gwaslab 3.4.46__py3-none-any.whl → 3.4.48__py3-none-any.whl

gwaslab/viz_plot_stackedregional.py

@@ -57,7 +57,11 @@ def plot_stacked_mqq(objects,
                         fig_args=None,
                         region_hspace=0.05,
                         subplot_height=4,
+                        region_lead_grids = None,
                         region_lead_grid_line=None,
+                        region_ld_legends = None,
+                        fontsize=9,
+                        font_family="Arial",
                         build="99", 
                         save=None,
                         save_args=None,
@@ -83,6 +87,13 @@ def plot_stacked_mqq(objects,
         region_chromatin_height = len(region_chromatin_files) * region_chromatin_height
     if region_chromatin_labels is None:
         region_chromatin_labels = []
+    if region_ld_legends is None:
+        region_ld_legends = [0]
+    if title_args is None:
+        title_args = {"family":"Arial"}
+    else:
+        if "family" not in title_args.keys():
+            title_args["family"] = "Arial"
     # create figure and axes ##################################################################################################################
     if mode=="r":
         if len(vcfs)==1:
@@ -118,7 +129,9 @@ def plot_stacked_mqq(objects,
                                           'width_ratios':[mqqratio,1]},
                                           **fig_args)
         plt.subplots_adjust(hspace=region_hspace)
-
+    
+    if region_lead_grids is None:
+        region_lead_grids = [i for i in range(len(axes))]
     ##########################################################################################################################################
     mqq_args_for_each_plot = _sort_args(mqq_args, n_plot)
     ##########################################################################################################################################
@@ -131,6 +144,7 @@ def plot_stacked_mqq(objects,
     ##########################################################################################################################################
     # a dict to store lead variants of each plot
     lead_variants_is={}
+    lead_variants_is_color ={}
 
     ##########################################################################################################################################
     # plot manhattan plot
@@ -141,10 +155,14 @@ def plot_stacked_mqq(objects,
             figax = (fig,axes[index],axes[-1])
         elif mode=="mqq":
             figax = (fig,axes[index,0],axes[index,1])
+        if index in region_ld_legends:
+            region_ld_legend = True
+        else:
+            region_ld_legend = False
         #################################################################
         if index==0:
             # plot last m and gene track 
-            fig,log,lead_i,lead_i2 = mqqplot(sumstats,
+            fig,log,lead_snp_is,lead_snp_is_color = mqqplot(sumstats,
                             chrom="CHR",
                             pos="POS",
                             p="P",
@@ -153,7 +171,10 @@ def plot_stacked_mqq(objects,
                             snpid="SNPID",
                             vcf_path=vcfs[index],
                             mode=mode,
+                            fontsize=fontsize,
+                            font_family=font_family,
                             region_lead_grid=False,
+                            region_ld_legend=region_ld_legend,
                             gtf_path="default",
                             rr_ylabel=False,
                             figax=figax,
@@ -165,10 +186,11 @@ def plot_stacked_mqq(objects,
                             log=log,
                             **mqq_args_for_each_plot[index]
                             )  
-            lead_variants_is[index] = (lead_i,lead_i2)
+            lead_variants_is[index] = lead_snp_is
+            lead_variants_is_color[index] = lead_snp_is_color
         else:
             # plot only the scatter plot
-            fig,log,lead_i,lead_i2 = mqqplot(sumstats,
+            fig,log,lead_snp_is,lead_snp_is_color = mqqplot(sumstats,
                             chrom="CHR",
                             pos="POS",
                             p="P",
@@ -177,9 +199,11 @@ def plot_stacked_mqq(objects,
                             snpid="SNPID",
                             vcf_path=vcfs[index],
                             region_lead_grid=False,
+                            fontsize=fontsize,
+                            font_family=font_family,
                             mode=mode,
                             rr_ylabel=False,
-                            region_ld_legend=False,
+                            region_ld_legend=region_ld_legend,
                             gtf_path=None,
                             figax=figax,
                             _get_region_lead=True,
@@ -190,8 +214,8 @@ def plot_stacked_mqq(objects,
                             log=log,
                             **mqq_args_for_each_plot[index]
                             )
-            lead_variants_is[index] = (lead_i,lead_i2)
-
+            lead_variants_is[index] = lead_snp_is
+            lead_variants_is_color[index] = lead_snp_is_color
     if len(region_chromatin_files)>0 and mode=="r":
         xlim_i = axes[-1].get_xlim()
         fig = _plot_chromatin_state(     region_chromatin_files = region_chromatin_files, 
@@ -201,7 +225,9 @@ def plot_stacked_mqq(objects,
                                          ax = axes[-2],
                                          xlim_i=xlim_i,
                                          log=log,
-                                         verbose=verbose)    
+                                         verbose=verbose,
+                                         fontsize = fontsize,
+                                         font_family = font_family)    
     # adjust labels
     # drop labels for each plot 
     # set a common laebl for all plots
@@ -210,44 +236,44 @@ def plot_stacked_mqq(objects,
     #    title_box = dict(boxstyle='square', facecolor='white', alpha=1.0, edgecolor="black")
     #    title_box = {}
 
