gwaslab 3.4.40__py3-none-any.whl → 3.4.42__py3-none-any.whl

gwaslab/viz_plot_trumpetplot.py

@@ -13,6 +13,7 @@ from gwaslab.util_in_get_sig import annogene
 from gwaslab.viz_aux_annotate_plot import annotate_single
 from gwaslab.viz_aux_reposition_text import adjust_text_position
 from gwaslab.viz_aux_save_figure import save_figure
+from gwaslab.viz_plot_mqqplot import _process_highlight
 from gwaslab.g_Log import Log
 from gwaslab.util_in_calculate_power import get_beta
 from gwaslab.util_in_calculate_power import get_power
@@ -49,6 +50,13 @@ def plottrumpet(mysumstats,
                 xlim=None,
                 markercolor="#597FBD",
                 hue=None,
+                highlight = None,
+                highlight_chrpos = False,
+                highlight_color="#CB132D",
+                highlight_windowkb = 500,
+                highlight_anno_args = None,
+                pinpoint= None,
+                pinpoint_color ="red",
                 scatter_args=None,
                 fontsize=15,
                 font_family="Arial",
@@ -106,7 +114,10 @@ def plottrumpet(mysumstats,
         scatter_args["hue"]=hue
     if markercolor is not None:
         scatter_args["color"]=markercolor
-    
+    if highlight is None:
+        highlight = list()
+    if pinpoint is None:
+        pinpoint = list()  
     #Checking columns#################################################################################################################
     log.write("Start to create trumpet plot...", verbose=verbose)
     
@@ -140,6 +151,10 @@ def plottrumpet(mysumstats,
     #loading columns #################################################################################################################
     cols_to_use = [snpid, beta, eaf, n, p]
     
+    if len(highlight)>0: 
+        cols_to_use.append(pos)
+        cols_to_use.append(chrom)
+    
     if anno is not None:
         if anno != "GENENAME":
             if anno!=True:
@@ -147,8 +162,8 @@ def plottrumpet(mysumstats,
                 if anno not in cols_to_use:
                     cols_to_use.append(anno)
         else:
-            cols_to_use.append(pos)
-            cols_to_use.append(chrom)
+            cols_to_use.append(pos) if pos not in cols_to_use else cols_to_use
+            cols_to_use.append(chrom) if chrom not in cols_to_use else cols_to_use
 
     if size != "ABS_BETA":
         if size not in cols_to_use:
@@ -211,6 +226,16 @@ def plottrumpet(mysumstats,
         output_hex_colors.append(mc.to_hex(rgba[i]))
     output_hex_colors
 
+    if len(highlight)>0:
+        sumstats["HUE"] = pd.NA
+        sumstats["HUE"] = sumstats["HUE"].astype("Int64")
+        sumstats = _process_highlight(sumstats=sumstats, 
+                                                    highlight=highlight, 
+                                                    highlight_chrpos=highlight_chrpos, 
+                                                    highlight_windowkb=highlight_windowkb, 
+                                                    snpid=snpid, 
+                                                    chrom=chrom, 
+                                                    pos=pos)
     ##################################################################################################
     fig, ax = plt.subplots(**figargs)
     
@@ -256,18 +281,104 @@ def plottrumpet(mysumstats,
     sumstats["ABS_BETA"] = sumstats[beta].abs()
 
     ##################################################################################################
-    
+    size_norm = (sumstats["ABS_BETA"].min(), sumstats["ABS_BETA"].max())
+    ## if highlight  ##################################################################################################
     dots = sns.scatterplot(data=sumstats,
                     x=maf,
                     y=beta,
                     size=size, 
                     ax=ax, 
                     sizes=sizes,
+                    size_norm=size_norm,
                     legend=True, 
                     edgecolor="black",
                     alpha=0.8,
+                    zorder=2,
                     **scatter_args)
     
