gwaslab 3.4.41__py3-none-any.whl → 3.4.42__py3-none-any.whl

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Files changed (24) hide show
  1. gwaslab/bd_common_data.py +14 -1
  2. gwaslab/bd_get_hapmap3.py +7 -3
  3. gwaslab/g_Sumstats.py +156 -138
  4. gwaslab/g_SumstatsPair.py +15 -15
  5. gwaslab/g_version.py +2 -2
  6. gwaslab/hm_harmonize_sumstats.py +365 -12
  7. gwaslab/io_read_tabular.py +7 -7
  8. gwaslab/io_to_formats.py +96 -21
  9. gwaslab/io_to_pickle.py +1 -1
  10. gwaslab/ldsc_ldscore.py +1 -1
  11. gwaslab/qc_fix_sumstats.py +2 -2
  12. gwaslab/util_ex_calculate_ldmatrix.py +2 -2
  13. gwaslab/util_ex_calculate_prs.py +2 -2
  14. gwaslab/util_ex_ldsc.py +163 -110
  15. gwaslab/util_ex_plink_filter.py +2 -2
  16. gwaslab/util_ex_run_clumping.py +2 -2
  17. gwaslab/util_in_filter_value.py +27 -9
  18. gwaslab/viz_plot_trumpetplot.py +115 -4
  19. {gwaslab-3.4.41.dist-info → gwaslab-3.4.42.dist-info}/METADATA +6 -3
  20. {gwaslab-3.4.41.dist-info → gwaslab-3.4.42.dist-info}/RECORD +24 -24
  21. {gwaslab-3.4.41.dist-info → gwaslab-3.4.42.dist-info}/WHEEL +1 -1
  22. {gwaslab-3.4.41.dist-info → gwaslab-3.4.42.dist-info}/LICENSE +0 -0
  23. {gwaslab-3.4.41.dist-info → gwaslab-3.4.42.dist-info}/LICENSE_before_v3.4.39 +0 -0
  24. {gwaslab-3.4.41.dist-info → gwaslab-3.4.42.dist-info}/top_level.txt +0 -0
gwaslab/viz_plot_trumpetplot.py CHANGED
@@ -13,6 +13,7 @@ from gwaslab.util_in_get_sig import annogene
13
13
  from gwaslab.viz_aux_annotate_plot import annotate_single
14
14
  from gwaslab.viz_aux_reposition_text import adjust_text_position
15
15
  from gwaslab.viz_aux_save_figure import save_figure
16
+ from gwaslab.viz_plot_mqqplot import _process_highlight
16
17
  from gwaslab.g_Log import Log
17
18
  from gwaslab.util_in_calculate_power import get_beta
18
19
  from gwaslab.util_in_calculate_power import get_power
@@ -49,6 +50,13 @@ def plottrumpet(mysumstats,
49
50
  xlim=None,
50
51
  markercolor="#597FBD",
51
52
  hue=None,
53
+ highlight = None,
54
+ highlight_chrpos = False,
55
+ highlight_color="#CB132D",
56
+ highlight_windowkb = 500,
57
+ highlight_anno_args = None,
58
+ pinpoint= None,
59
+ pinpoint_color ="red",
52
60
  scatter_args=None,
53
61
  fontsize=15,
54
62
  font_family="Arial",
@@ -106,7 +114,10 @@ def plottrumpet(mysumstats,
106
114
  scatter_args["hue"]=hue
107
115
  if markercolor is not None:
108
116
  scatter_args["color"]=markercolor
109
-
117
+ if highlight is None:
118
+ highlight = list()
119
+ if pinpoint is None:
120
+ pinpoint = list()
110
121
  #Checking columns#################################################################################################################
111
122
  log.write("Start to create trumpet plot...", verbose=verbose)
112
123
 
@@ -140,6 +151,10 @@ def plottrumpet(mysumstats,
140
151
  #loading columns #################################################################################################################
141
152
  cols_to_use = [snpid, beta, eaf, n, p]
142
153
 
154
+ if len(highlight)>0:
155
+ cols_to_use.append(pos)
156
+ cols_to_use.append(chrom)
157
+
143
158
  if anno is not None:
144
159
  if anno != "GENENAME":
145
160
  if anno!=True:
@@ -147,8 +162,8 @@ def plottrumpet(mysumstats,
147
162
  if anno not in cols_to_use:
148
163
  cols_to_use.append(anno)
149
164
  else:
150
- cols_to_use.append(pos)
151
- cols_to_use.append(chrom)
165
+ cols_to_use.append(pos) if pos not in cols_to_use else cols_to_use
166
+ cols_to_use.append(chrom) if chrom not in cols_to_use else cols_to_use
152
167
 
153
168
  if size != "ABS_BETA":
154
169
  if size not in cols_to_use:
@@ -211,6 +226,16 @@ def plottrumpet(mysumstats,
211
226
  output_hex_colors.append(mc.to_hex(rgba[i]))
212
227
  output_hex_colors
213
228
 
229
+ if len(highlight)>0:
230
+ sumstats["HUE"] = pd.NA
231
+ sumstats["HUE"] = sumstats["HUE"].astype("Int64")
232
+ sumstats = _process_highlight(sumstats=sumstats,
233
+ highlight=highlight,
234
+ highlight_chrpos=highlight_chrpos,
235
+ highlight_windowkb=highlight_windowkb,
236
+ snpid=snpid,
237
+ chrom=chrom,
238
+ pos=pos)
214
239
  ##################################################################################################
215
240
  fig, ax = plt.subplots(**figargs)
216
241
 
@@ -256,18 +281,104 @@ def plottrumpet(mysumstats,
256
281
  sumstats["ABS_BETA"] = sumstats[beta].abs()
257
282
 
258
283
  ##################################################################################################
259
-
284
+ size_norm = (sumstats["ABS_BETA"].min(), sumstats["ABS_BETA"].max())
285
+ ## if highlight ##################################################################################################
260
286
  dots = sns.scatterplot(data=sumstats,
261
287
  x=maf,
262
288
  y=beta,
263
289
  size=size,
264
290
  ax=ax,
265
291
  sizes=sizes,
292
+ size_norm=size_norm,
266
293
  legend=True,
267
294
  edgecolor="black",
268
295
  alpha=0.8,
296
+ zorder=2,
269
297
  **scatter_args)
270
298
 
299
+ if len(highlight) >0:
300
+
301
+ legend = None
302
+ style=None
303
+ linewidth=0
304
+ edgecolor="black"
305
+
306
+ if pd.api.types.is_list_like(highlight[0]) and highlight_chrpos==False:
307
+ for i, highlight_set in enumerate(highlight):
308
+ scatter_args["color"]=highlight_color[i%len(highlight_color)]
309
+ log.write(" -Highlighting set {} target loci...".format(i+1),verbose=verbose)
310
+ sns.scatterplot(data=sumstats.loc[sumstats["HUE"]==i], x=maf,
311
+ y=beta,
312
+ legend=legend,
313
+ style=style,
314
+ size=size,
315
+ sizes=sizes,
316
+ size_norm=size_norm,
317
+ linewidth=linewidth,
318
+ zorder=3+i,
319
+ ax=ax,edgecolor=edgecolor,**scatter_args)
320
+
321
+ else:
322
+ log.write(" -Highlighting target loci...",verbose=verbose)
323
+ scatter_args["color"]=highlight_color
324
+ sns.scatterplot(data=sumstats.loc[sumstats["HUE"]==0], x=maf,
325
+ y=beta,
326
+ legend=legend,
327
+ size=size,
328
+ sizes=sizes,
329
+ size_norm=size_norm,
330
+ zorder=3,
331
+ ax=ax,
332
+ edgecolor="black",
333
+ **scatter_args)
334
+ ####################################################################################################################
335
+ if len(pinpoint)>0:
336
+ legend = None
337
+ style=None
338
+ linewidth=0
339
+ edgecolor="black"
340
+ if pd.api.types.is_list_like(pinpoint[0]):
341
+
342
+ for i, pinpoint_set in enumerate(pinpoint):