-    if title_args is None:
-        title_args = {}   
-    if titles is not None and mode=="r":    
-        if title_pos is None:
-            title_pos = [0.01,0.01]
-        for index,title in enumerate(titles):
-            
-            current_text = axes[index].text(title_pos[0], title_pos[1] , title, transform=axes[index].transAxes,ha="left", va='bottom',zorder=999999, **title_args)
-            r = fig.canvas.get_renderer()
-            bb = current_text.get_window_extent(renderer=r).transformed(axes[index].transAxes.inverted())
-            width = bb.width
-            height = bb.height
-
-            rect = patches.Rectangle((0.0,0.0),
-                            height=height + 0.02*2,
-                            width=width + 0.01*2, 
-                            transform=axes[index].transAxes,
-                            linewidth=1, 
-                            edgecolor='black', 
-                            facecolor='white',
-                            alpha=1.0,
-                            zorder=99998)
-            axes[index].add_patch(rect)
-            rect.set(zorder=99998) 
-    else:
-        if title_pos is None:
-            title_pos = [0.01,0.97]
-        for index,title in enumerate(titles):
-            axes[index].text(title_pos[0], title_pos[1] , title, transform=axes[index].transAxes,ha="left", va='top',zorder=999999, **title_args)
+    #if title_args is None:
+    #    title_args = {}   
+    #if titles is not None and mode=="r":    
+    #    if title_pos is None:
+    #        title_pos = [0.01,0.99]
+    #    for index,title in enumerate(titles):
+    #        
+    #        current_text = axes[index].text(title_pos[0], title_pos[1] , title, transform=axes[index].transAxes,ha="left", va='top',zorder=999999, **title_args)
+    #        r = fig.canvas.get_renderer()
+    #        bb = current_text.get_window_extent(renderer=r).transformed(axes[index].transAxes.inverted())
+    #        width = bb.width
+    #        height = bb.height
+#
+    #        rect = patches.Rectangle((0.0,1.0 - height),
+    #                        height=height + 0.02*2,
+    #                        width=width + 0.01*2, 
+    #                        transform=axes[index].transAxes,
+    #                        linewidth=1, 
+    #                        edgecolor='black', 
+    #                        facecolor='white',
+    #                        alpha=1.0,
+    #                        zorder=99998)
+    #        axes[index].add_patch(rect)
+    #        rect.set(zorder=99998) 
+    #else:
+    if title_pos is None:
+        title_pos = [0.01,0.97]
+    for index,title in enumerate(titles):
+        axes[index].text(title_pos[0], title_pos[1] , title, transform=axes[index].transAxes,ha="left", va='top',zorder=999999, **title_args)
     
     ##########################################################################################################################################
     # draw the line for lead variants
-    _draw_grid_line_for_lead_variants(mode, lead_variants_is, n_plot, axes, region_lead_grid_line,region_chromatin_files)
+    _draw_grid_line_for_lead_variants(mode, lead_variants_is,lead_variants_is_color, n_plot, axes, region_lead_grid_line,region_chromatin_files,region_lead_grids)
     
     ##########################################################################################################################################  
     _drop_old_y_labels(axes, n_plot)
     
-    _add_new_y_label(mode, fig, gene_track_height,n_plot,subplot_height )
+    _add_new_y_label(mode, fig, gene_track_height,n_plot,subplot_height ,fontsize,font_family)
     
