gwaslab 3.6.5__py3-none-any.whl → 3.6.7__py3-none-any.whl

gwaslab/{viz_plot_regionalplot.py → viz/viz_plot_regionalplot.py}

@@ -16,11 +16,12 @@ from mpl_toolkits.axes_grid1.inset_locator import inset_axes
 from mpl_toolkits.axes_grid1.inset_locator import mark_inset
 from adjustText import adjust_text
 from gtfparse import read_gtf
+
 from gwaslab.g_Log import Log
-from gwaslab.bd_common_data import get_chr_to_number
-from gwaslab.bd_common_data import get_number_to_chr
-from gwaslab.bd_common_data import get_recombination_rate
-from gwaslab.bd_common_data import get_gtf
+from gwaslab.bd.bd_common_data import get_chr_to_number
+from gwaslab.bd.bd_common_data import get_number_to_chr
+from gwaslab.bd.bd_common_data import get_recombination_rate
+from gwaslab.bd.bd_common_data import get_gtf
 
 def _plot_regional(
     sumstats,

gwaslab/{viz_plot_rg_heatmap.py → viz/viz_plot_rg_heatmap.py}

@@ -7,7 +7,7 @@ import matplotlib.patches as patches
 import matplotlib
 from gwaslab.g_Log import Log
 import scipy.stats as ss
-from gwaslab.viz_aux_save_figure import save_figure
+from gwaslab.viz.viz_aux_save_figure import save_figure
 
 #################################################################################################
 def convert_p_to_width(p,sig_level):

gwaslab/{viz_plot_scatter_with_reg.py → viz/viz_plot_scatter_with_reg.py}

@@ -8,15 +8,18 @@ import math
 import scipy.stats as ss
 from matplotlib.patches import Rectangle
 from adjustText import adjust_text
-from gwaslab.viz_aux_save_figure import save_figure
-from gwaslab.util_in_get_sig import getsig
-from gwaslab.util_in_get_sig import annogene
 from gwaslab.g_Log import Log
-from gwaslab.util_in_correct_winnerscurse import wc_correct
-from gwaslab.util_in_correct_winnerscurse import wc_correct_test
 from gwaslab.g_Sumstats import Sumstats
-from gwaslab.io_process_args import _merge_and_sync_dic
-from gwaslab.io_process_args import _extract_kwargs
+
+from gwaslab.util.util_in_get_sig import getsig
+from gwaslab.util.util_in_get_sig import annogene
+from gwaslab.util.util_in_correct_winnerscurse import wc_correct
+from gwaslab.util.util_in_correct_winnerscurse import wc_correct_test
+
+from gwaslab.io.io_process_args import _merge_and_sync_dic
+from gwaslab.io.io_process_args import _extract_kwargs
+
+from gwaslab.viz.viz_aux_save_figure import save_figure
 
 def scatter(df, 
             x, 

gwaslab/{viz_plot_stackedregional.py → viz/viz_plot_stackedregional.py}

@@ -1,6 +1,7 @@
 import pandas as pd
 import matplotlib.pyplot as plt
 import matplotlib.ticker as ticker
+import matplotlib.patches as patches
 import seaborn as sns
 import numpy as np
 import scipy as sp
@@ -14,32 +15,36 @@ from scipy import stats
 from mpl_toolkits.axes_grid1.inset_locator import inset_axes
 import gc as garbage_collect
 from adjustText import adjust_text
+
 from gwaslab.g_Log import Log
-from gwaslab.util_in_get_sig import getsig
-from gwaslab.util_in_get_sig import annogene
-from gwaslab.bd_common_data import get_chr_to_number
-from gwaslab.bd_common_data import get_number_to_chr
-from gwaslab.bd_common_data import get_recombination_rate
-from gwaslab.bd_common_data import get_gtf
-from gwaslab.viz_aux_reposition_text import adjust_text_position
-from gwaslab.viz_aux_chromatin import _plot_chromatin_state
-from gwaslab.viz_aux_quickfix import _quick_fix
-from gwaslab.viz_aux_quickfix import _get_largenumber
-from gwaslab.viz_aux_quickfix import _quick_add_tchrpos
-from gwaslab.viz_aux_quickfix import _quick_merge_sumstats
-from gwaslab.viz_aux_quickfix import _quick_assign_i
-from gwaslab.viz_aux_quickfix import _quick_assign_i_with_rank
-from gwaslab.viz_aux_quickfix import _quick_extract_snp_in_region
-from gwaslab.viz_aux_quickfix import _quick_assign_highlight_hue_pair
-from gwaslab.viz_aux_quickfix import _quick_assign_marker_relative_size
-from gwaslab.viz_aux_annotate_plot import annotate_pair
-from gwaslab.io_to_pickle import load_pickle
-from gwaslab.io_to_pickle import load_data_from_pickle
 from gwaslab.g_Sumstats import Sumstats
-from gwaslab.viz_aux_save_figure import save_figure
-from gwaslab.viz_plot_mqqplot import mqqplot
-from gwaslab.viz_plot_credible_sets import _plot_cs
-import matplotlib.patches as patches
+from gwaslab.util.util_in_get_sig import getsig
+from gwaslab.util.util_in_get_sig import annogene
+
+from gwaslab.bd.bd_common_data import get_chr_to_number
+from gwaslab.bd.bd_common_data import get_number_to_chr
+from gwaslab.bd.bd_common_data import get_recombination_rate
+from gwaslab.bd.bd_common_data import get_gtf
+
+from gwaslab.viz.viz_aux_reposition_text import adjust_text_position
+from gwaslab.viz.viz_aux_chromatin import _plot_chromatin_state
+from gwaslab.viz.viz_aux_quickfix import _quick_fix
+from gwaslab.viz.viz_aux_quickfix import _get_largenumber
+from gwaslab.viz.viz_aux_quickfix import _quick_add_tchrpos
+from gwaslab.viz.viz_aux_quickfix import _quick_merge_sumstats
+from gwaslab.viz.viz_aux_quickfix import _quick_assign_i
+from gwaslab.viz.viz_aux_quickfix import _quick_assign_i_with_rank
+from gwaslab.viz.viz_aux_quickfix import _quick_extract_snp_in_region
+from gwaslab.viz.viz_aux_quickfix import _quick_assign_highlight_hue_pair
+from gwaslab.viz.viz_aux_quickfix import _quick_assign_marker_relative_size
+from gwaslab.viz.viz_aux_annotate_plot import annotate_pair
+from gwaslab.viz.viz_aux_save_figure import save_figure
+from gwaslab.viz.viz_plot_mqqplot import mqqplot
+from gwaslab.viz.viz_plot_credible_sets import _plot_cs
+
+from gwaslab.io.io_to_pickle import load_pickle
+from gwaslab.io.io_to_pickle import load_data_from_pickle
+
 
 def plot_stacked_mqq(   objects,
                         vcfs=None,
@@ -54,6 +59,8 @@ def plot_stacked_mqq(   objects,
                         title_args=None,
                         #title_box = None,
                         gtf=None,
+                        mqq_height=1,
+                        cs_height=0.5,
                         gene_track_height=0.5,
                         fig_args=None,
                         region_hspace=0.07,
@@ -75,8 +82,9 @@ def plot_stacked_mqq(   objects,
     
     log.write("Start to create stacked mqq plot by iteratively calling plot_mqq:",verbose=verbose)
     # load sumstats
-    
+    log.write(" -Stacked plot mode:{}...".format(mode),verbose=verbose)
     ##########################################################################################################################################
+    # a list of modes for each panel
     if pm is None:
         pm=[]
 