343
+ scatter_args["color"]=pinpoint_color[i%len(pinpoint_color)]
344
+ if sum(sumstats[snpid].isin(pinpoint_set))>0:
345
+ to_pinpoint = sumstats.loc[sumstats[snpid].isin(pinpoint_set),:]
346
+ log.write(" -Pinpointing set {} target vairants...".format(i+1),verbose=verbose)
347
+ sns.scatterplot(data=to_pinpoint,
348
+ x=maf,
349
+ y=beta,
350
+ legend=legend,
351
+ size=size,
352
+ sizes=sizes,
353
+ size_norm=size_norm,
354
+ zorder=3,
355
+ ax=ax,
356
+ edgecolor="black",
357
+ **scatter_args)
358
+ #ax.scatter(to_pinpoint[maf],to_pinpoint[beta],color=pinpoint_color[i%len(pinpoint_color)],zorder=100,s=to_pinpoint[size])
359
+ else:
360
+ log.write(" -Target vairants to pinpoint were not found. Skip pinpointing process...",verbose=verbose)
361
+ else:
362
+ scatter_args["color"]=pinpoint_color
363
+ if sum(sumstats[snpid].isin(pinpoint))>0:
364
+ to_pinpoint = sumstats.loc[sumstats[snpid].isin(pinpoint),:]
365
+ log.write(" -Pinpointing target vairants...",verbose=verbose)
366
+ sns.scatterplot(data=to_pinpoint, x=maf,
367
+ y=beta,
368
+ legend=legend,
369
+ size=size,
370
+ sizes=sizes,
371
+ size_norm=size_norm,
372
+ zorder=3,
373
+ ax=ax,
374
+ edgecolor="black",
375
+ **scatter_args)
376
+ #ax.scatter(to_pinpoint[maf],to_pinpoint[beta],color=pinpoint_color[i%len(pinpoint_color)],zorder=100,s=to_pinpoint[size])
377
+ else:
378
+ log.write(" -Target vairants to pinpoint were not found. Skip pinpointing process...",verbose=verbose)
379
+
380
+ ####################################################################################################################
381
+
271
382
  #second_legend = ax.legend(title="Power", loc="upper right",fontsize =fontsize,title_fontsize=fontsize)
272
383
 
273
384
  h,l = ax.get_legend_handles_labels()
{gwaslab-3.4.41.dist-info → gwaslab-3.4.42.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: gwaslab
3
- Version: 3.4.41
3
+ Version: 3.4.42
4
4
  Summary: A collection of handy tools for GWAS SumStats
5
5
  Author-email: Yunye <yunye@gwaslab.com>
6
6
  Project-URL: Homepage, https://cloufield.github.io/gwaslab/
@@ -50,7 +50,7 @@ Warning: Known issues of GWASLab are summarized in [https://cloufield.github.io/
50
50
  ### install via pip
51
51
 
52
52
  ```
53
- pip install gwaslab==3.4.40
53
+ pip install gwaslab==3.4.41
54
54
  ```
55
55
 
56
56
  ```python
@@ -89,7 +89,7 @@ Create a Python 3.9 environment and install gwaslab using pip:
89
89
  ```
90
90
  conda env create -n gwaslab_test -c conda-forge python=3.9
91
91
  conda activate gwaslab
92
- pip install gwaslab==3.4.40
92
+ pip install gwaslab==3.4.41
93
93
  ```
94
94
 
95
95
  or create a new environment using yml file [environment_3.4.40.yml](https://github.com/Cloufield/gwaslab/blob/main/environment_3.4.40.yml)
@@ -201,6 +201,9 @@ dependencies:
201
201
  ## Sample Data
202
202
  - Sample GWAS data used in GWASLab is obtained from: http://jenger.riken.jp/ (Suzuki, Ken, et al. "Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population." Nature genetics 51.3 (2019): 379-386.).
203
203
 
204
+ ## Acknowledgement
205
+
206
+ Thanks to @sup3rgiu, @soumickmj and @gmauro for their contributions to the source codes.