+    if len(highlight) >0:
+        
+        legend = None
+        style=None
+        linewidth=0
+        edgecolor="black"
+
+        if pd.api.types.is_list_like(highlight[0]) and highlight_chrpos==False:
+            for i, highlight_set in enumerate(highlight):
+                scatter_args["color"]=highlight_color[i%len(highlight_color)]
+                log.write(" -Highlighting set {} target loci...".format(i+1),verbose=verbose)
+                sns.scatterplot(data=sumstats.loc[sumstats["HUE"]==i], x=maf,
+                    y=beta,
+                    legend=legend,
+                    style=style,
+                    size=size,
+                    sizes=sizes,
+                    size_norm=size_norm,
+                    linewidth=linewidth,
+                    zorder=3+i,
+                    ax=ax,edgecolor=edgecolor,**scatter_args)  
+
+        else:
+            log.write(" -Highlighting target loci...",verbose=verbose)
+            scatter_args["color"]=highlight_color
+            sns.scatterplot(data=sumstats.loc[sumstats["HUE"]==0], x=maf,
+                    y=beta,
+                legend=legend,
+                size=size,
+                sizes=sizes,
+                size_norm=size_norm,
+                zorder=3,
+                ax=ax,
+                edgecolor="black",
+                **scatter_args)  
+    ####################################################################################################################
+    if len(pinpoint)>0:
+        legend = None
+        style=None
+        linewidth=0
+        edgecolor="black"
+        if pd.api.types.is_list_like(pinpoint[0]):
+
+            for i, pinpoint_set in enumerate(pinpoint):
+                scatter_args["color"]=pinpoint_color[i%len(pinpoint_color)]
+                if sum(sumstats[snpid].isin(pinpoint_set))>0:
+                    to_pinpoint = sumstats.loc[sumstats[snpid].isin(pinpoint_set),:]
+                    log.write(" -Pinpointing set {} target vairants...".format(i+1),verbose=verbose)
+                    sns.scatterplot(data=to_pinpoint, 
+                    x=maf,
+                    y=beta,
+                    legend=legend,
+                    size=size,
+                    sizes=sizes,
+                    size_norm=size_norm,
+                    zorder=3,
+                    ax=ax,
+                    edgecolor="black",
+                    **scatter_args)  
+                    #ax.scatter(to_pinpoint[maf],to_pinpoint[beta],color=pinpoint_color[i%len(pinpoint_color)],zorder=100,s=to_pinpoint[size])
+                else:
+                    log.write(" -Target vairants to pinpoint were not found. Skip pinpointing process...",verbose=verbose)
+        else:
+            scatter_args["color"]=pinpoint_color
+            if sum(sumstats[snpid].isin(pinpoint))>0:
+                to_pinpoint = sumstats.loc[sumstats[snpid].isin(pinpoint),:]
+                log.write(" -Pinpointing target vairants...",verbose=verbose)
+                sns.scatterplot(data=to_pinpoint, x=maf,
+                    y=beta,
+                    legend=legend,
+                    size=size,
+                    sizes=sizes,
+                    size_norm=size_norm,
+                    zorder=3,
+                    ax=ax,
+                    edgecolor="black",
+                    **scatter_args)  
+                #ax.scatter(to_pinpoint[maf],to_pinpoint[beta],color=pinpoint_color[i%len(pinpoint_color)],zorder=100,s=to_pinpoint[size])
+            else:
+                log.write(" -Target vairants to pinpoint were not found. Skip pinpointing process...",verbose=verbose)
+    
+    ####################################################################################################################
+    
     #second_legend = ax.legend(title="Power", loc="upper right",fontsize =fontsize,title_fontsize=fontsize)
     
     h,l = ax.get_legend_handles_labels()