     ##########################################################################################################################################
     save_figure(fig = fig, save = save, keyword= "stacked_" + mode, save_args=save_args, log = log, verbose=verbose)
@@ -260,26 +286,33 @@ def _drop_old_y_labels(axes, n_plot):
     for index in range(n_plot):
         axes[index].set_ylabel("")
 
-def _draw_grid_line_for_lead_variants(mode, lead_variants_is, n_plot, axes, region_lead_grid_line,region_chromatin_files):
+def _draw_grid_line_for_lead_variants(mode, lead_variants_is,lead_variants_is_color, n_plot, axes, region_lead_grid_line,region_chromatin_files,region_lead_grids):
     if len(region_chromatin_files)>0:
         n_plot_and_track = n_plot+2
     else:
         n_plot_and_track = n_plot+1
+    
+    plotted=[None]
     if mode=="r":
         for index, sig_is in lead_variants_is.items():
-            for sig_i in sig_is:
-                if sig_i is not None:
-                    for each_axis_index in range(n_plot_and_track):    
-                        axes[each_axis_index].axvline(x=sig_i, zorder=2,**region_lead_grid_line)
+            if index in region_lead_grids:
+                for j, sig_i in enumerate(sig_is):
+                    try:
+                        region_lead_grid_line["color"] = lead_variants_is_color[index][j]
+                    except:
+                        pass
+                    if sig_i not in plotted:
+                        for each_axis_index in range(n_plot_and_track):  
+                            axes[each_axis_index].axvline(x=sig_i, zorder=2,**region_lead_grid_line)
 
-def _add_new_y_label(mode, fig, gene_track_height,n_plot,subplot_height ):
+def _add_new_y_label(mode, fig, gene_track_height,n_plot,subplot_height ,fontsize,font_family):
     gene_track_height_ratio = gene_track_height/(gene_track_height + n_plot*subplot_height)
     ylabel_height = (1 - gene_track_height_ratio)*0.5 + gene_track_height_ratio
     if mode=="r":
-        fig.text(0.08, ylabel_height , "$-log_{10}(P)$", va='center', rotation='vertical')
-        fig.text(0.93, ylabel_height, "Recombination rate(cM/Mb)", va='center', rotation=-90)
+        fig.text(0.08, ylabel_height , "$-log_{10}(P)$", va='center', rotation='vertical',fontsize=fontsize,family=font_family)
+        fig.text(0.93, ylabel_height, "Recombination rate(cM/Mb)", va='center', rotation=-90,fontsize=fontsize,family=font_family)
     elif mode=="m":
-        fig.text(0.08, ylabel_height , "$-log_{10}(P)$", va='center', rotation='vertical')    
+        fig.text(0.08, ylabel_height , "$-log_{10}(P)$", va='center', rotation='vertical',fontsize=fontsize,family=font_family)    
 
 def _sort_args(mqq_args, n_plot):
     mqq_args_for_each_plot={i:{} for i in range(n_plot)}

{gwaslab-3.4.46.dist-info → gwaslab-3.4.48.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: gwaslab
-Version: 3.4.46
+Version: 3.4.48
 Summary: A collection of handy tools for GWAS SumStats
 Author-email: Yunye <yunye@gwaslab.com>
 Project-URL: Homepage, https://cloufield.github.io/gwaslab/
@@ -12,19 +12,19 @@ Requires-Python: <3.11,>=3.9
 Description-Content-Type: text/markdown
 License-File: LICENSE
 License-File: LICENSE_before_v3.4.39
-Requires-Dist: pandas !=1.5,>=1.3
-Requires-Dist: numpy <2,>=1.21.2
-Requires-Dist: matplotlib !=3.7.2,<3.9,>=3.5
-Requires-Dist: seaborn >=0.12
-Requires-Dist: scipy >=1.12
-Requires-Dist: pySAM ==0.22.1
-Requires-Dist: Biopython >=1.79
-Requires-Dist: adjustText <=0.8,>=0.7.3
-Requires-Dist: liftover >=1.1.13
-Requires-Dist: scikit-allel >=1.3.5
-Requires-Dist: pyensembl ==2.2.3
-Requires-Dist: gtfparse ==1.3.0
-Requires-Dist: h5py >=3.10.0
+Requires-Dist: pandas!=1.5,>=1.3
+Requires-Dist: numpy<2,>=1.21.2
+Requires-Dist: matplotlib!=3.7.2,<3.9,>=3.5
+Requires-Dist: seaborn>=0.12
+Requires-Dist: scipy>=1.12
+Requires-Dist: pySAM==0.22.1
+Requires-Dist: Biopython>=1.79
+Requires-Dist: adjustText<=0.8,>=0.7.3
+Requires-Dist: liftover>=1.1.13
+Requires-Dist: scikit-allel>=1.3.5
+Requires-Dist: pyensembl==2.2.3
+Requires-Dist: gtfparse==1.3.0
+Requires-Dist: h5py>=3.10.0
 