@@ -94,13 +102,14 @@ def plot_stacked_mqq(   objects,
             else:
                 sumstats_list.append(each_object)
                 pm.append("m")
-    
+
+    log.write(" -Panel mode:{}...".format(pm),verbose=verbose)
+    ##########################################################################################################################################
+
     if common_ylabel==True:
         rr_ylabel=False
     else:
         rr_ylabel=True
-
-    log.write(" -Panel mode:{}...".format(pm),verbose=verbose)
     
     if fig_args is None:
         fig_args = {"dpi":200}
@@ -146,16 +155,36 @@ def plot_stacked_mqq(   objects,
     # figsize : Width, height in inches
 
     if mode=="r":
+    ##########################################################################################################################################   
+        if not (len(vcfs)==1 or len(vcfs)==len(sumstats_list)):
+            raise ValueError("Please make sure VCFs match Objects!")
+    
         if len(vcfs)==1:
             vcfs = vcfs *len(sumstats_list)
+    ##########################################################################################################################################    
+        height_ratios=[]
+        for index, i in enumerate(pm):
+            if i =="m":
+                height_ratios.append(mqq_height)
+            elif i=="pip":
+                height_ratios.append(cs_height)
+                vcfs[index] = "NA"
+
+        log.write(" -VCFs:{}...".format(vcfs),verbose=verbose)
+
+        # n: sumstats
+        # +1 : gene track
         n_plot = len(sumstats_list)
         n_plot_plus_gene_track = n_plot + 1
-
+        
         if len(region_chromatin_files)>0 and mode=="r":
-            height_ratios = [1 for i in range(n_plot_plus_gene_track-1)]+[region_chromatin_height]+[gene_track_height]
+            #height_ratios = [1 for i in range(n_plot_plus_gene_track-1)]+[region_chromatin_height]+[gene_track_height]
+            height_ratios += [region_chromatin_height]+[gene_track_height]
+            # +1 : region_chromatin_files
             n_plot_plus_gene_track +=1
         else:
-            height_ratios = [1 for i in range(n_plot_plus_gene_track-1)]+[gene_track_height]
+            #height_ratios = [1 for i in range(n_plot_plus_gene_track-1)]+[gene_track_height]
+            height_ratios += [gene_track_height]
         
         if "figsize" not in fig_args.keys():
             fig_args["figsize"] = [16,subplot_height*n_plot_plus_gene_track]
@@ -163,6 +192,7 @@ def plot_stacked_mqq(   objects,
         fig, axes = plt.subplots(n_plot_plus_gene_track, 1, sharex=True, 
                              gridspec_kw={'height_ratios': height_ratios},
                              **fig_args)
+        
         plt.subplots_adjust(hspace=region_hspace)
     elif mode=="m":
         n_plot = len(sumstats_list)
@@ -178,11 +208,11 @@ def plot_stacked_mqq(   objects,
         if "figsize" not in fig_args.keys():
             fig_args["figsize"] = [10,subplot_height*n_plot]
         fig, axes = plt.subplots(n_plot, 2, sharex=True, 
-                             gridspec_kw={'height_ratios': [1 for i in range(n_plot-1)],
+                             gridspec_kw={'height_ratios': [1 for i in range(n_plot)],
                                           'width_ratios':[mqqratio,1]},
                                           **fig_args)
         plt.subplots_adjust(hspace=region_hspace)
-    
+        vcfs = [None for i in range(n_plot)]
     if region_lead_grids is None:
         region_lead_grids = [i for i in range(len(axes))]
     ##########################################################################################################################################
@@ -325,6 +355,10 @@ def plot_stacked_mqq(   objects,
     #else:
     if title_pos is None:
         title_pos = [0.01,0.97]
+
+    if mode=="mqq":
+        axes = [axes[i,0] for i in range(len(objects))]
+
     if titles is not None:
         for index,title in enumerate(titles):
             axes[index].text(title_pos[0], title_pos[1] , title, transform=axes[index].transAxes,ha="left", va='top',zorder=999999, **title_args)

gwaslab/{viz_plot_trumpetplot.py → viz/viz_plot_trumpetplot.py}

@@ -9,16 +9,18 @@ from matplotlib.collections import LineCollection
 import matplotlib.colors as mc
 import matplotlib
 from adjustText import adjust_text
-from gwaslab.util_in_get_sig import annogene
-from gwaslab.viz_aux_annotate_plot import annotate_single
-from gwaslab.viz_aux_reposition_text import adjust_text_position
-from gwaslab.viz_aux_save_figure import save_figure
-from gwaslab.viz_plot_mqqplot import _process_highlight
 from gwaslab.g_Log import Log
-from gwaslab.util_in_calculate_power import get_beta
-from gwaslab.util_in_calculate_power import get_power
-from gwaslab.util_in_calculate_power import get_beta_binary
-from gwaslab.util_in_fill_data import filldata
+
+from gwaslab.viz.viz_aux_annotate_plot import annotate_single
+from gwaslab.viz.viz_aux_reposition_text import adjust_text_position
+from gwaslab.viz.viz_aux_save_figure import save_figure
+from gwaslab.viz.viz_plot_mqqplot import _process_highlight
+
+from gwaslab.util.util_in_get_sig import annogene
+from gwaslab.util.util_in_calculate_power import get_beta
+from gwaslab.util.util_in_calculate_power import get_power
+from gwaslab.util.util_in_calculate_power import get_beta_binary
+from gwaslab.util.util_in_fill_data import filldata
 
 def plottrumpet(mysumstats,
                 snpid="SNPID",

{gwaslab-3.6.5.dist-info → gwaslab-3.6.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: gwaslab
-Version: 3.6.5
+Version: 3.6.7
 Summary: A collection of handy tools for GWAS SumStats
 Author-email: Yunye <gwaslab@gmail.com>
 Project-URL: Homepage, https://cloufield.github.io/gwaslab/