204
207
 
205
208
  ## Contacts
206
209
  * Github: [https://github.com/Cloufield/gwaslab](https://github.com/Cloufield/gwaslab)
{gwaslab-3.4.41.dist-info → gwaslab-3.4.42.dist-info}/RECORD RENAMED
@@ -1,44 +1,44 @@
1
1
  gwaslab/__init__.py,sha256=dFnrh4L620F5JirsSF98SmkuligA-fybIGdBF6r9Ims,2386
2
- gwaslab/bd_common_data.py,sha256=svW9UxpGyf46YXXAJ1lAZKjF7lnlM9WuRrSCZ3RhLUI,11883
2
+ gwaslab/bd_common_data.py,sha256=v98X3tdRNOVE2gCiSHkfyBb0pSIjTk5IFG8A725Oj3o,12639
3
3
  gwaslab/bd_config.py,sha256=TP-r-DPhJD3XnRYZbw9bQHXaDIkiRgK8bG9HCt-UaLc,580
4
4
  gwaslab/bd_download.py,sha256=cDDk2C5IvjeAzvPvVYGTkI4Ss33DUtEDjGo8eAbQRvY,15663
5
- gwaslab/bd_get_hapmap3.py,sha256=T3P65fIeNwhdlpdlMaggasFPJGTYMxVcip-IFl_yziE,3606
5
+ gwaslab/bd_get_hapmap3.py,sha256=asNjQYeGfQi8u3jnfenRvDdKMs5ptql5wpcUzqMlwUI,3937
6
6
  gwaslab/g_Log.py,sha256=C3Zv-_6c3C9ms8bgQ-ytplz22sjk7euqXYkWr9zNeAs,1573
7
7
  gwaslab/g_Phenotypes.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
8
- gwaslab/g_Sumstats.py,sha256=ja6MNR72-apIZX-dD2q82GHS4M8IC2AKRd4eADvhP90,33841
9
- gwaslab/g_SumstatsPair.py,sha256=MjuTVrluTWjUDFg4WitnzNzxNr9_HhffYBNHOrzpcJM,8803
8
+ gwaslab/g_Sumstats.py,sha256=GS0YUdvNYlwiR-mu6VJIv_JRqgBpHmTq9123XX5kiMI,35132
9
+ gwaslab/g_SumstatsPair.py,sha256=tbgT-_1CqDEw22s4LbVJWF3ChELxz0gy1DEBzLc9ODU,8833
10
10
  gwaslab/g_SumstatsT.py,sha256=u_DighLMnMxwTLnqm-B58pA0G6WXRj6pudPyKMVKjSU,2133
11
11
  gwaslab/g_Sumstats_summary.py,sha256=FECvvFXJVKaCX5dggBvvk9YvJ6AbdbcLfjltysX7wEE,6380
12
12
  gwaslab/g_meta.py,sha256=htWlgURWclm9R6UqFcX1a93WN27xny7lGUeyJZOtszQ,2583
13
13
  gwaslab/g_vchange_status.py,sha256=eX0jdIb6Spa07ZdpWNqUWqdVBWS0fuH2yrt4PDi3Res,1746
14
- gwaslab/g_version.py,sha256=0b32MxKT-3WtIPKUg-kMvOf3SjagvAb3ZOTHrLPkK8c,1818
14
+ gwaslab/g_version.py,sha256=sYIrfQwAxGSUHOGcP64nhQ71-Cgzax3Xs18GM0Os_9k,1818
15
15
  gwaslab/hm_casting.py,sha256=FqP4EQl83Q2OKLw004OgLIvUH795TVCGwziLk5jsHqY,11368
16
- gwaslab/hm_harmonize_sumstats.py,sha256=kRkb2shU_jov5vlesj1CWgLT4Jo4PiWRl-_aTU7x9Gc,47572
16
+ gwaslab/hm_harmonize_sumstats.py,sha256=n6aygO8V7MJaDgkNHozNzIsm_G8KcR70ukS-IOygw0E,67684
17
17
  gwaslab/hm_rsid_to_chrpos.py,sha256=ODWREO0jPN0RAfNzL5fRzSRANfhiksOvUVPuEsFZQqA,6552
18
18
  gwaslab/io_preformat_input.py,sha256=w62JLAr16Ru0EgUtBCEV2eXRO89OqhidQxwf2IPAM38,20014
19
19
  gwaslab/io_read_ldsc.py,sha256=8S9n4imgl4d0WPms_GYld-6uUM5z7iWGiCA-M814kzY,12123
20
- gwaslab/io_read_tabular.py,sha256=_gI0EA4CDecTPHTDp6hW2PesagYHHbBQvI_tW8U3Tc8,2366
