ _dims: [number_of_images]
152
+ long_name: signed short dataset
153
+ units: '1'
154
+ valid_min: -1024
155
+ valid_max: 1024
156
+ /group_03/ds_05:
157
+ _dtype: u4
158
+ _dims: [number_of_images]
159
+ long_name: unsigned int dataset
160
+ units: '1'
161
+ valid_min: 0
162
+ valid_max: 1000000
163
+ /group_03/ds_06:
164
+ _dtype: i4
165
+ _dims: [number_of_images]
166
+ long_name: signed int dataset
167
+ units: '1'
168
+ valid_min: -1000000
169
+ valid_max: 1000000
170
+ /group_03/ds_07:
171
+ _dtype: u8
172
+ _dims: [number_of_images]
173
+ long_name: unsigned long dataset
174
+ units: '1'
175
+ valid_min: 0
176
+ valid_max: 999999
177
+ /group_03/ds_08:
178
+ _dtype: i8
179
+ _dims: [number_of_images]
180
+ long_name: signed long dataset
181
+ units: '1'
182
+ valid_min: -999999
183
+ valid_max: 999999
184
+ #/group_03/ds_09:
185
+ # _dtype: f2
186
+ # _dims: [number_of_images]
187
+ # long_name: half float dataset
188
+ # units: '1'
189
+ # valid_min: -999.9
190
+ # valid_max: 999.9
191
+ /group_03/ds_10:
192
+ _dtype: f4
193
+ _dims: [number_of_images]
194
+ long_name: float dataset
195
+ units: '1'
196
+ valid_min: -999.9
197
+ valid_max: 999.9
198
+ /group_03/ds_11:
199
+ _dtype: f8
200
+ _dims: [number_of_images]
201
+ long_name: double dataset
202
+ units: '1'
203
+ valid_min: -999999.9
204
+ valid_max: 999999.9
205
+ #/group_03/ds_12:
206
+ # _dtype: complex64
207
+ # _dims: [number_of_images]
208
+ # long_name: complex64 dataset
209
+ # valid_min: 0j
210
+ # valid_max: 999999.9j
211
+ /group_03/ds_13:
212
+ _dtype: str
213
+ _dims: [number_of_images]
214
+ long_name: string dataset
215
+ /group_03/ds_14:
216
+ _dtype: str
217
+ _dims: [scalar]
218
+ long_name: scalar(str)
219
+ /group_03/ds_15:
220
+ _dtype: int
221
+ _dims: [scalar]
222
+ long_name: scalar(int)
h5yaml/__init__.py ADDED
@@ -0,0 +1,21 @@
1
+ #
2
+ # This file is part of Python package: `h5yaml`
3
+ #
4
+ # https://github.com/rmvanhees/h5_yaml.git
5
+ #
6
+ # Copyright (c) 2025 - R.M. van Hees (SRON)
7
+ # All rights reserved.
8
+ #
9
+ # Licensed under the Apache License, Version 2.0 (the "License");
10
+ # you may not use this file except in compliance with the License.
11
+ # You may obtain a copy of the License at
12
+ #
13
+ # http://www.apache.org/licenses/LICENSE-2.0
14
+ #
15
+ # Unless required by applicable law or agreed to in writing, software
16
+ # distributed under the License is distributed on an "AS IS" BASIS,
17
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
18
+ # See the License for the specific language governing permissions and
19
+ # limitations under the License.
20
+ #
21
+ """Necessary but empty file."""
h5yaml/conf_from_yaml.py CHANGED
@@ -1,11 +1,22 @@
1
1
  #
2
- # This file is part of h5_yaml:
3
- # https://github.com/rmvanhees/h5_yaml.git
2
+ # This file is part of Python package: `h5yaml`
4
3
  #
5
- # Copyright (c) 2025 SRON
6
- # All Rights Reserved
4
+ # https://github.com/rmvanhees/pyxarr.git
7
5
  #
8
- # License: BSD-3-Clause
6
+ # Copyright (c) 2025 - R.M. van Hees (SRON)
7
+ # All rights reserved.
8
+ #
9
+ # Licensed under the Apache License, Version 2.0 (the "License");
10
+ # you may not use this file except in compliance with the License.
11
+ # You may obtain a copy of the License at
12
+ #
13
+ # http://www.apache.org/licenses/LICENSE-2.0
14
+ #
15
+ # Unless required by applicable law or agreed to in writing, software
16
+ # distributed under the License is distributed on an "AS IS" BASIS,
17
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
18
+ # See the License for the specific language governing permissions and
19
+ # limitations under the License.
9
20
  #
10
21
  """Read settings from a YAML file."""
11
22
 
@@ -13,21 +24,18 @@ from __future__ import annotations
13
24
 
14
25
  __all__ = ["conf_from_yaml"]
15
26
 
16
- from typing import TYPE_CHECKING
27
+ from pathlib import Path
17
28
 
18
29
  import yaml
19
30
 
20
- if TYPE_CHECKING:
21
- from pathlib import Path
22
-
23
31
 
24
32
  # - main function -----------------------------------
25
- def conf_from_yaml(file_path: Path) -> dict:
33
+ def conf_from_yaml(file_path: Path | str) -> dict:
26
34
  """Read settings from a YAML file: `file_path`.
27
35
 
28
36
  Parameters
29
37
  ----------
30
- file_path : Path
38
+ file_path : Path | str
31
39
  full path of YAML file
32
40
 