 # GWASLab
 
@@ -51,7 +51,7 @@ Warning: Known issues of GWASLab are summarized in [https://cloufield.github.io/
 ### install via pip
 
 ```
-pip install gwaslab==3.4.45
+pip install gwaslab==3.4.46
 ```
 
 ```python

{gwaslab-3.4.46.dist-info → gwaslab-3.4.48.dist-info}/RECORD

@@ -6,20 +6,20 @@ gwaslab/bd_get_hapmap3.py,sha256=asNjQYeGfQi8u3jnfenRvDdKMs5ptql5wpcUzqMlwUI,393
 gwaslab/cache_manager.py,sha256=HOTnSkCOyGEPLRl90WT8D_6pAdI8d8AzenMIDGuCeWc,28113
 gwaslab/g_Log.py,sha256=C3Zv-_6c3C9ms8bgQ-ytplz22sjk7euqXYkWr9zNeAs,1573
 gwaslab/g_Phenotypes.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-gwaslab/g_Sumstats.py,sha256=TUcFQFyODS_-FYMdXDvrBijG4Qtfi1igIWM-eEgb0nc,35352
+gwaslab/g_Sumstats.py,sha256=U5la-fJCSTN8FNxXjcULcPH8MV9D6YgMaVFNesMTa_o,35854
 gwaslab/g_SumstatsPair.py,sha256=20snPb4SlI6ftMGVjgxAuyxsxYRQF-GzzlBSnoB-3Lo,8851
 gwaslab/g_SumstatsT.py,sha256=u_DighLMnMxwTLnqm-B58pA0G6WXRj6pudPyKMVKjSU,2133
 gwaslab/g_Sumstats_summary.py,sha256=FECvvFXJVKaCX5dggBvvk9YvJ6AbdbcLfjltysX7wEE,6380
 gwaslab/g_meta.py,sha256=htWlgURWclm9R6UqFcX1a93WN27xny7lGUeyJZOtszQ,2583
 gwaslab/g_vchange_status.py,sha256=jLoVzMJFhB5k_cJKzHuBNc2HZGBWydAunCNa0n_d54g,1923
-gwaslab/g_version.py,sha256=g2bR-qFeFvLADj57VXMT5dufwba2YGD86hfDHRYURfU,1818
+gwaslab/g_version.py,sha256=kB6LiBYcRZElabjDUUEBhF5c5SVUq8vHO0pctDfBqkw,1886
 gwaslab/hm_casting.py,sha256=FqP4EQl83Q2OKLw004OgLIvUH795TVCGwziLk5jsHqY,11368
 gwaslab/hm_harmonize_sumstats.py,sha256=1hjUdle2DSKHGBp2BktfFqf-QHU_q2xWl_mPhiYc_ZA,78616
 gwaslab/hm_rsid_to_chrpos.py,sha256=ODWREO0jPN0RAfNzL5fRzSRANfhiksOvUVPuEsFZQqA,6552
 gwaslab/io_preformat_input.py,sha256=AZ43WGqVTzbo3XtClWhjRjsj6pBR9stw6JBL_TZ461U,20673
-gwaslab/io_read_ldsc.py,sha256=8S9n4imgl4d0WPms_GYld-6uUM5z7iWGiCA-M814kzY,12123
+gwaslab/io_read_ldsc.py,sha256=wsYXpH50IchBKd2dhYloSqc4YgnDkiwMsAweaCoN5Eo,12471
 gwaslab/io_read_tabular.py,sha256=EG-C6KhCutt4J4LlOMgXnqzJvU-EZXzVhMvaDFnHrMM,2380
-gwaslab/io_to_formats.py,sha256=QuGWdvnAamaZAuhymj-0SuNBaKz1maTTyH396gvVaO8,29229
+gwaslab/io_to_formats.py,sha256=m57dGoqmHzAE1E27j9YxYKVCA12_lKd1qCnZtp0WZLw,29401
 gwaslab/io_to_pickle.py,sha256=HhePU0VcaGni0HTNU0BqoRaOnrr0NOxotgY6ISdx3Ck,1833
