gwaslab 3.5.6__py3-none-any.whl → 3.5.7__py3-none-any.whl

gwaslab/g_version.py

@@ -15,8 +15,8 @@ def _get_version():
 def gwaslab_info():
     # version meta information
     dic={
-   "version":"3.5.6",
-   "release_date":"20250306"
+   "version":"3.5.7",
+   "release_date":"20250307"
     }
     return dic   
 

gwaslab/viz_plot_mqqplot.py

@@ -111,7 +111,7 @@ def mqqplot(insumstats,
           region_marker_shapes=None,
           region_legend_marker=True,
           region_ref_alias = None,
-          cbar_title='LD $r^{2}$ with variant',
+          cbar_title='LD $\mathregular{r^2}$ with variant',
           cbar_fontsize = None,
           cbar_scale=True,
           cbar_font_family = None,
@@ -205,7 +205,9 @@ def mqqplot(insumstats,
           title_pad=1.08, 
           title_fontsize=13,
           fontsize = 9,
-          font_family="Arial",
+          font_family=None,
+          fontfamily="Arial",
+          math_fontfamily="dejavusans",
           anno_fontsize = 9,
           figargs=None,
           fig_args= None,
@@ -230,6 +232,7 @@ def mqqplot(insumstats,
           ):
 
 # log.writeing meta info #######################################################################################
+    
     if chr_dict is None:          
         chr_dict = get_chr_to_number()
     if xtick_chr_dict is None:         
@@ -289,7 +292,8 @@ def mqqplot(insumstats,
     
     # 7 colors    
     region_ld_colors_m = ["#E51819","#367EB7","green","#F07818","#AD5691","yellow","purple"]
-    
+    if font_family is None:
+        font_family = fontfamily
     if region_title_args is None:
         region_title_args = {"size":10}
     if cbar_fontsize is None:
@@ -305,7 +309,7 @@ def mqqplot(insumstats,
     if maf_bin_colors is None:
         maf_bin_colors = ["#f0ad4e","#5cb85c", "#5bc0de","#000042"]
     if save_args is None:
-        save_args = {"dpi":400,"facecolor":"white"}
+        save_args = {"dpi":600,"facecolor":"none"}
     if highlight is None:
         highlight = list()
     if highlight_anno_args is None:
@@ -336,22 +340,15 @@ def mqqplot(insumstats,
     else:
         _if_quick_qc = False
 
-    if save is not None:
-        if type(save) is not bool:
-            if len(save)>3:
-                if save[-3:]=="pdf" or save[-3:]=="svg":
-                    fig_args["dpi"]=72
-                    scatter_args["rasterized"]=True
-                    qq_scatter_args["rasterized"]=True
-                else:
-                    fig_args["dpi"] = save_args["dpi"]
-    
     # configure dpi if saving the plot
-    fig_args, scatter_args, qq_scatter_args, save_args = _configure_fig_save_kwargs(save = save, 
+    fig_args, scatter_args, qq_scatter_args, save_args = _configure_fig_save_kwargs(mode=mode,
+                                                                                    save = save, 
                                                                                     fig_args = fig_args, 
                                                                                     scatter_args = scatter_args, 
                                                                                     qq_scatter_args = qq_scatter_args, 
-                                                                                    save_args = save_args)
+                                                                                    save_args = save_args,
+                                                                                    log=log,
+                                                                                    verbose=verbose)
 