21
- gwaslab/io_to_formats.py,sha256=bkk_ydigDyIO0_9YhBJ7axSeJRUkmhi1VE981OH8qM4,25690
22
- gwaslab/io_to_pickle.py,sha256=XmxhV5-38ED8aEyPYzsskv7HrxCyge9tHJ2F21QA8Ms,1824
20
+ gwaslab/io_read_tabular.py,sha256=EG-C6KhCutt4J4LlOMgXnqzJvU-EZXzVhMvaDFnHrMM,2380
21
+ gwaslab/io_to_formats.py,sha256=QuGWdvnAamaZAuhymj-0SuNBaKz1maTTyH396gvVaO8,29229
22
+ gwaslab/io_to_pickle.py,sha256=HhePU0VcaGni0HTNU0BqoRaOnrr0NOxotgY6ISdx3Ck,1833
23
23
  gwaslab/ldsc_irwls.py,sha256=83JbAMAhD0KOfpv4IJa6LgUDfQjp4XSJveTjnhCBJYQ,6142
24
24
  gwaslab/ldsc_jackknife.py,sha256=XrWHoKS_Xn9StG1I83S2vUMTertsb-GH-_gOFYUhLeU,17715
25
- gwaslab/ldsc_ldscore.py,sha256=UF4F5ZNC6TbGUWA0bk3tDnBWlCRHklvUXYhhNR8rWaY,14573
25
+ gwaslab/ldsc_ldscore.py,sha256=ZOxMvV3PhZzLsTmkKQqjabk_9PdrCTtPhbrdrpGmRAk,14580
26
26
  gwaslab/ldsc_parse.py,sha256=MBnfgcWlV4oHp9MoDRh1mpilaHhAR15Af77hMFn4-5k,10564
27
27
  gwaslab/ldsc_regressions.py,sha256=yzbGjgNV7u-SWXNPsh9S8y9mK97Bim_Nmad9G9V18ZU,30078
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  gwaslab/ldsc_sumstats.py,sha256=O0olsDxKlh1MJ1gAuEN1t40rxhajOEwOQ20ak7xoDrI,26245
29
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  gwaslab/qc_check_datatype.py,sha256=kW68uk4dTLOU2b1dHoVat6n0loundDysAjIqxsXW28Q,3379
30
- gwaslab/qc_fix_sumstats.py,sha256=a_maVwyz13rF8aywrIst4oon8DRAqMBXVt2WpswqeZw,87338
30
+ gwaslab/qc_fix_sumstats.py,sha256=Dp2HnVnqdO5aiXpLhnLsvL6XCKuC4Du2HJFEVIH2Ss0,87342
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  gwaslab/run_script.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
32
- gwaslab/util_ex_calculate_ldmatrix.py,sha256=fFee6GjoQP31y65hNgqrOTl5TPXBBraQKRdLQ3J9dj8,14594
33
- gwaslab/util_ex_calculate_prs.py,sha256=uOcMRWujEYMYGuO-qGe3okQJYizXGvqDcomXlzLvln8,9049
32
+ gwaslab/util_ex_calculate_ldmatrix.py,sha256=LpE__LoYRHLgVKlCHo6lYWlz9LEUVUDqYPEAP-Svbm0,14598
33
+ gwaslab/util_ex_calculate_prs.py,sha256=5l1eiZs8YwIpEgp7i3IurP8n5KwQM5awbG9fWSm4iT4,9053
34
34
  gwaslab/util_ex_gwascatalog.py,sha256=--Gde9HrsikfYTeFqSaYz0gUODr9wmv_gV6GZGNlElg,7688
35
35
  gwaslab/util_ex_ldproxyfinder.py,sha256=wWNW9wITWozj23gT41LR00WxU-rrHpGKbxs2H_3jEyM,9431
36
- gwaslab/util_ex_ldsc.py,sha256=C9zXhooT8xJ0aLa_itCv1NCBZidCTtpgglUZ1sZDpKc,16263
37
- gwaslab/util_ex_plink_filter.py,sha256=Ak09-tEIS_uq1OtiCmcDCXcEjzQHCEfp44AKkhgoOzY,1669
36
+ gwaslab/util_ex_ldsc.py,sha256=a-OwyWmDcyinTPRfCNSeNYm6beVsydFeYmRAXAPcRnI,18350
37