gwaslab-3.6.7.dist-info/RECORD

@@ -0,0 +1,123 @@
+gwaslab/__init__.py,sha256=tr8AGz-BqvOc5V0aUHNC-xW--LIAiUXrFo8HTR4SI9k,2861
+gwaslab/cache_manager.py,sha256=HOTnSkCOyGEPLRl90WT8D_6pAdI8d8AzenMIDGuCeWc,28113
+gwaslab/g_Log.py,sha256=C3Zv-_6c3C9ms8bgQ-ytplz22sjk7euqXYkWr9zNeAs,1573
+gwaslab/g_Phenotypes.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+gwaslab/g_Sumstats.py,sha256=7gRp2DIBxcBVYC6H5_4_3lde-VkGSKCiFCHOM3vLE1Q,45366
+gwaslab/g_SumstatsMulti.py,sha256=CDnYMK0L8bV-LNOwO4h9yJahOVHR-sPAxZMNaeKFb3U,15098
+gwaslab/g_SumstatsPair.py,sha256=3-4aFh6pMZ4phcqHCCfyFPC3ySuck43wuTsfLG-ZAyY,13470
+gwaslab/g_SumstatsSet.py,sha256=xuGLpsHyhY2SjMVsFHGdL3iCa-Leb_3bu_R8totkzBY,30180
+gwaslab/g_SumstatsT.py,sha256=6_k9_Jy-gLXikkAPuFRw6hhsad4nddsN2NE2J82EIw8,2151
+gwaslab/g_Sumstats_polars.py,sha256=xbNLVdIfSvq8r_rnSPMM9OPxD0LsJ16sBliQOJYqIxg,8865
+gwaslab/g_Sumstats_summary.py,sha256=FECvvFXJVKaCX5dggBvvk9YvJ6AbdbcLfjltysX7wEE,6380
+gwaslab/g_headers.py,sha256=B0bTVqzf2pdUwAX1U8MoYDO7nQEKAtgVnn-9bVXsJGE,6766
+gwaslab/g_meta.py,sha256=pXtSsQfFPv2UJmOxKMmLtcsp_Ku_H73YP7PnlfMd0sg,6472
+gwaslab/g_meta_update.py,sha256=W1m6mh5jNUeZAW4T6F6kKZ10gE4l8YieoEC2mAfkzGg,2495
+gwaslab/g_vchange_status.py,sha256=lc3G65-QBV5k5yK-ySGIxiUT0hMBmESLhMKYncwjSwU,1986
+gwaslab/g_vchange_status_polars.py,sha256=kxyGQCur0ibVFBCyZghA-XNf_kLDXKK-l7VC-Om2IdA,1839
+gwaslab/g_version.py,sha256=FfHZxV9uv1mOWW5g797u-_H31D7enHR2OVkcHrJA16I,1964
+gwaslab/hm_harmonize_sumstats.py,sha256=WkUGNxftEGF5NAJktbEqQfniwcoD6zWHd-4bGrBxOtM,84472
+gwaslab/run_script.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+gwaslab/bd/bd_common_data.py,sha256=mlw977K-ihKf7TQEn6FwUCyJ2vcnq6KIhrX6J3bRMVA,14226
+gwaslab/bd/bd_config.py,sha256=t3YeDMGRSP8k3lw4rHHilIM4jAXSzFOF9DtuuIbpDS8,924
+gwaslab/bd/bd_download.py,sha256=aV5Bxoi4ircoX7-nJXZbGAnDZh984NAg12hU94DfZVY,15666
+gwaslab/bd/bd_get_hapmap3.py,sha256=XW5fTEA4xPIgGUdp3x3gY7fiTqL8lHxA6ZGTnUASzTA,5660
+gwaslab/bd/bd_path_manager.py,sha256=uUFsEBeOOM-5hwPxKUvAhdmvta4OBx2bADmF3LpMVeY,4069
+gwaslab/data/formatbook.json,sha256=0jH6rWM0C4YcBy3dRfGxAysei46KYDaidwsDGsGSkZQ,64623
+gwaslab/data/reference.json,sha256=oaE_HLFeYuEpcZ_rCGY3GwiAJWsDxRtjJOAc188WG28,12620
+gwaslab/data/chrx_par/chrx_par_hg19.bed.gz,sha256=LocZg_ozhZjQiIpgWCO4EYCW9xgkEKpRy1m-YdIpzQs,83
+gwaslab/data/chrx_par/chrx_par_hg38.bed.gz,sha256=VFW11MnQVC-Iu-ZGvUDcEhVpb-HVRsVTg-W-GNJyxP4,82
+gwaslab/data/hapmap3_SNPs/hapmap3_db150_hg19.snplist.gz,sha256=qD9RsC5S2h6l-OdpW09DWXHIi2kcPebctMnhxt8mzfU,10282886
+gwaslab/data/hapmap3_SNPs/hapmap3_db151_hg38.snplist.gz,sha256=Y8ZT2FIAhbhlgCJdE9qQVAiwnV_fcsPt72usBa7RSBM,10225828
+gwaslab/data/high_ld/high_ld_hla_hg19.bed.gz,sha256=R7IkssKu0L4WwkU9SrS84xCMdrkkKL0gnTNO_OKbG0Y,219
+gwaslab/data/high_ld/high_ld_hla_hg38.bed.gz,sha256=76CIU0pibDJ72Y6UY-TbIKE9gEPwTELAaIbCXyjm80Q,470
+gwaslab/extension/ldsc/ldsc_irwls.py,sha256=4JOiP7FR1FAAOR7sy51vKxJoRwpgCmY5DWKG2NgOEa4,6157
+gwaslab/extension/ldsc/ldsc_jackknife.py,sha256=XrWHoKS_Xn9StG1I83S2vUMTertsb-GH-_gOFYUhLeU,17715
+gwaslab/extension/ldsc/ldsc_ldscore.py,sha256=ZOxMvV3PhZzLsTmkKQqjabk_9PdrCTtPhbrdrpGmRAk,14580
+gwaslab/extension/ldsc/ldsc_parse.py,sha256=MBnfgcWlV4oHp9MoDRh1mpilaHhAR15Af77hMFn4-5k,10564
+gwaslab/extension/ldsc/ldsc_regressions.py,sha256=f9aGYlHtwA5XF5gEHVkiRt8YVbxQGqM-jp7_ujCE8XY,30108
+gwaslab/extension/ldsc/ldsc_sumstats.py,sha256=02KporMMVSGf8hA_9QOx1MVUIQb-pzKL20txd6S_Al8,26275
+gwaslab/extension/prscs/prscs_gigrnd.py,sha256=oKv3lN0AJjg-Vm39_qMzVZ-iux5rVWBUU1meJv4iEs8,2872
+gwaslab/extension/prscs/prscs_mcmc_gtb.py,sha256=iCHB1E4cZkVOK7jbSctAw4Lekj7kpnvOD_sOHqLaE3U,4623
+gwaslab/extension/prscs/prscs_parse_genet.py,sha256=N7UmyvdO--yTKvbjMNQCVucRIs4PbRGf93maGkh8PP4,3137