 gwaslab/ldsc_irwls.py,sha256=83JbAMAhD0KOfpv4IJa6LgUDfQjp4XSJveTjnhCBJYQ,6142
 gwaslab/ldsc_jackknife.py,sha256=XrWHoKS_Xn9StG1I83S2vUMTertsb-GH-_gOFYUhLeU,17715
@@ -28,18 +28,19 @@ gwaslab/ldsc_parse.py,sha256=MBnfgcWlV4oHp9MoDRh1mpilaHhAR15Af77hMFn4-5k,10564
 gwaslab/ldsc_regressions.py,sha256=yzbGjgNV7u-SWXNPsh9S8y9mK97Bim_Nmad9G9V18ZU,30078
 gwaslab/ldsc_sumstats.py,sha256=O0olsDxKlh1MJ1gAuEN1t40rxhajOEwOQ20ak7xoDrI,26245
 gwaslab/qc_check_datatype.py,sha256=kW68uk4dTLOU2b1dHoVat6n0loundDysAjIqxsXW28Q,3379
-gwaslab/qc_fix_sumstats.py,sha256=-DQz5dPW6YXXVP-LV2Txa4lJrpZHhqAoKNny6IYAW18,93100
+gwaslab/qc_fix_sumstats.py,sha256=aTX5jf7MVpp6XTiP-rbEyaLAQFsn1gyH9vEH4SLH-GY,93199
 gwaslab/run_script.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-gwaslab/util_ex_calculate_ldmatrix.py,sha256=LpE__LoYRHLgVKlCHo6lYWlz9LEUVUDqYPEAP-Svbm0,14598
-gwaslab/util_ex_calculate_prs.py,sha256=5l1eiZs8YwIpEgp7i3IurP8n5KwQM5awbG9fWSm4iT4,9053
+gwaslab/util_abf_finemapping.py,sha256=LRcopjtkT-iXtKPAJIzR4qjPdhD7nrS_BGit4EW89FM,3054
+gwaslab/util_ex_calculate_ldmatrix.py,sha256=Z_spxbq6SHDS0v84I59YTTF40iyLQIOZbt0dmEcNJjw,15417
+gwaslab/util_ex_calculate_prs.py,sha256=9uJ588Sdj4V0vw3OZ9NeLECwOvW67f0IdLandVPS5RY,9442
 gwaslab/util_ex_gwascatalog.py,sha256=--Gde9HrsikfYTeFqSaYz0gUODr9wmv_gV6GZGNlElg,7688
 gwaslab/util_ex_ldproxyfinder.py,sha256=wWNW9wITWozj23gT41LR00WxU-rrHpGKbxs2H_3jEyM,9431
-gwaslab/util_ex_ldsc.py,sha256=a-OwyWmDcyinTPRfCNSeNYm6beVsydFeYmRAXAPcRnI,18350
+gwaslab/util_ex_ldsc.py,sha256=dd3QUNX7eOJY_z4mkKIE9Ey_SQGE4ox0efhq28ah_LE,18592
 gwaslab/util_ex_plink_filter.py,sha256=pK1Yxtv9-J4rMOdVAG7VU9PktvI6-y4FxBiVEH0QuRs,1673
 gwaslab/util_ex_process_h5.py,sha256=ynFvo3zxgvOxWYL565v2IQf8P6iEuq7UlKQ_ULxrd6Y,2831
-gwaslab/util_ex_process_ref.py,sha256=BwS4hmzIWdgmRY_yiG6RJQJHjYcOR-2yZX7kU3s8lPw,16552
+gwaslab/util_ex_process_ref.py,sha256=GQ0ZEWLxGpHLdBs3tqnAqKn3Pqx1A1YvNbYrBLBvXeg,17126
 gwaslab/util_ex_run_2samplemr.py,sha256=5c0DGF694T9j0Y58L2I7pr1_Z1hfpaatIgix7P5oPA8,9127
-gwaslab/util_ex_run_clumping.py,sha256=Y8KeUKuSpGc1a8iI_VKUgVQpAVBd7O9F11p85jY4oW4,7868
+gwaslab/util_ex_run_clumping.py,sha256=bs9CJENMhwVXolCNygaYtso5ikPrdPMiV13tGA0ttxg,7915
 gwaslab/util_ex_run_coloc.py,sha256=u57h8wPbTCOf6aY5u5DpzK1gv7inuDT8a15UGo-1ras,6288