 
     if len(anno_d) > 0 and arm_offset is None:
@@ -818,9 +815,7 @@ def mqqplot(insumstats,
                                 region=region,
                                 vcf_path=vcf_path,
                                 marker_size=marker_size,
-                                fontsize=fontsize,
                                 build=build,
-                                chrom_df=chrom_df,
                                 cbar_scale=cbar_scale,
                                 cbar_fontsize=cbar_fontsize,
                                 cbar_bbox_to_anchor=cbar_bbox_to_anchor,
@@ -829,9 +824,7 @@ def mqqplot(insumstats,
                                 cbar_equal_aspect=cbar_equal_aspect,
                                 cbar_downward_offset =cbar_downward_offset, 
                                 cbar_borderpad=cbar_borderpad,
-                                xtick_chr_dict=xtick_chr_dict,
                                 cut_line_color=cut_line_color,
-                                vcf_chr_dict =vcf_chr_dict,
                                 gtf_path=gtf_path,
                                 gtf_chr_dict = gtf_chr_dict,
                                 gtf_gene_name=gtf_gene_name,
@@ -849,13 +842,11 @@ def mqqplot(insumstats,
                                 region_grid_line = region_grid_line,
                                 region_lead_grid = region_lead_grid,
                                 region_lead_grid_line = region_lead_grid_line,
-                                region_hspace=region_hspace,
                                 region_title=region_title,
                                 region_title_args=region_title_args,
                                 region_ld_legend = region_ld_legend,
                                 region_legend_marker=region_legend_marker,
                                 region_ld_threshold = region_ld_threshold,
-                                region_ld_colors = region_ld_colors,
                                 palette = palette,
                                 region_marker_shapes = region_marker_shapes,
                                 region_recombination = region_recombination,
@@ -863,8 +854,6 @@ def mqqplot(insumstats,
                                 region_flank_factor =region_flank_factor,
                                 track_font_family=track_font_family,
                                 taf=taf,
-                                tabix=tabix,
-                                chrom=chrom,
                                 pos=pos,
                                 verbose=verbose,
                                 log=log
@@ -923,10 +912,10 @@ def mqqplot(insumstats,
 
         # Configure X, Y axes #######################################################
         log.write("Start to process figure arts.",verbose=verbose)
-        if region is None:
-            # if Manhattan plot 
- 
-            ax1 = _process_xtick(ax1=ax1, 
+
+        ax1, ax3 = _process_xtick(ax1=ax1, 
+                                  ax3=ax3,
+                                  mode=mode,
                                  chrom_df=chrom_df, 
                                  xtick_chr_dict=xtick_chr_dict, 
                                  fontsize = fontsize, 
@@ -950,7 +939,8 @@ def mqqplot(insumstats,
                                    mode=mode, 
                                    bwindowsizekb=bwindowsizekb, 
                                    fontsize=fontsize, 
-                                   font_family=font_family, 
+                                   font_family=font_family,
+                                   math_fontfamily=math_fontfamily, 
                                    ax4=ax4,
                                    log=log, 
                                    verbose=verbose)      
@@ -1132,11 +1122,14 @@ def mqqplot(insumstats,
 
 ##############################################################################################################################################################################
 
-def _configure_fig_save_kwargs(save=None, 
+def _configure_fig_save_kwargs(mode="m",
+                                save=None, 
                                fig_args=None, 
                                scatter_args=None, 
                                qq_scatter_args=None, 
-                               save_args=None):
+                               save_args=None,
+                               log=Log(),
+                               verbose=True):
     if fig_args is None:
         fig_args = dict()
     if scatter_args is None:
@@ -1152,8 +1145,14 @@ def _configure_fig_save_kwargs(save=None,
                 if save[-3:]=="pdf" or save[-3:]=="svg":
                     # to save as vectorized plot
                     fig_args["dpi"]=72
-                    scatter_args["rasterized"]=True
-                    qq_scatter_args["rasterized"]=True
+                    
+                    if mode!="r":
+                        scatter_args["rasterized"]=True
+                        qq_scatter_args["rasterized"]=True
+                        log.write("Saving as pdf/svg: scatter plot will be rasterized for mqq...", verbose=verbose)
+                    else:
+                        scatter_args["rasterized"]=False
+                        qq_scatter_args["rasterized"]=False
                 else:
                     fig_args["dpi"] = save_args["dpi"]
     return fig_args, scatter_args, qq_scatter_args, save_args
@@ -1414,45 +1413,52 @@ def _process_line(ax1, sig_line, suggestive_sig_line, additional_line, lines_to_
 