+gwaslab/hm/hm_casting.py,sha256=_ctMnStZiUeP_a_m1PeHLJsR7kO5voxFOEtydpimm9I,14192
+gwaslab/hm/hm_casting_polars.py,sha256=sm2uGe8Ui101j9bWjjHtUOodBGzsk04akFSLB7CpUGY,11454
+gwaslab/hm/hm_harmonize_sumstats.py,sha256=biYNBsdfrtSD6VJC3TlU6V-E-s3Z53jbd8FAun_Xljg,84876
+gwaslab/hm/hm_rsid_to_chrpos.py,sha256=ODWREO0jPN0RAfNzL5fRzSRANfhiksOvUVPuEsFZQqA,6552
+gwaslab/io/io_load_ld.py,sha256=OzuX6kXZB0fUzX4ft52e8qEFTssnK7KFRWGZvB25d34,21945
+gwaslab/io/io_preformat_input.py,sha256=JENQmaXjqcDcb4-FrTNbZlFEucJ5fagXb5U6fiimW2U,29976
+gwaslab/io/io_preformat_input_polars.py,sha256=e8JC1qoKa8zN8mBiQwynRfe_SP01hNwI0SJEkpH6CMY,24799
+gwaslab/io/io_process_args.py,sha256=TIv0DyaVEcHnLBGdOD52GBZiO6nAQJycAmmVdEYPmRE,1918
+gwaslab/io/io_read_ldsc.py,sha256=9tV4AfQZmCAyiNSR9uALmXWOytWhBdT0pfMAY5Mx_QQ,13407
+gwaslab/io/io_read_pipcs.py,sha256=MrZTStNyLbWnPm5VB5DuKEadQ4Q2pbD0MEXjuaGoLDg,2965
+gwaslab/io/io_read_tabular.py,sha256=CVdHGdKnqQyYTyy0inuJFCvludO05z_5Em831q-Cv-8,2386
+gwaslab/io/io_to_formats.py,sha256=v5uhrhwcjZjja2CIWYwfgq1701tH5qasEEmNMbPSmwg,32898
+gwaslab/io/io_to_pickle.py,sha256=D4PAXnjRzBHIPU2WE72rUY7W7zc8zr-8b0eMzlNRanU,2198
+gwaslab/qc/qc_build.py,sha256=oeJqV-zbn-9FZ7SsmT4DPuYTt_IIeXw0XtmEkSzN5qA,2145
+gwaslab/qc/qc_check_datatype.py,sha256=XuL4sg-OkdIiGaHg98JHZems0Uo-OyF5DlUTyE9gUd4,4580
+gwaslab/qc/qc_check_datatype_polars.py,sha256=jpjzMGYqy6VmDSaRiNzXJAt2DEWOinO40wEiToqNiac,4232
+gwaslab/qc/qc_fix_sumstats.py,sha256=uTJEZ2QhO9ECoHxYJd048FK-36-omM-jWchzM5-imLA,100517
+gwaslab/qc/qc_fix_sumstats_polars.py,sha256=f-cETfxdnX4mfIgXQo2_NRzc6rQJFxsPOmDiNvufAjg,9643
+gwaslab/util/util_abf_finemapping.py,sha256=eFeAkz6EkhEKRALGF68286pLvmHjt4pEc0reOdIDPbA,3064
+gwaslab/util/util_ex_calculate_ldmatrix.py,sha256=sBqKxtOpKZoEq5uPbSBKUZoLLRD2e_qYOxeGE-CbyBY,17112
+gwaslab/util/util_ex_calculate_prs.py,sha256=CTigH6C1SRcSPNAIaaaclLQ3oqff10dVqru1WOQi5NA,9452
+gwaslab/util/util_ex_gwascatalog.py,sha256=RZ_qIsfjONUbF3AGMp-0feTBubOEEZUufYGdvv0Sk7g,9211
+gwaslab/util/util_ex_infer_ancestry.py,sha256=AXLEhuJUBT6XIYjADB-envFRGIZ-misnegGdtK8SsFc,2192
+gwaslab/util/util_ex_ldproxyfinder.py,sha256=8E4g82gCmolAvrg52urNMJX11MZMwOAPGQaZ4cfggiU,16918
+gwaslab/util/util_ex_ldsc.py,sha256=ss1QlwH7duLuVx_Ckb9mDbyz2neK8tv0WefUGCqzZUc,21685
+gwaslab/util/util_ex_match_ldmatrix.py,sha256=uVfHKxWQRtUQ0lUkt1o2LtZPSd3fh1yQ1rElFa4FDao,17525
+gwaslab/util/util_ex_phewwas.py,sha256=vNC23DIQ-dvawLhqjoP9h8ai_pxUuGdN1HlWOChDqeU,5529
+gwaslab/util/util_ex_plink_filter.py,sha256=pK1Yxtv9-J4rMOdVAG7VU9PktvI6-y4FxBiVEH0QuRs,1673
+gwaslab/util/util_ex_process_h5.py,sha256=LqfQKBjXnbPSRUVJy9hhRhuoS5wG93yoIguiFDZN1A4,2837
+gwaslab/util/util_ex_process_ref.py,sha256=qtDRxJT0O2NgW4fd6VkRMxIHhSdzhSwz6bfa4iLQvcc,17132
+gwaslab/util/util_ex_run_2samplemr.py,sha256=844ffpSAHwWH6h1VxmcWccGp-Hg3m3EcrZdaCyC8HIQ,11197
+gwaslab/util/util_ex_run_ccgwas.py,sha256=7xUE-EKM4h-gWkVuX04M2yvQOVB4eqrFJ8ACMnahL-M,5975
+gwaslab/util/util_ex_run_clumping.py,sha256=TFh5EdhmDj_QhXys7mUNk-qeJHWOnAZLjc8zaMiwU-E,8516
+gwaslab/util/util_ex_run_coloc.py,sha256=64GVCi7bheoF9-I5zRcB9eLQb0a4AO94V2ls3zouqQs,6574
+gwaslab/util/util_ex_run_hyprcoloc.py,sha256=yIvGnG-h7jIABAYNS9u0qFNAtTKoCyXa6FRRsS1Lfiw,4738
+gwaslab/util/util_ex_run_magma.py,sha256=Hpon65ax15bZAs2h4DCG_3pZKcSjQWw-FIUrfC_2zpc,2582
+gwaslab/util/util_ex_run_mesusie.py,sha256=kVSAYtYXznLM1V8FyPfMKjHMMoe2X5Hfn8p_OspWMyg,5542
+gwaslab/util/util_ex_run_mtag.py,sha256=UEGBKHTYm6JGMTiQ7k2rRxH2WjCDho3joPojlfYg5QA,3919
+gwaslab/util/util_ex_run_prscs.py,sha256=DJu-tIX6gQcdsZFcqESNM2NN0gO5vfhGBzwOgHOkrQc,3444
+gwaslab/util/util_ex_run_scdrs.py,sha256=Oxjx5eTyfAXqv0-V2GrYJrm-loYaHJ_zY0U4Ictb3tk,3135
+gwaslab/util/util_ex_run_susie.py,sha256=Wp7aH8xSQb4mWmvMSYIEsBUInNwZhkxoxEbjY51PEl4,6847