+ gwaslab/util_ex_plink_filter.py,sha256=pK1Yxtv9-J4rMOdVAG7VU9PktvI6-y4FxBiVEH0QuRs,1673
38
38
  gwaslab/util_ex_process_h5.py,sha256=ynFvo3zxgvOxWYL565v2IQf8P6iEuq7UlKQ_ULxrd6Y,2831
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39
  gwaslab/util_ex_process_ref.py,sha256=BwS4hmzIWdgmRY_yiG6RJQJHjYcOR-2yZX7kU3s8lPw,16552
40
40
  gwaslab/util_ex_run_2samplemr.py,sha256=5c0DGF694T9j0Y58L2I7pr1_Z1hfpaatIgix7P5oPA8,9127
41
- gwaslab/util_ex_run_clumping.py,sha256=jzGTQYZA02JeiK0vWseUS_Jq_UrWNRz1Q_qlbJP8AAg,7877
41
+ gwaslab/util_ex_run_clumping.py,sha256=Y8KeUKuSpGc1a8iI_VKUgVQpAVBd7O9F11p85jY4oW4,7868
42
42
  gwaslab/util_ex_run_coloc.py,sha256=u57h8wPbTCOf6aY5u5DpzK1gv7inuDT8a15UGo-1ras,6288
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43
  gwaslab/util_ex_run_susie.py,sha256=TXqiwBVq1io7XSlLF2_gNsYgxDLiKNnYE9pIjRWJ1Hc,5315
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  gwaslab/util_in_calculate_gc.py,sha256=MWOXVzJv7SZx4i2_ncRiqsiEOADc7EfghaUzgGy4jaE,2219
@@ -46,7 +46,7 @@ gwaslab/util_in_calculate_power.py,sha256=JfHJFg3tNF0f4NHgWlzVW2mSxCiP07mAHIyEfV
46
46
  gwaslab/util_in_convert_h2.py,sha256=a8Cbudt3xn9WP2bPc-7ysuowB-LYub8j8GeDXl7Lk7Q,6483
47
47
  gwaslab/util_in_correct_winnerscurse.py,sha256=Gp--yAQ8MMzdkWIvXP9C1BHVjZc-YzqHfYWhAj19w9w,2110
48
48
  gwaslab/util_in_fill_data.py,sha256=gdTwYA6FvBMnrtxAeL0lEj_Z0aGIoRNPScWDlJvZWeQ,14021
49
- gwaslab/util_in_filter_value.py,sha256=LPS4hpkgu-kMPybU1yd-5utCiuL0FDQ_6_l4E7zOdJ4,21469
49
+ gwaslab/util_in_filter_value.py,sha256=6yz3omukfqhmkfGZwGtr2BPQ6FcSTj4l6o7EhPMXRz0,22100
50
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  gwaslab/util_in_get_density.py,sha256=kpKXH69acMkeYVG5vs-VbJC3COhmuLBfYco-wuOxgjc,3934
51
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  gwaslab/util_in_get_sig.py,sha256=atyBJZCWGUSgy-nvIR8_a_isseq1nKhzTaRVG2LbKQk,37762
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  gwaslab/viz_aux_annotate_plot.py,sha256=R-1GT89E4NEBAMNTYzNawdi9rjQV5LCnODgnYOOKsys,32184
@@ -63,7 +63,7 @@ gwaslab/viz_plot_qqplot.py,sha256=psQgVpP29686CEZkzQz0iRbApzqy7aE3GGiBcazVvNw,72
63
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  gwaslab/viz_plot_regionalplot.py,sha256=PBIWkNj2fj-dRLKQJNpM8wor5jya2anqix0-UYLE0Is,37901
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  gwaslab/viz_plot_rg_heatmap.py,sha256=PidUsgOiEVt6MfBPCF3_yDhOEytZ-I1q-ZD6_0pFrV4,13713
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65