 def _process_cbar(cbar, cbar_fontsize, cbar_font_family, cbar_title, log=Log(),verbose=True):
     log.write(" -Processing color bar...",verbose=verbose)
-    #if type(cbar) == list:
-    #    for cbar_single in cbar:
-    #        cbar_yticklabels = cbar_single.ax.get_yticklabels()
-    #        cbar_single.ax.set_yticklabels(cbar_yticklabels, fontsize=cbar_fontsize, family=cbar_font_family )
-    #        cbar_single.ax.set_title(cbar_title, fontsize=cbar_fontsize, family=cbar_font_family, loc="center",y=-0.2 )
-    #else:
-    
+
     cbar_yticklabels = cbar.get_yticklabels()
-    cbar.set_yticklabels(cbar_yticklabels, fontsize=cbar_fontsize, family=cbar_font_family )
+    cbar.set_yticklabels(cbar_yticklabels, 
+                         fontsize=cbar_fontsize, 
+                         family=cbar_font_family )
     cbar_xticklabels = cbar.get_xticklabels()
-    cbar.set_xticklabels(cbar_xticklabels, fontsize=cbar_fontsize, family=cbar_font_family )
+    cbar.set_xticklabels(cbar_xticklabels, 
+                         fontsize=cbar_fontsize, 
+                         family=cbar_font_family )
 
-    cbar.set_title(cbar_title, fontsize=cbar_fontsize, family=cbar_font_family, loc="center", y=1.00 )
+    cbar.set_title(cbar_title, fontsize=cbar_fontsize, 
+                               family=cbar_font_family, 
+                               loc="center", y=1.00 )
     return cbar
 
-def _process_xtick(ax1, chrom_df, xtick_chr_dict, fontsize, font_family, log=Log(),verbose=True):
+def _process_xtick(ax1, mode, chrom_df, xtick_chr_dict, fontsize, font_family="Arial", ax3=None , log=Log(),verbose=True):
+    
     log.write(" -Processing X ticks...",verbose=verbose)
-    ax1.set_xticks(chrom_df.astype("float64"))
-    ax1.set_xticklabels(chrom_df.index.astype("Int64").map(xtick_chr_dict),fontsize=fontsize,family=font_family)    
-    return ax1
+    
+    if mode!="r":
+        ax1.set_xticks(chrom_df.astype("float64"))
+        ax1.set_xticklabels(chrom_df.index.astype("Int64").map(xtick_chr_dict),
+                            fontsize=fontsize,
+                            family=font_family)    
+    
+    if ax3 is not None:
+        ax3.tick_params(axis='x', 
+                        labelsize=fontsize,
+                        labelfontfamily=font_family) 
+    
+    return ax1, ax3
 
 def _process_ytick(ax1, fontsize, font_family, ax4, log=Log(),verbose=True):
     log.write(" -Processing Y labels...",verbose=verbose)
-    #ax1_yticklabels = ax1.get_yticklabels()
-    #print(ax1_yticklabels)
-    #plt.draw()
-    #ax1_yticks = ax1.get_yticks()
-    #print(ax1_yticks)
-    #ax1.set_yticklabels(ax1_yticklabels,fontsize=fontsize,family=font_family) 
-    ax1.tick_params(axis='y', labelsize=fontsize,labelfontfamily=font_family)
-    #ax1.set_yticks(ax1_yticks,ax1_yticklabels,fontsize=fontsize,family=font_family) 
+    
+    ax1.tick_params(axis='y', 
+                    labelsize=fontsize,
+                    labelfontfamily=font_family)
+    
     if ax4 is not None:
-        #ax4_yticklabels = ax4.get_yticklabels()
-        #ax4_yticks = ax4.get_yticks()
-        ax4.tick_params(axis='y', labelsize=fontsize,labelfontfamily=font_family)
-        #ax4.set_yticks(ax4_yticks,ax4_yticklabels, fontsize=fontsize,family=font_family) 
+        ax4.tick_params(axis='y', 
+                        labelsize=fontsize,
+                        labelfontfamily=font_family)
     return ax1, ax4
 
-def _process_xlabel(region, xlabel, ax1, gtf_path, mode, fontsize, font_family,  ax3=None , log=Log(),verbose=True):
+def _process_xlabel(region, xlabel, ax1, gtf_path, mode, fontsize, font_family="Arial",  ax3=None , log=Log(),verbose=True):
     log.write(" -Processing X labels...",verbose=verbose)
     if region is not None:
         if xlabel is None:
@@ -1467,19 +1473,29 @@ def _process_xlabel(region, xlabel, ax1, gtf_path, mode, fontsize, font_family,
         ax1.set_xlabel(xlabel,fontsize=fontsize,family=font_family)
     return ax1, ax3
 