{gwaslab-3.4.40.dist-info → gwaslab-3.4.42.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: gwaslab
-Version: 3.4.40
+Version: 3.4.42
 Summary: A collection of handy tools for GWAS SumStats
 Author-email: Yunye <yunye@gwaslab.com>
 Project-URL: Homepage, https://cloufield.github.io/gwaslab/
@@ -25,10 +25,10 @@ Requires-Dist: scikit-allel >=1.3.5
 Requires-Dist: pyensembl ==2.2.3
 Requires-Dist: gtfparse ==1.3.0
 
-<img width="600" alt="image" src="https://user-images.githubusercontent.com/40289485/197167760-5f761f5e-5856-4b27-a540-8b9cd90bdadb.png">
-
 # GWASLab
 
+<img width="600" alt="image" src="https://user-images.githubusercontent.com/40289485/197167760-5f761f5e-5856-4b27-a540-8b9cd90bdadb.png">
+
 ![badge](https://img.shields.io/pypi/v/gwaslab)
 [![Downloads](https://static.pepy.tech/badge/gwaslab)](https://pepy.tech/project/gwaslab)
 ![badge_pip](https://img.shields.io/pypi/dm/gwaslab)
@@ -40,15 +40,19 @@ Requires-Dist: gtfparse ==1.3.0
 * Sumstats-specific manipulations are designed as methods of a Python object, `gwaslab.Sumstats`.
 
 Please check GWASLab documentation at [https://cloufield.github.io/gwaslab/](https://cloufield.github.io/gwaslab/)
+
 Note: GWASLab is being updated very frequently for now. I will release the first stable version soon! Please stay tuned.
 
+Warning: Known issues of GWASLab are summarized in [https://cloufield.github.io/gwaslab/KnownIssues/](https://cloufield.github.io/gwaslab/KnownIssues/) .
+
 ## Install
 
+### install via pip
+
 ```
-pip install gwaslab==3.4.39
+pip install gwaslab==3.4.41
 ```
 
-
 ```python
 import gwaslab as gl
 # load plink2 output
@@ -78,6 +82,27 @@ mysumstats.plot_mqq()
 ...
 ```
 
+### install in conda environment
+
+Create a Python 3.9 environment and install gwaslab using pip:
+
+```
+conda env create -n gwaslab_test -c conda-forge python=3.9
+conda activate gwaslab
+pip install gwaslab==3.4.41
+```
+
+or create a new environment using yml file [environment_3.4.40.yml](https://github.com/Cloufield/gwaslab/blob/main/environment_3.4.40.yml)
+
+```
+conda env create -n gwaslab -f environment_3.4.40.yml
+```
+
+
+### install using docker
+
+A docker file is available [here](https://github.com/Cloufield/gwaslab/blob/main/docker/Dockerfile) for building local images.
+
 ## Functions
 
 ### Loading and Formatting
@@ -176,6 +201,9 @@ dependencies:
 ## Sample Data
 - Sample GWAS data used in GWASLab is obtained from: http://jenger.riken.jp/ (Suzuki, Ken, et al. "Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population." Nature genetics 51.3 (2019): 379-386.).
 
+## Acknowledgement
+
+Thanks to @sup3rgiu, @soumickmj and @gmauro for their contributions to the source codes.
 