  gwaslab/viz_plot_stackedregional.py,sha256=EAHz5SZGengZ_pxcOg62ZRimGRz6_goQlp9MLCwmeZc,11890
66
- gwaslab/viz_plot_trumpetplot.py,sha256=36XKPBrS0lOTFs15oEJPgeNCUE17JNLhlT14SuwbTVw,37472
66
+ gwaslab/viz_plot_trumpetplot.py,sha256=ZHdc6WcVx0-oKoj88yglRkmB4bS9pOiEMcuwKW35Yvo,42672
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67
  gwaslab/data/formatbook.json,sha256=N2nJs80HH98Rsu9FxaSvIQO9J5yIV97WEtAKjRqYwiY,38207
68
68
  gwaslab/data/reference.json,sha256=k8AvvgDsuLxzv-NCJHWvTUZ5q_DLAFxs1Th3jtL313k,11441
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  gwaslab/data/chrx_par/chrx_par_hg19.bed.gz,sha256=LocZg_ozhZjQiIpgWCO4EYCW9xgkEKpRy1m-YdIpzQs,83
@@ -72,9 +72,9 @@ gwaslab/data/hapmap3_SNPs/hapmap3_db150_hg19.snplist.gz,sha256=qD9RsC5S2h6l-OdpW
72
72
  gwaslab/data/hapmap3_SNPs/hapmap3_db151_hg38.snplist.gz,sha256=Y8ZT2FIAhbhlgCJdE9qQVAiwnV_fcsPt72usBa7RSBM,10225828
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  gwaslab/data/high_ld/high_ld_hla_hg19.bed.gz,sha256=R7IkssKu0L4WwkU9SrS84xCMdrkkKL0gnTNO_OKbG0Y,219
74
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  gwaslab/data/high_ld/high_ld_hla_hg38.bed.gz,sha256=76CIU0pibDJ72Y6UY-TbIKE9gEPwTELAaIbCXyjm80Q,470
75
- gwaslab-3.4.41.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
76
- gwaslab-3.4.41.dist-info/LICENSE_before_v3.4.39,sha256=GhLOU_1UDEKeOacYhsRN_m9u-eIuVTazSndZPeNcTZA,1066
77
- gwaslab-3.4.41.dist-info/METADATA,sha256=NwSucspNMHqaf3mCFUz-L5RUgHXiHKSK99PZQymjTng,7605
78
- gwaslab-3.4.41.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
79
- gwaslab-3.4.41.dist-info/top_level.txt,sha256=PyY6hWtrALpv2MAN3kjkIAzJNmmBTH5a2risz9KwH08,8
80
- gwaslab-3.4.41.dist-info/RECORD,,
75
+ gwaslab-3.4.42.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
76
+ gwaslab-3.4.42.dist-info/LICENSE_before_v3.4.39,sha256=GhLOU_1UDEKeOacYhsRN_m9u-eIuVTazSndZPeNcTZA,1066
77
+ gwaslab-3.4.42.dist-info/METADATA,sha256=iqArSw_x7yXovyF9D-z3gt5fzskQSOVObXPWCrYIcsg,7714
78
+ gwaslab-3.4.42.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
79
+ gwaslab-3.4.42.dist-info/top_level.txt,sha256=PyY6hWtrALpv2MAN3kjkIAzJNmmBTH5a2risz9KwH08,8
80
+ gwaslab-3.4.42.dist-info/RECORD,,
{gwaslab-3.4.41.dist-info → gwaslab-3.4.42.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
1
1
  Wheel-Version: 1.0
2
- Generator: bdist_wheel (0.42.0)
2
+ Generator: bdist_wheel (0.43.0)
3
3
  Root-Is-Purelib: true
4
4
  Tag: py3-none-any
5
5