-def _process_ylabel(ylabel, ax1,  mode, bwindowsizekb, fontsize, font_family, ax4=None, log=Log(),verbose=True):
+def _process_ylabel(ylabel, ax1,  mode, bwindowsizekb, fontsize, font_family, math_fontfamily, ax4=None, log=Log(),verbose=True):
     log.write(" -Processing Y labels...",verbose=verbose)
     if "b" in mode:
         if ylabel is None:
             ylabel ="Density of GWAS \n SNPs within "+str(bwindowsizekb)+" kb"
-        ax1.set_ylabel(ylabel,ha="center",va="bottom",fontsize=fontsize,family=font_family)
+        ax1.set_ylabel(ylabel,ha="center",va="bottom",
+                       fontsize=fontsize,
+                       family=font_family,
+                       math_fontfamily=math_fontfamily)
     else:
         if ylabel is None:
-            ylabel ="$-log_{10}(P)$"
-        ax1.set_ylabel(ylabel,fontsize=fontsize,family=font_family)
+            ylabel ="$\mathregular{-log_{10}(P)}$"
+        ax1.set_ylabel(ylabel,
+                       fontsize=fontsize,
+                       family=font_family, 
+                       math_fontfamily=math_fontfamily)
+    
     if ax4 is not None:
         ax4_ylabel = ax4.get_ylabel()
-        ax4.set_ylabel(ax4_ylabel, fontsize=fontsize, family=font_family )
+        ax4.set_ylabel(ax4_ylabel, 
+                       fontsize=fontsize, 
+                       family=font_family,
+                       math_fontfamily=math_fontfamily )
     return ax1, ax4
 
 def _process_spine(ax1, mode):
@@ -1494,6 +1510,11 @@ def _process_spine(ax1, mode):
 
 
 def _process_layout(mode, figax, fig_args, mqqratio, region_hspace):
+    #ax1 m / r
+    #ax2 qq
+    #ax3 gene track
+    #ax4 recombination
+
     if  mode=="qqm": 
         fig, (ax2, ax1) = plt.subplots(1, 2,gridspec_kw={'width_ratios': [1, mqqratio]},**fig_args)
         ax3 = None

gwaslab/viz_plot_regional2.py

@@ -36,12 +36,8 @@ def _plot_regional(
     region,
     vcf_path,
     marker_size,
-    fontsize,
     build,
-    chrom_df,
-    xtick_chr_dict,
     cut_line_color,
-    vcf_chr_dict = None,
     gtf_path="default",
     gtf_chr_dict = get_number_to_chr(),
     gtf_gene_name=None,
@@ -50,7 +46,6 @@ def _plot_regional(
     rr_chr_dict = get_number_to_chr(),
     rr_lim = (0,100),
     rr_ylabel = True,
-    rr_title=None,
     region_ld_legend=True,
     region_title=None,
     mode="mqq",
@@ -64,9 +59,7 @@ def _plot_regional(
     region_lead_grid = True,
     region_lead_grid_line = {"alpha":0.5,"linewidth" : 2,"linestyle":"--","color":"#FF0000"},
     region_title_args = None,
-    region_hspace=0.02,
     region_ld_threshold = [0.2,0.4,0.6,0.8],
-    region_ld_colors = ["#E4E4E4","#020080","#86CEF9","#24FF02","#FDA400","#FF0000","#FF0000"],
     region_marker_shapes=None,
     cbar_fontsize=None,
     cbar_scale=False,
@@ -84,8 +77,6 @@ def _plot_regional(
     track_font_family="Arial",
     taf=[4,0,0.95,1,1],
     # track_n, track_n_offset,font_ratio,exon_ratio,text_offset
-    tabix=None,
-    chrom="CHR",
     pos="POS",
     verbose=True,
     log=Log()
@@ -225,7 +216,7 @@ def _plot_regional(
         if "r" in mode:
             if gtf_path is not None: 
                 ax3.set_xticks(np.linspace(gene_track_start_i+region[1], gene_track_start_i+region[2], num=region_step))
-                ax3.set_xticklabels(region_ticks,rotation=45,fontsize=fontsize,family="sans-serif")
+                ax3.set_xticklabels(region_ticks,rotation=45)
             
             if region_grid==True:
                 for i in np.linspace(gene_track_start_i+region[1], gene_track_start_i+region[2], num=region_step):
@@ -241,7 +232,7 @@ def _plot_regional(
         else:
             # set x ticks m plot
             ax1.set_xticks(np.linspace(gene_track_start_i+region[1], gene_track_start_i+region[2], num=region_step))
-            ax1.set_xticklabels(region_ticks,rotation=45,fontsize=fontsize,family="sans-serif")
+            ax1.set_xticklabels(region_ticks,rotation=45)
     
         ax1.set_xlim([gene_track_start_i+region[1], gene_track_start_i+region[2]])
 