+gwaslab/util/util_in_calculate_gc.py,sha256=MWOXVzJv7SZx4i2_ncRiqsiEOADc7EfghaUzgGy4jaE,2219
+gwaslab/util/util_in_calculate_power.py,sha256=JfHJFg3tNF0f4NHgWlzVW2mSxCiP07mAHIyEfVfxTak,10360
+gwaslab/util/util_in_convert_h2.py,sha256=a8Cbudt3xn9WP2bPc-7ysuowB-LYub8j8GeDXl7Lk7Q,6483
+gwaslab/util/util_in_correct_winnerscurse.py,sha256=Gp--yAQ8MMzdkWIvXP9C1BHVjZc-YzqHfYWhAj19w9w,2110
+gwaslab/util/util_in_estimate_ess.py,sha256=QDOQ5vXfHtVkUEqX-TscsC831-FMTtGXXiHo1YxSFzU,1009
+gwaslab/util/util_in_fill_data.py,sha256=fk1u_bWvNnKtc7wxNTjYnvMljbBiMxV05VZP31yKp98,16598
+gwaslab/util/util_in_filter_value.py,sha256=IhRsRPVgaZWlLWfYMmSU3sHnXqmysN6-oC1yCb1HMHc,26629
+gwaslab/util/util_in_get_density.py,sha256=kpKXH69acMkeYVG5vs-VbJC3COhmuLBfYco-wuOxgjc,3934
+gwaslab/util/util_in_get_sig.py,sha256=GpwBmJhTvTUihy9b6LxkHZjApoQh-Ih0zjuiYQJh1Sw,42488
+gwaslab/util/util_in_merge.py,sha256=KB5VKRTUUZ1XGYUxgCP_l3cWYanjthMdwiZ_DincCZQ,2020
+gwaslab/util/util_in_meta.py,sha256=1dgzp-9TXNk100tL2nbv3Ag1f39Wz_zwSVv6fsO0-0M,18686
+gwaslab/util/util_in_meta_polars.py,sha256=MfMy4GFCRkwekeu-rlS2IGNJGZ78P6G09AqBGVHBgD4,8390
+gwaslab/util/util_in_snphwe.py,sha256=-KpIDx6vn_nah6H55IkV2OyjXQVXV13XyBL069WE1wM,1751
+gwaslab/viz/viz_aux_annotate_plot.py,sha256=cIT8trVbrXjG7wDrJF5P6PLzrTpS-xXgcEHNapk6Of0,25700
+gwaslab/viz/viz_aux_chromatin.py,sha256=aWZaXOSvGyZY7wQcoFDaqHRYCSHZbi_K4Q70HruN9ts,4125
+gwaslab/viz/viz_aux_property.py,sha256=UIaivghnLXYpTwkKnXRK0F28Jbn9L6OaICk3K73WZaU,33
+gwaslab/viz/viz_aux_quickfix.py,sha256=6xgJYHBEz6iTRkuIAS1e28PQJH1eIViBCOMvczxI-BQ,18698
+gwaslab/viz/viz_aux_reposition_text.py,sha256=iRIP-Rkltlei068HekJcVubiqPrunBqvAoSQ1eHk04M,4304
+gwaslab/viz/viz_aux_save_figure.py,sha256=HwIRDMYpeXfkBgb7mqzLN7OVPMz163U-ZVOlQJABzeg,2811
+gwaslab/viz/viz_plot_compare_af.py,sha256=pnL6pEQOSXZ1Zm2UTX-TdvTYSFD9zSY2vaJZSo4Ry_w,5348
+gwaslab/viz/viz_plot_compare_effect.py,sha256=KF0Ug4OwVwfl205Z5nRqGwXBLceuwJXYXj6378sT1Sg,69629
+gwaslab/viz/viz_plot_credible_sets.py,sha256=CjTtO5Dk2R-_GpZ0KN2NW0bN-EDga1OCjt9U8zDiTcw,5864
+gwaslab/viz/viz_plot_effect.py,sha256=quWnT_WwERt61s0iVpnznQWgw8a5S3LeVkMuWNi6iEc,8932
+gwaslab/viz/viz_plot_forestplot.py,sha256=xgOnefh737CgdQxu5naVyRNBX1NQXPFKzf51fbh6afs,6771
+gwaslab/viz/viz_plot_miamiplot.py,sha256=nzPqP8HD2RElrFFP0OtnsYoAEjVpkfcvkRZNul6pJPg,31318
+gwaslab/viz/viz_plot_miamiplot2.py,sha256=7Ixar822FLGEe8Jo2y54cOfcBC_AxQnwvbM7qth_Juw,18100
+gwaslab/viz/viz_plot_mqqplot.py,sha256=lO4sdrnmHb6b3jHOedG_OJy7ju8GbitEHVQo5Czqaag,71429
+gwaslab/viz/viz_plot_phe_heatmap.py,sha256=wUv3x7x2kyQWUfIrRiyxlAwILHbg3L4V-tMMvji8VQI,9589
+gwaslab/viz/viz_plot_qqplot.py,sha256=lLwzJ1DhnrE0gejt4bFOpAbIcY9jBdGOuHNsLcofglI,7494
+gwaslab/viz/viz_plot_regional2.py,sha256=p-A1N-18ENo0FSwTW6rJlCacEeHJFW7dVwuQ91Ozv-8,43160
+gwaslab/viz/viz_plot_regionalplot.py,sha256=UZSeXHfQlGWAYW_tMt00lZt8_vhiB6QcVLvMeiHBf_Q,37996
+gwaslab/viz/viz_plot_rg_heatmap.py,sha256=AvVAlOOAwhqGWCses7MfdIXLVQSIA2SFE6bd7K1NaLw,13865
+gwaslab/viz/viz_plot_scatter_with_reg.py,sha256=0cpE6ui7yuJ1lhoLu_klac2OSzd5QDx6V51fyplB3GI,8366
+gwaslab/viz/viz_plot_stackedregional.py,sha256=bgVQir_Wj3TxB3o7NJFf7b8HETlWjppgfwLsbUyr3oo,20668
+gwaslab/viz/viz_plot_trumpetplot.py,sha256=foc0VTYsp1O_sIHa5abuBMo_8Zhr27-rfgvsLeapLRY,42723
+gwaslab-3.6.7.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+gwaslab-3.6.7.dist-info/licenses/LICENSE_before_v3.4.39,sha256=GhLOU_1UDEKeOacYhsRN_m9u-eIuVTazSndZPeNcTZA,1066
+gwaslab-3.6.7.dist-info/METADATA,sha256=O7b6UoB81quv8g6dlju1Vs966O1EXgoRnRwV5cuD2co,7073
+gwaslab-3.6.7.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+gwaslab-3.6.7.dist-info/top_level.txt,sha256=PyY6hWtrALpv2MAN3kjkIAzJNmmBTH5a2risz9KwH08,8
+gwaslab-3.6.7.dist-info/RECORD,,