 gwaslab/util_ex_run_susie.py,sha256=TXqiwBVq1io7XSlLF2_gNsYgxDLiKNnYE9pIjRWJ1Hc,5315
 gwaslab/util_in_calculate_gc.py,sha256=MWOXVzJv7SZx4i2_ncRiqsiEOADc7EfghaUzgGy4jaE,2219
@@ -52,21 +53,22 @@ gwaslab/util_in_get_density.py,sha256=kpKXH69acMkeYVG5vs-VbJC3COhmuLBfYco-wuOxgj
 gwaslab/util_in_get_sig.py,sha256=9kq1GXacknO2YnVmsTli1GlPA728ASweTZ3UKm3Wszo,38783
 gwaslab/util_in_meta.py,sha256=5K9lIZcIgUy0AERqHy1GvMN2X6dp45JUUgopuDLgt4o,11284
 gwaslab/util_in_snphwe.py,sha256=-KpIDx6vn_nah6H55IkV2OyjXQVXV13XyBL069WE1wM,1751
-gwaslab/viz_aux_annotate_plot.py,sha256=R-1GT89E4NEBAMNTYzNawdi9rjQV5LCnODgnYOOKsys,32184
-gwaslab/viz_aux_chromatin.py,sha256=NzbFFpbwAMH-39F8z0qJaExw-JcKYcAlzyzbMkvFo5M,4002
-gwaslab/viz_aux_quickfix.py,sha256=Z6ZNEAUFuWVDTzH-qGreNGxPxJLCmqhXtBrvDOgo4g8,18308
+gwaslab/viz_aux_annotate_plot.py,sha256=UTOx-OpFsM_UVphBHxqQZwCFI8bjwwB6CMsgFbAfheQ,32215
+gwaslab/viz_aux_chromatin.py,sha256=7cGmej5EkKO7fxR1b5w8r1oRRl9ofVzFRG52SCYWtz0,4109
+gwaslab/viz_aux_quickfix.py,sha256=5XM-J9D2yp5FVbK6YQKEhSCqAYBLNWSQms9WjpXxVn8,18313
 gwaslab/viz_aux_reposition_text.py,sha256=iRIP-Rkltlei068HekJcVubiqPrunBqvAoSQ1eHk04M,4304
 gwaslab/viz_aux_save_figure.py,sha256=nL-aoE8Kg06h7FgleGRBIZjhI-6w5gpn3E1HWMwBig8,2664
 gwaslab/viz_plot_compare_af.py,sha256=qtXW45-Sq_ugK8ZfqBYMpmf58SKi3lB3YyHnzn_akcE,5344
-gwaslab/viz_plot_compare_effect.py,sha256=iA74jMzh-G65U6BeXyQro08tPlJWpNyvtrjFsYHLvFM,49505
+gwaslab/viz_plot_compare_effect.py,sha256=lV-4KSQatTSsYqzEGGTkBu17I2VlVyVh1uJr-kCq630,49585
 gwaslab/viz_plot_forestplot.py,sha256=xgOnefh737CgdQxu5naVyRNBX1NQXPFKzf51fbh6afs,6771
 gwaslab/viz_plot_miamiplot.py,sha256=rCFEp7VNuVqeBBG3WRkmFAtFklbF79BvIQQYiSY70VY,31238
-gwaslab/viz_plot_miamiplot2.py,sha256=SWv82D8UBbREKsk8EoKth-2w68l6FbXyVLsb_E1hh8o,15882
-gwaslab/viz_plot_mqqplot.py,sha256=oVFiLe6Xv_-ryY8I36tGjU9StjM_ust72YSSfnZgaUg,61828
+gwaslab/viz_plot_miamiplot2.py,sha256=Jg5j9qsr8gGydU8AOKU8xRZTNH_3QM8Nxv61Vh12aG0,15732
+gwaslab/viz_plot_mqqplot.py,sha256=q_c_ZDRdirEcdHHnb030h7dTUWAFy9OVuzwbdCzZ3gU,64580
 gwaslab/viz_plot_qqplot.py,sha256=psQgVpP29686CEZkzQz0iRbApzqy7aE3GGiBcazVvNw,7247
+gwaslab/viz_plot_regional2.py,sha256=tBoGox-4ngL5o_twdIjk_VW6Iam3JDyrPKuttm6_4Sg,36862