@@ -498,7 +489,7 @@ def _add_ld_legend(sumstats, ax1, region_ld_threshold, region_ref,region_ref_ind
     return ax1, cbar
 
 # -############################################################################################################################################################################
-def  _plot_recombination_rate(sumstats,pos, region, ax1, rr_path, rr_chr_dict, rr_header_dict, build,rr_lim,rr_ylabel=True):
+def  _plot_recombination_rate(sumstats,pos, region, ax1, rr_path, rr_chr_dict, rr_header_dict, build,rr_lim, rr_ylabel=True):
     ax4 = ax1.twinx()
     most_left_snp = sumstats["i"].idxmin()
     

gwaslab/viz_plot_rg_heatmap.py

@@ -37,7 +37,7 @@ def plot_rg(ldscrg,
         corrections=None,
         panno_texts=None,
         equal_aspect=True,
-        cmap = matplotlib.cm.get_cmap('RdBu'),
+        cmap = None,
         full_cell =None,
         log=Log(),
         panno_args=None,
@@ -57,6 +57,11 @@ def plot_rg(ldscrg,
     
     log.write("Start to create ldsc genetic correlation heatmap..." ,verbose=verbose)
     # configure arguments
+    if cmap is None:
+        try: #matplotlib <3.9
+            cmap = matplotlib.cm.get_cmap('RdBu')
+        except:
+            cmap = matplotlib.colormaps.get_cmap('RdBu')
     if fig_args is None:
         fig_args = {"dpi":300}
     if colorbar_args is None:

gwaslab/viz_plot_stackedregional.py

@@ -56,7 +56,7 @@ def plot_stacked_mqq(   objects,
                         gtf=None,
                         gene_track_height=0.5,
                         fig_args=None,
-                        region_hspace=0.05,
+                        region_hspace=0.07,
                         subplot_height=4,
                         region_lead_grids = None,
                         region_lead_grid_line=None,
@@ -113,10 +113,10 @@ def plot_stacked_mqq(   objects,
     if region_ld_legends is None:
         region_ld_legends = [0]
     if title_args is None:
-        title_args = {"family":"Arial"}
+        title_args = {"family":font_family}
     else:
         if "family" not in title_args.keys():
-            title_args["family"] = "Arial"
+            title_args["family"] = font_family
 
     if save is not None:
         if type(save) is not bool:
@@ -124,10 +124,17 @@ def plot_stacked_mqq(   objects,
                 if save[-3:]=="pdf" or save[-3:]=="svg":
                     log.write(" -Adjusting options for saving as pdf/svg...",verbose=verbose)
                     fig_args["dpi"]=72
+                    
                     if "scatter_args" not in  mqq_args.keys():
                         mqq_args["scatter_args"]={"rasterized":True}
                     else:
                         mqq_args["scatter_args"]["rasterized"] = True
+
+                    if mode=="r":
+                        if "scatter_args" not in  mqq_args.keys():
+                            mqq_args["scatter_args"]={"rasterized":False}
+                        else:
+                            mqq_args["scatter_args"]["rasterized"] = False
                 else:
                     fig_args["dpi"] = save_args["dpi"]
     # create figure and axes ##################################################################################################################
@@ -363,10 +370,15 @@ def _add_new_y_label(mode, fig, gene_track_height,n_plot,subplot_height ,fontsiz
     gene_track_height_ratio = gene_track_height/(gene_track_height + n_plot*subplot_height)
     ylabel_height = (1 - gene_track_height_ratio)*0.5 + gene_track_height_ratio
     if mode=="r":
-        fig.text(0.08, ylabel_height , "$-log_{10}(P)$", va='center', rotation='vertical',fontsize=fontsize,family=font_family)
+        fig.text(0.08, ylabel_height , "$\mathregular{-log_{10}(P)}$", va='center', rotation='vertical',
+                 fontsize=fontsize,
+                 family=font_family)
+        
         fig.text(0.93, ylabel_height, "Recombination rate(cM/Mb)", va='center', rotation=-90,fontsize=fontsize,family=font_family)
     elif mode=="m":
-        fig.text(0.08, ylabel_height , "$-log_{10}(P)$", va='center', rotation='vertical',fontsize=fontsize,family=font_family)    
+        fig.text(0.08, ylabel_height , "$\mathregular{-log_{10}(P)}$", va='center', rotation='vertical',
+                 fontsize=fontsize,
+                 family=font_family)    
 