 ## Contacts
 * Github: [https://github.com/Cloufield/gwaslab](https://github.com/Cloufield/gwaslab)

{gwaslab-3.4.40.dist-info → gwaslab-3.4.42.dist-info}/RECORD

@@ -1,44 +1,44 @@
 gwaslab/__init__.py,sha256=dFnrh4L620F5JirsSF98SmkuligA-fybIGdBF6r9Ims,2386
-gwaslab/bd_common_data.py,sha256=svW9UxpGyf46YXXAJ1lAZKjF7lnlM9WuRrSCZ3RhLUI,11883
+gwaslab/bd_common_data.py,sha256=v98X3tdRNOVE2gCiSHkfyBb0pSIjTk5IFG8A725Oj3o,12639
 gwaslab/bd_config.py,sha256=TP-r-DPhJD3XnRYZbw9bQHXaDIkiRgK8bG9HCt-UaLc,580
 gwaslab/bd_download.py,sha256=cDDk2C5IvjeAzvPvVYGTkI4Ss33DUtEDjGo8eAbQRvY,15663
-gwaslab/bd_get_hapmap3.py,sha256=T3P65fIeNwhdlpdlMaggasFPJGTYMxVcip-IFl_yziE,3606
+gwaslab/bd_get_hapmap3.py,sha256=asNjQYeGfQi8u3jnfenRvDdKMs5ptql5wpcUzqMlwUI,3937
 gwaslab/g_Log.py,sha256=C3Zv-_6c3C9ms8bgQ-ytplz22sjk7euqXYkWr9zNeAs,1573
 gwaslab/g_Phenotypes.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-gwaslab/g_Sumstats.py,sha256=ja6MNR72-apIZX-dD2q82GHS4M8IC2AKRd4eADvhP90,33841
-gwaslab/g_SumstatsPair.py,sha256=MjuTVrluTWjUDFg4WitnzNzxNr9_HhffYBNHOrzpcJM,8803
+gwaslab/g_Sumstats.py,sha256=GS0YUdvNYlwiR-mu6VJIv_JRqgBpHmTq9123XX5kiMI,35132
+gwaslab/g_SumstatsPair.py,sha256=tbgT-_1CqDEw22s4LbVJWF3ChELxz0gy1DEBzLc9ODU,8833
 gwaslab/g_SumstatsT.py,sha256=u_DighLMnMxwTLnqm-B58pA0G6WXRj6pudPyKMVKjSU,2133
 gwaslab/g_Sumstats_summary.py,sha256=FECvvFXJVKaCX5dggBvvk9YvJ6AbdbcLfjltysX7wEE,6380
 gwaslab/g_meta.py,sha256=htWlgURWclm9R6UqFcX1a93WN27xny7lGUeyJZOtszQ,2583
 gwaslab/g_vchange_status.py,sha256=eX0jdIb6Spa07ZdpWNqUWqdVBWS0fuH2yrt4PDi3Res,1746
-gwaslab/g_version.py,sha256=QOyZXQKLwgrbV4hMFzIs2qB32TiOgU6rPR1ni1Mustk,1818
+gwaslab/g_version.py,sha256=sYIrfQwAxGSUHOGcP64nhQ71-Cgzax3Xs18GM0Os_9k,1818
 gwaslab/hm_casting.py,sha256=FqP4EQl83Q2OKLw004OgLIvUH795TVCGwziLk5jsHqY,11368
-gwaslab/hm_harmonize_sumstats.py,sha256=kRkb2shU_jov5vlesj1CWgLT4Jo4PiWRl-_aTU7x9Gc,47572
+gwaslab/hm_harmonize_sumstats.py,sha256=n6aygO8V7MJaDgkNHozNzIsm_G8KcR70ukS-IOygw0E,67684
 gwaslab/hm_rsid_to_chrpos.py,sha256=ODWREO0jPN0RAfNzL5fRzSRANfhiksOvUVPuEsFZQqA,6552
 gwaslab/io_preformat_input.py,sha256=w62JLAr16Ru0EgUtBCEV2eXRO89OqhidQxwf2IPAM38,20014