gwaslab/bd_config.py

@@ -1,18 +0,0 @@
-from os import path
-class Options_dic:
-    def __init__(self,path_dic):
-        self.paths = path_dic
-        self.default = path_dic.copy()
-    def set_option(self,key,path):
-        self.paths[key] = path
-    def reset_option(self):
-        self.paths = self.default.copy()
-
-default_dic={
-    "config": path.dirname(__file__) + "/data/config.json",
-    "reference": path.dirname(__file__) + "/data/reference.json",
-    "formatbook": path.dirname(__file__) + "/data/formatbook.json",
-    "data_directory": path.expanduser('~') + "/.gwaslab/"
-}
-
-options = Options_dic(default_dic)

gwaslab-3.6.5.dist-info/RECORD

@@ -1,120 +0,0 @@
-gwaslab/__init__.py,sha256=Lpa15i924wRu1jZ9_B2Tz5724FQkdb9O5Wg3tQPWR68,2683
-gwaslab/bd_common_data.py,sha256=jqkdKib-tc8RKyYMPy8z2KF3YwCWIr-6STMCi4xR7KY,13899
-gwaslab/bd_config.py,sha256=TP-r-DPhJD3XnRYZbw9bQHXaDIkiRgK8bG9HCt-UaLc,580
-gwaslab/bd_download.py,sha256=cDDk2C5IvjeAzvPvVYGTkI4Ss33DUtEDjGo8eAbQRvY,15663
-gwaslab/bd_get_hapmap3.py,sha256=1y_mt3Sj-D6Fm4NvVAYJKfE-BPaKPI-8wX93OkmxYbE,5402
-gwaslab/cache_manager.py,sha256=HOTnSkCOyGEPLRl90WT8D_6pAdI8d8AzenMIDGuCeWc,28113
-gwaslab/g_Log.py,sha256=C3Zv-_6c3C9ms8bgQ-ytplz22sjk7euqXYkWr9zNeAs,1573
-gwaslab/g_Phenotypes.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-gwaslab/g_Sumstats.py,sha256=BKHF4YWPXZBW9XXU9KKkvkhInXZYducvDdC8q7kstbI,43930
-gwaslab/g_SumstatsMulti.py,sha256=kYlbmvq3_PLnr4Car6DV5RIItmvCvznfUAjlYguu-2o,14016
-gwaslab/g_SumstatsPair.py,sha256=PmVPGU32degDuU5RDG9igyT1sFAbEDh6alrRulUphyk,13181
-gwaslab/g_SumstatsSet.py,sha256=AiTISWPfmu8NTGa8j9Yuts8DNw1pEUENYyPoS0HXp5I,29866
-gwaslab/g_SumstatsT.py,sha256=u_DighLMnMxwTLnqm-B58pA0G6WXRj6pudPyKMVKjSU,2133
-gwaslab/g_Sumstats_polars.py,sha256=F9d8y-6SJLRibrZrvWtwE2XpxZdG3A9DqqTT8TW4sS0,8528
-gwaslab/g_Sumstats_summary.py,sha256=FECvvFXJVKaCX5dggBvvk9YvJ6AbdbcLfjltysX7wEE,6380
-gwaslab/g_headers.py,sha256=B0bTVqzf2pdUwAX1U8MoYDO7nQEKAtgVnn-9bVXsJGE,6766
-gwaslab/g_meta.py,sha256=pXtSsQfFPv2UJmOxKMmLtcsp_Ku_H73YP7PnlfMd0sg,6472
-gwaslab/g_meta_update.py,sha256=dWgz4kcq9bvsXycCjfhoYtcJHlEP4HRdYoQ8KFqMyTQ,2490
-gwaslab/g_vchange_status.py,sha256=w3zsYYOcCaI3PTeboonvkQjudzUAfVIgATzRdiPViZs,1939
-gwaslab/g_vchange_status_polars.py,sha256=kxyGQCur0ibVFBCyZghA-XNf_kLDXKK-l7VC-Om2IdA,1839
-gwaslab/g_version.py,sha256=L9As6MEHYqrYQ9btjVuz0_cWbUsC8ODJU-zYh4YIZ_I,1964
-gwaslab/hm_casting.py,sha256=xoq1E4Tp5VC4aLWfq9-_AfiQzb1WZAHrnZG33W4sCOE,14178
-gwaslab/hm_casting_polars.py,sha256=CAPfCucj-ARtwP80EuHc9q2gLdj8TL_XQ7_sEC9LxA0,11440
-gwaslab/hm_harmonize_sumstats.py,sha256=2MeWnWmMHpLWjUMTVqExpg_3mE1VIaBsh6Mz3ffJCMc,84761
-gwaslab/hm_rsid_to_chrpos.py,sha256=ODWREO0jPN0RAfNzL5fRzSRANfhiksOvUVPuEsFZQqA,6552
-gwaslab/io_load_ld.py,sha256=pJemMmHn5GrEbIloqGPX3tBStjkA6DVrAoerGOUBbqc,21827
-gwaslab/io_preformat_input.py,sha256=jIacIVymCfHVBlonUCFRmUJobLcxMWn2w_vWqXjESPg,26538
-gwaslab/io_preformat_input_polars.py,sha256=HGdi6rXPQnYjTW8fMUds-uF6Lt8uElL3Er_Afv3OjTc,24767
-gwaslab/io_process_args.py,sha256=TIv0DyaVEcHnLBGdOD52GBZiO6nAQJycAmmVdEYPmRE,1918
-gwaslab/io_read_ldsc.py,sha256=9tV4AfQZmCAyiNSR9uALmXWOytWhBdT0pfMAY5Mx_QQ,13407
-gwaslab/io_read_pipcs.py,sha256=MPkdVDff_JTmoBCDswg_GO0UQ1tFas2rI0jLuMRqRjY,2891
-gwaslab/io_read_tabular.py,sha256=EG-C6KhCutt4J4LlOMgXnqzJvU-EZXzVhMvaDFnHrMM,2380
-gwaslab/io_to_formats.py,sha256=uAmZ4xzVoJqXGXxwTZlbppli4fPc2EshnuTJm2DC4v8,32799
-gwaslab/io_to_pickle.py,sha256=HhePU0VcaGni0HTNU0BqoRaOnrr0NOxotgY6ISdx3Ck,1833
-gwaslab/ldsc_irwls.py,sha256=83JbAMAhD0KOfpv4IJa6LgUDfQjp4XSJveTjnhCBJYQ,6142
-gwaslab/ldsc_jackknife.py,sha256=XrWHoKS_Xn9StG1I83S2vUMTertsb-GH-_gOFYUhLeU,17715