 def _sort_args(mqq_args, n_plot):
     mqq_args_for_each_plot={i:{} for i in range(n_plot)}

{gwaslab-3.5.6.dist-info → gwaslab-3.5.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: gwaslab
-Version: 3.5.6
+Version: 3.5.7
 Summary: A collection of handy tools for GWAS SumStats
 Author-email: Yunye <yunye@gwaslab.com>
 Project-URL: Homepage, https://cloufield.github.io/gwaslab/
@@ -8,7 +8,7 @@ Project-URL: Github, https://github.com/Cloufield/gwaslab
 Classifier: Programming Language :: Python :: 3
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Operating System :: OS Independent
-Requires-Python: <3.11,>=3.9
+Requires-Python: <3.13,>=3.9
 Description-Content-Type: text/markdown
 License-File: LICENSE
 License-File: LICENSE_before_v3.4.39

{gwaslab-3.5.6.dist-info → gwaslab-3.5.7.dist-info}/RECORD

@@ -14,7 +14,7 @@ gwaslab/g_Sumstats_summary.py,sha256=FECvvFXJVKaCX5dggBvvk9YvJ6AbdbcLfjltysX7wEE
 gwaslab/g_headers.py,sha256=Q37MZgc2G1bMzzJX94Kq6GoRYJyfUxQX50CvyIerXww,6524
 gwaslab/g_meta.py,sha256=Orj8WhFvbylDmaAp9Px_GRUoyEBVML8MLa9829sNM0o,2588
 gwaslab/g_vchange_status.py,sha256=w3zsYYOcCaI3PTeboonvkQjudzUAfVIgATzRdiPViZs,1939
-gwaslab/g_version.py,sha256=XU8rILb0iLB_g-Daw4cuksdSLl7P_mQO9M06voc1t1k,1889
+gwaslab/g_version.py,sha256=AdCrtpOcYXhFe4LFCH2xi4r0VT1oQG7Coqhyl842u8w,1889
 gwaslab/hm_casting.py,sha256=FqP4EQl83Q2OKLw004OgLIvUH795TVCGwziLk5jsHqY,11368
 gwaslab/hm_harmonize_sumstats.py,sha256=ymM33bwOOkLteiLXUuSSzURudgCrkVMTR7wUwXf1jQs,84381
 gwaslab/hm_rsid_to_chrpos.py,sha256=ODWREO0jPN0RAfNzL5fRzSRANfhiksOvUVPuEsFZQqA,6552
@@ -71,14 +71,14 @@ gwaslab/viz_plot_effect.py,sha256=7p3YnGcgIG0ajwQSNCiHlmX9BvEeClwvQ-DhPe5LzSI,97
 gwaslab/viz_plot_forestplot.py,sha256=xgOnefh737CgdQxu5naVyRNBX1NQXPFKzf51fbh6afs,6771
 gwaslab/viz_plot_miamiplot.py,sha256=rCFEp7VNuVqeBBG3WRkmFAtFklbF79BvIQQYiSY70VY,31238
 gwaslab/viz_plot_miamiplot2.py,sha256=tr3vRq6NLmoVoOSYbUkvXMHRONLLrvqjkRYN1iSX5-I,16214
-gwaslab/viz_plot_mqqplot.py,sha256=u61iABMihbMCDNMVSuvTscjeteZKlfIlyEK4xls2dE0,69557
+gwaslab/viz_plot_mqqplot.py,sha256=VIlAFL0lq4nEzqMh17I9d9u6HjCX3Jku69XHwIm1Fmw,69836
 gwaslab/viz_plot_phe_heatmap.py,sha256=qoXVeFTIm-n8IinNbDdPFVBSz2yGCGK6QzTstXv6aj4,9532
 gwaslab/viz_plot_qqplot.py,sha256=psQgVpP29686CEZkzQz0iRbApzqy7aE3GGiBcazVvNw,7247