 gwaslab/io_read_ldsc.py,sha256=8S9n4imgl4d0WPms_GYld-6uUM5z7iWGiCA-M814kzY,12123
-gwaslab/io_read_tabular.py,sha256=_gI0EA4CDecTPHTDp6hW2PesagYHHbBQvI_tW8U3Tc8,2366
-gwaslab/io_to_formats.py,sha256=bkk_ydigDyIO0_9YhBJ7axSeJRUkmhi1VE981OH8qM4,25690
-gwaslab/io_to_pickle.py,sha256=XmxhV5-38ED8aEyPYzsskv7HrxCyge9tHJ2F21QA8Ms,1824
+gwaslab/io_read_tabular.py,sha256=EG-C6KhCutt4J4LlOMgXnqzJvU-EZXzVhMvaDFnHrMM,2380
+gwaslab/io_to_formats.py,sha256=QuGWdvnAamaZAuhymj-0SuNBaKz1maTTyH396gvVaO8,29229
+gwaslab/io_to_pickle.py,sha256=HhePU0VcaGni0HTNU0BqoRaOnrr0NOxotgY6ISdx3Ck,1833
 gwaslab/ldsc_irwls.py,sha256=83JbAMAhD0KOfpv4IJa6LgUDfQjp4XSJveTjnhCBJYQ,6142
 gwaslab/ldsc_jackknife.py,sha256=XrWHoKS_Xn9StG1I83S2vUMTertsb-GH-_gOFYUhLeU,17715
-gwaslab/ldsc_ldscore.py,sha256=UF4F5ZNC6TbGUWA0bk3tDnBWlCRHklvUXYhhNR8rWaY,14573
+gwaslab/ldsc_ldscore.py,sha256=ZOxMvV3PhZzLsTmkKQqjabk_9PdrCTtPhbrdrpGmRAk,14580
 gwaslab/ldsc_parse.py,sha256=MBnfgcWlV4oHp9MoDRh1mpilaHhAR15Af77hMFn4-5k,10564
 gwaslab/ldsc_regressions.py,sha256=yzbGjgNV7u-SWXNPsh9S8y9mK97Bim_Nmad9G9V18ZU,30078
 gwaslab/ldsc_sumstats.py,sha256=O0olsDxKlh1MJ1gAuEN1t40rxhajOEwOQ20ak7xoDrI,26245
 gwaslab/qc_check_datatype.py,sha256=kW68uk4dTLOU2b1dHoVat6n0loundDysAjIqxsXW28Q,3379
-gwaslab/qc_fix_sumstats.py,sha256=a_maVwyz13rF8aywrIst4oon8DRAqMBXVt2WpswqeZw,87338
+gwaslab/qc_fix_sumstats.py,sha256=Dp2HnVnqdO5aiXpLhnLsvL6XCKuC4Du2HJFEVIH2Ss0,87342
 gwaslab/run_script.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-gwaslab/util_ex_calculate_ldmatrix.py,sha256=fFee6GjoQP31y65hNgqrOTl5TPXBBraQKRdLQ3J9dj8,14594
-gwaslab/util_ex_calculate_prs.py,sha256=uOcMRWujEYMYGuO-qGe3okQJYizXGvqDcomXlzLvln8,9049
+gwaslab/util_ex_calculate_ldmatrix.py,sha256=LpE__LoYRHLgVKlCHo6lYWlz9LEUVUDqYPEAP-Svbm0,14598
+gwaslab/util_ex_calculate_prs.py,sha256=5l1eiZs8YwIpEgp7i3IurP8n5KwQM5awbG9fWSm4iT4,9053
 gwaslab/util_ex_gwascatalog.py,sha256=--Gde9HrsikfYTeFqSaYz0gUODr9wmv_gV6GZGNlElg,7688
 gwaslab/util_ex_ldproxyfinder.py,sha256=wWNW9wITWozj23gT41LR00WxU-rrHpGKbxs2H_3jEyM,9431
-gwaslab/util_ex_ldsc.py,sha256=C9zXhooT8xJ0aLa_itCv1NCBZidCTtpgglUZ1sZDpKc,16263
-gwaslab/util_ex_plink_filter.py,sha256=Ak09-tEIS_uq1OtiCmcDCXcEjzQHCEfp44AKkhgoOzY,1669