-gwaslab/ldsc_ldscore.py,sha256=ZOxMvV3PhZzLsTmkKQqjabk_9PdrCTtPhbrdrpGmRAk,14580
-gwaslab/ldsc_parse.py,sha256=MBnfgcWlV4oHp9MoDRh1mpilaHhAR15Af77hMFn4-5k,10564
-gwaslab/ldsc_regressions.py,sha256=yzbGjgNV7u-SWXNPsh9S8y9mK97Bim_Nmad9G9V18ZU,30078
-gwaslab/ldsc_sumstats.py,sha256=O0olsDxKlh1MJ1gAuEN1t40rxhajOEwOQ20ak7xoDrI,26245
-gwaslab/prscs_gigrnd.py,sha256=oKv3lN0AJjg-Vm39_qMzVZ-iux5rVWBUU1meJv4iEs8,2872
-gwaslab/prscs_mcmc_gtb.py,sha256=QdwUY0V4D1eEfgZVO_XRrnXcShkbBZcCAZgLdeXPJVI,4607
-gwaslab/prscs_parse_genet.py,sha256=N7UmyvdO--yTKvbjMNQCVucRIs4PbRGf93maGkh8PP4,3137
-gwaslab/qc_build.py,sha256=oeJqV-zbn-9FZ7SsmT4DPuYTt_IIeXw0XtmEkSzN5qA,2145
-gwaslab/qc_check_datatype.py,sha256=XuL4sg-OkdIiGaHg98JHZems0Uo-OyF5DlUTyE9gUd4,4580
-gwaslab/qc_check_datatype_polars.py,sha256=rJ1dIruxclHi37zd5xpS1ml30-200NI-FoEAVTe9_Eo,4218
-gwaslab/qc_fix_sumstats.py,sha256=qjIJxBr_6HpKQLkKRPrbLZEEOr5DzP8Go82AOxgDadY,98448
-gwaslab/qc_fix_sumstats_polars.py,sha256=5DY2PkWiZdfY-k8jXW69YnYPUmJiAw8uaolG8Oztr5g,9600
-gwaslab/run_script.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-gwaslab/util_abf_finemapping.py,sha256=LRcopjtkT-iXtKPAJIzR4qjPdhD7nrS_BGit4EW89FM,3054
-gwaslab/util_ex_calculate_ldmatrix.py,sha256=TeXazNXInGYrBR58Q3-f51yrHz5-_A3tXNieYJA2-i8,16924
-gwaslab/util_ex_calculate_prs.py,sha256=9uJ588Sdj4V0vw3OZ9NeLECwOvW67f0IdLandVPS5RY,9442
-gwaslab/util_ex_gwascatalog.py,sha256=RZ_qIsfjONUbF3AGMp-0feTBubOEEZUufYGdvv0Sk7g,9211
-gwaslab/util_ex_infer_ancestry.py,sha256=AXLEhuJUBT6XIYjADB-envFRGIZ-misnegGdtK8SsFc,2192
-gwaslab/util_ex_ldproxyfinder.py,sha256=HadmnjEv5EvZCHR5SFSAbqxZWJryEErJftCS0WhZUbs,16898
-gwaslab/util_ex_ldsc.py,sha256=uEVrsGrT5A-ni7Vw7esvqQ7NwiR1P10Q_N1_uZNRzRY,21600
-gwaslab/util_ex_match_ldmatrix.py,sha256=8nFziC8LiUy83bG9vW_u_CzbZek-9R9eVIfFdRBDkrA,17495
-gwaslab/util_ex_plink_filter.py,sha256=pK1Yxtv9-J4rMOdVAG7VU9PktvI6-y4FxBiVEH0QuRs,1673
-gwaslab/util_ex_process_h5.py,sha256=ynFvo3zxgvOxWYL565v2IQf8P6iEuq7UlKQ_ULxrd6Y,2831
-gwaslab/util_ex_process_ref.py,sha256=GQ0ZEWLxGpHLdBs3tqnAqKn3Pqx1A1YvNbYrBLBvXeg,17126
-gwaslab/util_ex_run_2samplemr.py,sha256=eIw-bHlYpgqgRnAhWIWNTbMplVbH4Dbj9kDyDBtzkT0,10423
-gwaslab/util_ex_run_ccgwas.py,sha256=8uOAaJ44zAhlxj_A2vth5AzRLk2_BYlYBXEccFbB6T0,5959
-gwaslab/util_ex_run_clumping.py,sha256=7JdHP2XmJS1b0yJObxXDKvEXuZ6wezHvvUMFEzVcswY,8081
-gwaslab/util_ex_run_coloc.py,sha256=evLJ_ct_RV7UKLnYGJ_VfT6MeuGeYDtj8M8xqqk-X-U,6297
-gwaslab/util_ex_run_hyprcoloc.py,sha256=sElGLXsBKx3PpDTOET7ulvjBShtDOJ3OyDuOp3Yl_y0,4722
-gwaslab/util_ex_run_magma.py,sha256=40Mr9IIkUXTHa3bBfROORr-5iVre-W8SeoZhHjh7aTo,2436
-gwaslab/util_ex_run_mesusie.py,sha256=g0x7-zwoN9fbHYJQAue3vAMIeFu3x8H9KjgiYI1u9Mk,5532
-gwaslab/util_ex_run_mtag.py,sha256=TxfDwjbGy5C1SiTVDMNopcSjl9p5mgCjJVBfeLq__bg,2952
-gwaslab/util_ex_run_prscs.py,sha256=_BOUqX3fgALdGx-xDyWlREXCafZZddhcK8ufoESUaac,3396
-gwaslab/util_ex_run_scdrs.py,sha256=cs1-6QMB2uixa7j97vN7xe3NQ8aQwZ1QAmfj_cc-Kec,3024
-gwaslab/util_ex_run_susie.py,sha256=YbHishvu7rT83JSHw_Tb_FKzfkZ296YpvNhBesveYR4,6332
-gwaslab/util_in_calculate_gc.py,sha256=MWOXVzJv7SZx4i2_ncRiqsiEOADc7EfghaUzgGy4jaE,2219
-gwaslab/util_in_calculate_power.py,sha256=JfHJFg3tNF0f4NHgWlzVW2mSxCiP07mAHIyEfVfxTak,10360
-gwaslab/util_in_convert_h2.py,sha256=a8Cbudt3xn9WP2bPc-7ysuowB-LYub8j8GeDXl7Lk7Q,6483
-gwaslab/util_in_correct_winnerscurse.py,sha256=Gp--yAQ8MMzdkWIvXP9C1BHVjZc-YzqHfYWhAj19w9w,2110
-gwaslab/util_in_estimate_ess.py,sha256=QDOQ5vXfHtVkUEqX-TscsC831-FMTtGXXiHo1YxSFzU,1009
-gwaslab/util_in_fill_data.py,sha256=hhH1teiQEOAZMOCtAe_de9NREUMnP5l2VrXK8_QR564,16595
-gwaslab/util_in_filter_value.py,sha256=dr1ZiTsMoYZKznQtucHBFW2mVYOv9OTESb24vXNcS0U,26648
-gwaslab/util_in_get_density.py,sha256=kpKXH69acMkeYVG5vs-VbJC3COhmuLBfYco-wuOxgjc,3934