-gwaslab/viz_plot_regional2.py,sha256=CRjuHnT4ghoInQ7AzcIQCrtk9jKxY8Kvc5biBXzT8Hg,43426
+gwaslab/viz_plot_regional2.py,sha256=EcLHhdWMj3YPtN-YOkXG9W6qf-lktTFlRMFRRQvY9kA,43106
 gwaslab/viz_plot_regionalplot.py,sha256=8u-5-yfy-UaXhaxVVz3Y5k2kBAoqzczUw1hyyD450iI,37983
-gwaslab/viz_plot_rg_heatmap.py,sha256=PidUsgOiEVt6MfBPCF3_yDhOEytZ-I1q-ZD6_0pFrV4,13713
+gwaslab/viz_plot_rg_heatmap.py,sha256=z-G4gxK5-H_e13jV8RQnNzXPrKSQ0c7q41-KpMrA-cs,13861
 gwaslab/viz_plot_scatter_with_reg.py,sha256=PmUZDQl2q4Dme3HLPXEwf_TrMjwJADA-uFXNDBWUEa4,8333
-gwaslab/viz_plot_stackedregional.py,sha256=0U2TVyJHdk1Apk_7AT5bwwUeEpWeNcjbEVAWWoAsFoY,18613
+gwaslab/viz_plot_stackedregional.py,sha256=gt-pj4c4AMgmlNgOCKlpCWJN1iU_Z5NYljITRc-OyI4,19032
 gwaslab/viz_plot_trumpetplot.py,sha256=y4sAFjzMaSLuWrdr9_ao-wPYCK5DlP2ykiqulWsoN_k,42680
 gwaslab/data/formatbook.json,sha256=N2nJs80HH98Rsu9FxaSvIQO9J5yIV97WEtAKjRqYwiY,38207
 gwaslab/data/reference.json,sha256=IrjwFnXjrpVUp3zYfcYClpibJE9Y-94gtrC1Aw8sXxg,12332
@@ -88,9 +88,9 @@ gwaslab/data/hapmap3_SNPs/hapmap3_db150_hg19.snplist.gz,sha256=qD9RsC5S2h6l-OdpW
 gwaslab/data/hapmap3_SNPs/hapmap3_db151_hg38.snplist.gz,sha256=Y8ZT2FIAhbhlgCJdE9qQVAiwnV_fcsPt72usBa7RSBM,10225828
 gwaslab/data/high_ld/high_ld_hla_hg19.bed.gz,sha256=R7IkssKu0L4WwkU9SrS84xCMdrkkKL0gnTNO_OKbG0Y,219
 gwaslab/data/high_ld/high_ld_hla_hg38.bed.gz,sha256=76CIU0pibDJ72Y6UY-TbIKE9gEPwTELAaIbCXyjm80Q,470
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-gwaslab-3.5.6.dist-info/LICENSE_before_v3.4.39,sha256=GhLOU_1UDEKeOacYhsRN_m9u-eIuVTazSndZPeNcTZA,1066
-gwaslab-3.5.6.dist-info/METADATA,sha256=SQE2GcWFkajxX8jOAZ6uZEfwErn_F2GMf0jqHQVUKrY,7750
-gwaslab-3.5.6.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
-gwaslab-3.5.6.dist-info/top_level.txt,sha256=PyY6hWtrALpv2MAN3kjkIAzJNmmBTH5a2risz9KwH08,8
-gwaslab-3.5.6.dist-info/RECORD,,
+gwaslab-3.5.7.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+gwaslab-3.5.7.dist-info/LICENSE_before_v3.4.39,sha256=GhLOU_1UDEKeOacYhsRN_m9u-eIuVTazSndZPeNcTZA,1066
+gwaslab-3.5.7.dist-info/METADATA,sha256=QKvLYkpRCauJ2uiVpd7xfO_w9DEKg4qsM_CiSRfcUkQ,7750
+gwaslab-3.5.7.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
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+gwaslab-3.5.7.dist-info/RECORD,,