+gwaslab/util_ex_ldsc.py,sha256=a-OwyWmDcyinTPRfCNSeNYm6beVsydFeYmRAXAPcRnI,18350
+gwaslab/util_ex_plink_filter.py,sha256=pK1Yxtv9-J4rMOdVAG7VU9PktvI6-y4FxBiVEH0QuRs,1673
 gwaslab/util_ex_process_h5.py,sha256=ynFvo3zxgvOxWYL565v2IQf8P6iEuq7UlKQ_ULxrd6Y,2831
 gwaslab/util_ex_process_ref.py,sha256=BwS4hmzIWdgmRY_yiG6RJQJHjYcOR-2yZX7kU3s8lPw,16552
 gwaslab/util_ex_run_2samplemr.py,sha256=5c0DGF694T9j0Y58L2I7pr1_Z1hfpaatIgix7P5oPA8,9127
-gwaslab/util_ex_run_clumping.py,sha256=jzGTQYZA02JeiK0vWseUS_Jq_UrWNRz1Q_qlbJP8AAg,7877
+gwaslab/util_ex_run_clumping.py,sha256=Y8KeUKuSpGc1a8iI_VKUgVQpAVBd7O9F11p85jY4oW4,7868
 gwaslab/util_ex_run_coloc.py,sha256=u57h8wPbTCOf6aY5u5DpzK1gv7inuDT8a15UGo-1ras,6288
 gwaslab/util_ex_run_susie.py,sha256=TXqiwBVq1io7XSlLF2_gNsYgxDLiKNnYE9pIjRWJ1Hc,5315
 gwaslab/util_in_calculate_gc.py,sha256=MWOXVzJv7SZx4i2_ncRiqsiEOADc7EfghaUzgGy4jaE,2219
@@ -46,7 +46,7 @@ gwaslab/util_in_calculate_power.py,sha256=JfHJFg3tNF0f4NHgWlzVW2mSxCiP07mAHIyEfV
 gwaslab/util_in_convert_h2.py,sha256=a8Cbudt3xn9WP2bPc-7ysuowB-LYub8j8GeDXl7Lk7Q,6483
 gwaslab/util_in_correct_winnerscurse.py,sha256=Gp--yAQ8MMzdkWIvXP9C1BHVjZc-YzqHfYWhAj19w9w,2110
 gwaslab/util_in_fill_data.py,sha256=gdTwYA6FvBMnrtxAeL0lEj_Z0aGIoRNPScWDlJvZWeQ,14021
-gwaslab/util_in_filter_value.py,sha256=LPS4hpkgu-kMPybU1yd-5utCiuL0FDQ_6_l4E7zOdJ4,21469
+gwaslab/util_in_filter_value.py,sha256=6yz3omukfqhmkfGZwGtr2BPQ6FcSTj4l6o7EhPMXRz0,22100
 gwaslab/util_in_get_density.py,sha256=kpKXH69acMkeYVG5vs-VbJC3COhmuLBfYco-wuOxgjc,3934
 gwaslab/util_in_get_sig.py,sha256=atyBJZCWGUSgy-nvIR8_a_isseq1nKhzTaRVG2LbKQk,37762
 gwaslab/viz_aux_annotate_plot.py,sha256=R-1GT89E4NEBAMNTYzNawdi9rjQV5LCnODgnYOOKsys,32184
@@ -60,10 +60,10 @@ gwaslab/viz_plot_miamiplot.py,sha256=rCFEp7VNuVqeBBG3WRkmFAtFklbF79BvIQQYiSY70VY
 gwaslab/viz_plot_miamiplot2.py,sha256=SWv82D8UBbREKsk8EoKth-2w68l6FbXyVLsb_E1hh8o,15882
 gwaslab/viz_plot_mqqplot.py,sha256=xIx-m8IP0GAAKuIoiAbzxl3fkUDEEunczo6dVEZ3KRY,61671
 gwaslab/viz_plot_qqplot.py,sha256=psQgVpP29686CEZkzQz0iRbApzqy7aE3GGiBcazVvNw,7247
-gwaslab/viz_plot_regionalplot.py,sha256=1p7oLX9Y9qYLQdg61nRu3BsJYSvwpt3-B3fStNhhhRI,37899
+gwaslab/viz_plot_regionalplot.py,sha256=PBIWkNj2fj-dRLKQJNpM8wor5jya2anqix0-UYLE0Is,37901