-gwaslab/util_in_get_sig.py,sha256=jOMdDu1iWq5-qs8crHLNvn4t12VHSGQp0kG-ce2l3pQ,42441
-gwaslab/util_in_merge.py,sha256=KB5VKRTUUZ1XGYUxgCP_l3cWYanjthMdwiZ_DincCZQ,2020
-gwaslab/util_in_meta.py,sha256=_oEWvOvj6DG28sljstS0SYl8sm7oP-5pspGRvqbnipA,18683
-gwaslab/util_in_meta_polars.py,sha256=WgAelsxtvheHA-Jq1sbxh02nDhyTFHxBpP3G-iSRREY,8387
-gwaslab/util_in_snphwe.py,sha256=-KpIDx6vn_nah6H55IkV2OyjXQVXV13XyBL069WE1wM,1751
-gwaslab/viz_aux_annotate_plot.py,sha256=IyGhqFQofrVW9A8UxJ5oNVH96czQ-2_i4s1lVvf2hww,25696
-gwaslab/viz_aux_chromatin.py,sha256=aWZaXOSvGyZY7wQcoFDaqHRYCSHZbi_K4Q70HruN9ts,4125
-gwaslab/viz_aux_property.py,sha256=UIaivghnLXYpTwkKnXRK0F28Jbn9L6OaICk3K73WZaU,33
-gwaslab/viz_aux_quickfix.py,sha256=v_ZYM2KO39qvk38t0SwopVG3yHjW5MB9DzHX6kvdh1k,18692
-gwaslab/viz_aux_reposition_text.py,sha256=iRIP-Rkltlei068HekJcVubiqPrunBqvAoSQ1eHk04M,4304
-gwaslab/viz_aux_save_figure.py,sha256=HwIRDMYpeXfkBgb7mqzLN7OVPMz163U-ZVOlQJABzeg,2811
-gwaslab/viz_plot_compare_af.py,sha256=qtXW45-Sq_ugK8ZfqBYMpmf58SKi3lB3YyHnzn_akcE,5344
-gwaslab/viz_plot_compare_effect.py,sha256=QC3TsxKLk1bpiNNO0xh5fQRVcTcETmG3Zr5PXSUX3QY,69480
-gwaslab/viz_plot_credible_sets.py,sha256=RC5ZsuW8-0w0S1h4c--PZrYwfHfgZ3clM-9JcoMLJWk,5841
-gwaslab/viz_plot_effect.py,sha256=qbM6c1IB2HlUlMNgFZlJ5G8ODQJ8-oSWD8t0Q8DDuz8,10653
-gwaslab/viz_plot_forestplot.py,sha256=xgOnefh737CgdQxu5naVyRNBX1NQXPFKzf51fbh6afs,6771
-gwaslab/viz_plot_miamiplot.py,sha256=rCFEp7VNuVqeBBG3WRkmFAtFklbF79BvIQQYiSY70VY,31238
-gwaslab/viz_plot_miamiplot2.py,sha256=thukuvia6dGexGcprYVyOt-M5iSCjbpqvMVfRrY6fgk,18015
-gwaslab/viz_plot_mqqplot.py,sha256=W0rKC8I0KrUvv5zakiTcPTEF_ttrUucrwoFS5MHLIyQ,71283
-gwaslab/viz_plot_phe_heatmap.py,sha256=qoXVeFTIm-n8IinNbDdPFVBSz2yGCGK6QzTstXv6aj4,9532
-gwaslab/viz_plot_qqplot.py,sha256=cB4vRlFv69zWY9NMLfSkfAbirYp3_EEW2kQiBTEMDoc,7483
-gwaslab/viz_plot_regional2.py,sha256=BoL1V56ww9B2_vFkABgln_f6OrzobiFjUISI5X6XXMM,43146
-gwaslab/viz_plot_regionalplot.py,sha256=8u-5-yfy-UaXhaxVVz3Y5k2kBAoqzczUw1hyyD450iI,37983
-gwaslab/viz_plot_rg_heatmap.py,sha256=z-G4gxK5-H_e13jV8RQnNzXPrKSQ0c7q41-KpMrA-cs,13861
-gwaslab/viz_plot_scatter_with_reg.py,sha256=PmUZDQl2q4Dme3HLPXEwf_TrMjwJADA-uFXNDBWUEa4,8333
-gwaslab/viz_plot_stackedregional.py,sha256=Jzu5NvX45L4iTLfzXjNkxeaA9SGggtGGxEJdGUzSsuU,19163
-gwaslab/viz_plot_trumpetplot.py,sha256=y4sAFjzMaSLuWrdr9_ao-wPYCK5DlP2ykiqulWsoN_k,42680
-gwaslab/data/formatbook.json,sha256=j6XRTlJvqex4HLBtGLhiaU8JV4_cD1LWl9uqB3Oou4s,40718
-gwaslab/data/reference.json,sha256=oaE_HLFeYuEpcZ_rCGY3GwiAJWsDxRtjJOAc188WG28,12620
-gwaslab/data/chrx_par/chrx_par_hg19.bed.gz,sha256=LocZg_ozhZjQiIpgWCO4EYCW9xgkEKpRy1m-YdIpzQs,83
-gwaslab/data/chrx_par/chrx_par_hg38.bed.gz,sha256=VFW11MnQVC-Iu-ZGvUDcEhVpb-HVRsVTg-W-GNJyxP4,82
-gwaslab/data/hapmap3_SNPs/hapmap3_db150_hg19.snplist.gz,sha256=qD9RsC5S2h6l-OdpW09DWXHIi2kcPebctMnhxt8mzfU,10282886
-gwaslab/data/hapmap3_SNPs/hapmap3_db151_hg38.snplist.gz,sha256=Y8ZT2FIAhbhlgCJdE9qQVAiwnV_fcsPt72usBa7RSBM,10225828
-gwaslab/data/high_ld/high_ld_hla_hg19.bed.gz,sha256=R7IkssKu0L4WwkU9SrS84xCMdrkkKL0gnTNO_OKbG0Y,219
-gwaslab/data/high_ld/high_ld_hla_hg38.bed.gz,sha256=76CIU0pibDJ72Y6UY-TbIKE9gEPwTELAaIbCXyjm80Q,470
-gwaslab-3.6.5.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
-gwaslab-3.6.5.dist-info/licenses/LICENSE_before_v3.4.39,sha256=GhLOU_1UDEKeOacYhsRN_m9u-eIuVTazSndZPeNcTZA,1066
-gwaslab-3.6.5.dist-info/METADATA,sha256=gZzr7kuI49hnQm09FQgzzMIWGw0FI7lCIFfxw34f1dw,7073
-gwaslab-3.6.5.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-gwaslab-3.6.5.dist-info/top_level.txt,sha256=PyY6hWtrALpv2MAN3kjkIAzJNmmBTH5a2risz9KwH08,8
-gwaslab-3.6.5.dist-info/RECORD,,