33
41
  Returns
@@ -36,6 +44,9 @@ def conf_from_yaml(file_path: Path) -> dict:
36
44
  content of the configuration file
37
45
 
38
46
  """
47
+ if isinstance(file_path, str):
48
+ file_path = Path(str)
49
+
39
50
  if not file_path.is_file():
40
51
  raise FileNotFoundError(f"{file_path} not found")
41
52
 
h5yaml/lib/__init__.py ADDED
@@ -0,0 +1,21 @@
1
+ #
2
+ # This file is part of Python package: `h5yaml`
3
+ #
4
+ # https://github.com/rmvanhees/h5_yaml.git
5
+ #
6
+ # Copyright (c) 2025 - R.M. van Hees (SRON)
7
+ # All rights reserved.
8
+ #
9
+ # Licensed under the Apache License, Version 2.0 (the "License");
10
+ # you may not use this file except in compliance with the License.
11
+ # You may obtain a copy of the License at
12
+ #
13
+ # http://www.apache.org/licenses/LICENSE-2.0
14
+ #
15
+ # Unless required by applicable law or agreed to in writing, software
16
+ # distributed under the License is distributed on an "AS IS" BASIS,
17
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
18
+ # See the License for the specific language governing permissions and
19
+ # limitations under the License.
20
+ #
21
+ """Necessary but empty file."""
h5yaml/lib/adjust_attr.py ADDED
@@ -0,0 +1,79 @@
1
+ #
2
+ # This file is part of Python package: `h5yaml`
3
+ #
4
+ # https://github.com/rmvanhees/pyxarr.git
5
+ #
6
+ # Copyright (c) 2025 - R.M. van Hees (SRON)
7
+ # All rights reserved.
8
+ #
9
+ # Licensed under the Apache License, Version 2.0 (the "License");
10
+ # you may not use this file except in compliance with the License.
11
+ # You may obtain a copy of the License at
12
+ #
13
+ # http://www.apache.org/licenses/LICENSE-2.0
14
+ #
15
+ # Unless required by applicable law or agreed to in writing, software
16
+ # distributed under the License is distributed on an "AS IS" BASIS,
17
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
18
+ # See the License for the specific language governing permissions and
19
+ # limitations under the License.
20
+ #
21
+ """Convert values HDF5/netCDF4 attribute."""
22
+
23
+ from __future__ import annotations
24
+
25
+ __all__ = ["adjust_attr"]
26
+
27
+ import numpy as np
28
+
29
+
30
+ # - main function ------------------------------------
31
+ def adjust_attr(dtype: str, attr_key: str, attr_val: np.generic) -> np.generic:
32
+ """Return attribute converted to the same data type as its variable.
33
+
34
+ Parameters
35
+ ----------
36
+ dtype : str
37
+ numpy data-type of variable
38
+ attr_key : str
39
+ name of the attribute
40
+ attr_val : np.generic
41
+ original value of the attribute
42
+
43
+ Returns
44
+ -------
45
+ attr_val converted to dtype
46
+ """
47
+ if attr_key in ("valid_min", "valid_max", "valid_range"):
48
+ match dtype:
49
+ case "i1":
50
+ res = np.int8(attr_val)
51
+ case "i2":
52
+ res = np.int16(attr_val)
53
+ case "i4":
54
+ res = np.int32(attr_val)
55
+ case "i8":
56
+ res = np.int64(attr_val)
57
+ case "u1":
58
+ res = np.uint8(attr_val)
59
+ case "u2":
60
+ res = np.uint16(attr_val)
61
+ case "u4":
62
+ res = np.uint32(attr_val)
63
+ case "u8":
64
+ res = np.uint64(attr_val)
65
+ case "f2":
66
+ res = np.float16(attr_val)
67
+ case "f4":
68
+ res = np.float32(attr_val)
69
+ case "f8":
70
+ res = np.float64(attr_val)
71
+ case _:
72
+ res = attr_val
73
+
74
+ return res
75
+
76
+ if attr_key == "flag_values":
77
+ return np.array(attr_val, dtype="u1")
78
+
79
+ return attr_val
h5yaml/lib/chunksizes.py CHANGED
@@ -1,11 +1,22 @@
1
1
  #
2
- # This file is part of h5_yaml
3
- # https://github.com/rmvanhees/h5_yaml.git
2
+ # This file is part of Python package: `h5yaml`
4
3
  #
5
- # Copyright (c) 2025 SRON
6
- # All Rights Reserved
4
+ # https://github.com/rmvanhees/pyxarr.git
7
5
  #
8
- # License: BSD-3-Clause
6
+ # Copyright (c) 2025 - R.M. van Hees (SRON)
7
+ # All rights reserved.
8
+ #
9
+ # Licensed under the Apache License, Version 2.0 (the "License");
10
+ # you may not use this file except in compliance with the License.
11
+ # You may obtain a copy of the License at
12
+ #
13
+ # http://www.apache.org/licenses/LICENSE-2.0
14
+ #
15
+ # Unless required by applicable law or agreed to in writing, software
16
+ # distributed under the License is distributed on an "AS IS" BASIS,
17
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
18
+ # See the License for the specific language governing permissions and
19
+ # limitations under the License.
9
20
  #
10
21
  """Obtain chunksizes for HDF5 datasets."""
11
22