 gwaslab/viz_plot_rg_heatmap.py,sha256=PidUsgOiEVt6MfBPCF3_yDhOEytZ-I1q-ZD6_0pFrV4,13713
 gwaslab/viz_plot_stackedregional.py,sha256=EAHz5SZGengZ_pxcOg62ZRimGRz6_goQlp9MLCwmeZc,11890
-gwaslab/viz_plot_trumpetplot.py,sha256=36XKPBrS0lOTFs15oEJPgeNCUE17JNLhlT14SuwbTVw,37472
+gwaslab/viz_plot_trumpetplot.py,sha256=ZHdc6WcVx0-oKoj88yglRkmB4bS9pOiEMcuwKW35Yvo,42672
 gwaslab/data/formatbook.json,sha256=N2nJs80HH98Rsu9FxaSvIQO9J5yIV97WEtAKjRqYwiY,38207
 gwaslab/data/reference.json,sha256=k8AvvgDsuLxzv-NCJHWvTUZ5q_DLAFxs1Th3jtL313k,11441
 gwaslab/data/chrx_par/chrx_par_hg19.bed.gz,sha256=LocZg_ozhZjQiIpgWCO4EYCW9xgkEKpRy1m-YdIpzQs,83
@@ -72,9 +72,9 @@ gwaslab/data/hapmap3_SNPs/hapmap3_db150_hg19.snplist.gz,sha256=qD9RsC5S2h6l-OdpW
 gwaslab/data/hapmap3_SNPs/hapmap3_db151_hg38.snplist.gz,sha256=Y8ZT2FIAhbhlgCJdE9qQVAiwnV_fcsPt72usBa7RSBM,10225828
 gwaslab/data/high_ld/high_ld_hla_hg19.bed.gz,sha256=R7IkssKu0L4WwkU9SrS84xCMdrkkKL0gnTNO_OKbG0Y,219
 gwaslab/data/high_ld/high_ld_hla_hg38.bed.gz,sha256=76CIU0pibDJ72Y6UY-TbIKE9gEPwTELAaIbCXyjm80Q,470
-gwaslab-3.4.40.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
-gwaslab-3.4.40.dist-info/LICENSE_before_v3.4.39,sha256=GhLOU_1UDEKeOacYhsRN_m9u-eIuVTazSndZPeNcTZA,1066
-gwaslab-3.4.40.dist-info/METADATA,sha256=j-yBPsv7W81riSyutboPv8wVjm051_Py2MBV85--WpM,6854
-gwaslab-3.4.40.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
-gwaslab-3.4.40.dist-info/top_level.txt,sha256=PyY6hWtrALpv2MAN3kjkIAzJNmmBTH5a2risz9KwH08,8
-gwaslab-3.4.40.dist-info/RECORD,,
+gwaslab-3.4.42.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+gwaslab-3.4.42.dist-info/LICENSE_before_v3.4.39,sha256=GhLOU_1UDEKeOacYhsRN_m9u-eIuVTazSndZPeNcTZA,1066
+gwaslab-3.4.42.dist-info/METADATA,sha256=iqArSw_x7yXovyF9D-z3gt5fzskQSOVObXPWCrYIcsg,7714
+gwaslab-3.4.42.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+gwaslab-3.4.42.dist-info/top_level.txt,sha256=PyY6hWtrALpv2MAN3kjkIAzJNmmBTH5a2risz9KwH08,8
+gwaslab-3.4.42.dist-info/RECORD,,

{gwaslab-3.4.40.dist-info → gwaslab-3.4.42.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.42.0)
+Generator: bdist_wheel (0.43.0)
 Root-Is-Purelib: true
 Tag: py3-none-any