 gwaslab/viz_plot_regionalplot.py,sha256=8u-5-yfy-UaXhaxVVz3Y5k2kBAoqzczUw1hyyD450iI,37983
 gwaslab/viz_plot_rg_heatmap.py,sha256=PidUsgOiEVt6MfBPCF3_yDhOEytZ-I1q-ZD6_0pFrV4,13713
-gwaslab/viz_plot_stackedregional.py,sha256=yWxAJyqA3Kv9PUFTLzgbAu_hP7wi3_3bVVQlJECm8Gc,14687
+gwaslab/viz_plot_stackedregional.py,sha256=AoGMer73P3y-21A2qityrDX-_sIJFRgKzkm8i9zVxKA,16420
 gwaslab/viz_plot_trumpetplot.py,sha256=ZHdc6WcVx0-oKoj88yglRkmB4bS9pOiEMcuwKW35Yvo,42672
 gwaslab/data/formatbook.json,sha256=N2nJs80HH98Rsu9FxaSvIQO9J5yIV97WEtAKjRqYwiY,38207
 gwaslab/data/reference.json,sha256=k8AvvgDsuLxzv-NCJHWvTUZ5q_DLAFxs1Th3jtL313k,11441
@@ -76,9 +78,9 @@ gwaslab/data/hapmap3_SNPs/hapmap3_db150_hg19.snplist.gz,sha256=qD9RsC5S2h6l-OdpW
 gwaslab/data/hapmap3_SNPs/hapmap3_db151_hg38.snplist.gz,sha256=Y8ZT2FIAhbhlgCJdE9qQVAiwnV_fcsPt72usBa7RSBM,10225828
 gwaslab/data/high_ld/high_ld_hla_hg19.bed.gz,sha256=R7IkssKu0L4WwkU9SrS84xCMdrkkKL0gnTNO_OKbG0Y,219
 gwaslab/data/high_ld/high_ld_hla_hg38.bed.gz,sha256=76CIU0pibDJ72Y6UY-TbIKE9gEPwTELAaIbCXyjm80Q,470
-gwaslab-3.4.46.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
-gwaslab-3.4.46.dist-info/LICENSE_before_v3.4.39,sha256=GhLOU_1UDEKeOacYhsRN_m9u-eIuVTazSndZPeNcTZA,1066
-gwaslab-3.4.46.dist-info/METADATA,sha256=aw5qahaxh7TAYCLNPdBO1FmHCWQk3mQcOlZohaGqorw,7765
-gwaslab-3.4.46.dist-info/WHEEL,sha256=cpQTJ5IWu9CdaPViMhC9YzF8gZuS5-vlfoFihTBC86A,91
-gwaslab-3.4.46.dist-info/top_level.txt,sha256=PyY6hWtrALpv2MAN3kjkIAzJNmmBTH5a2risz9KwH08,8
-gwaslab-3.4.46.dist-info/RECORD,,
+gwaslab-3.4.48.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+gwaslab-3.4.48.dist-info/LICENSE_before_v3.4.39,sha256=GhLOU_1UDEKeOacYhsRN_m9u-eIuVTazSndZPeNcTZA,1066
+gwaslab-3.4.48.dist-info/METADATA,sha256=4Cqofc_AlsSBNtwKwiLBFiDtQsh8UUvWiM_XhBYksxw,7752
+gwaslab-3.4.48.dist-info/WHEEL,sha256=Mdi9PDNwEZptOjTlUcAth7XJDFtKrHYaQMPulZeBCiQ,91
+gwaslab-3.4.48.dist-info/top_level.txt,sha256=PyY6hWtrALpv2MAN3kjkIAzJNmmBTH5a2risz9KwH08,8
+gwaslab-3.4.48.dist-info/RECORD,,

{gwaslab-3.4.46.dist-info → gwaslab-3.4.48.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (70.1.0)
+Generator: setuptools (73.0.1)
 Root-Is-Purelib: true
 Tag: py3-none-any