gwaslab 3.4.14__py3-none-any.whl → 3.4.16__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

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Files changed (20) hide show
  1. gwaslab/Sumstats.py +6 -4
  2. gwaslab/__init__.py +3 -1
  3. gwaslab/annotateplot.py +2 -2
  4. gwaslab/calculate_power.py +119 -42
  5. gwaslab/compare_effect.py +83 -17
  6. gwaslab/download.py +19 -4
  7. gwaslab/fill.py +183 -57
  8. gwaslab/miamiplot.py +25 -10
  9. gwaslab/mqqplot.py +4 -3
  10. gwaslab/plotrg.py +208 -75
  11. gwaslab/regionalplot.py +21 -3
  12. gwaslab/retrievedata.py +49 -18
  13. gwaslab/to_pickle.py +12 -0
  14. gwaslab/trumpetplot.py +0 -0
  15. gwaslab/version.py +3 -3
  16. {gwaslab-3.4.14.dist-info → gwaslab-3.4.16.dist-info}/METADATA +2 -2
  17. {gwaslab-3.4.14.dist-info → gwaslab-3.4.16.dist-info}/RECORD +20 -19
  18. {gwaslab-3.4.14.dist-info → gwaslab-3.4.16.dist-info}/LICENSE +0 -0
  19. {gwaslab-3.4.14.dist-info → gwaslab-3.4.16.dist-info}/WHEEL +0 -0
  20. {gwaslab-3.4.14.dist-info → gwaslab-3.4.16.dist-info}/top_level.txt +0 -0
{gwaslab-3.4.14.dist-info → gwaslab-3.4.16.dist-info}/RECORD RENAMED
@@ -1,17 +1,17 @@
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  gwaslab/CommonData.py,sha256=tcT6g2NCJfYMoNK4OGe9MYedO374DqHSY0-rBg32L8o,11660
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  gwaslab/Log.py,sha256=ILl6fPs_zZBlS2j1eZtgvWE2HGzON5EYDEGb6GZWzs8,758
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  gwaslab/Phenotypes.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- gwaslab/Sumstats.py,sha256=QNs1SS56ez709srRXcFGuHIqUGb877dBtdeni7C57eU,27798
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+ gwaslab/Sumstats.py,sha256=f-8yAZiktiQxv-nokoJTUGEBlpxTuWspwu-DZ65XzPc,27929
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  gwaslab/Sumstatssummary.py,sha256=Q69702tABxTVk6QIbqQ4k6eSujhXr_MVVQ5saOdEhlk,6367
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- gwaslab/__init__.py,sha256=w388QRh8ikkBp3pYwUod85Q6zMC7WrmkwIUTA873uQM,1578
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+ gwaslab/__init__.py,sha256=NIYPYIYZxqoq06D_yoDnFKjfiguRvBmnk1ojygnaoy4,1669
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  gwaslab/annotategenename.py,sha256=SKvvH50jXKGdAy-kPxlFuUkk0q6blDJbeXf4uZjZu1A,1249
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- gwaslab/annotateplot.py,sha256=R8Tu5PQTfwHlK49yiJc35CUAsyTX_hrGu7xb9LxzaxQ,30247
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+ gwaslab/annotateplot.py,sha256=eXo5Qn6rK1f9GX5XqzACPYKoUdoverKRukbbiO60rkE,30261
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  gwaslab/calculate_gc.py,sha256=7eJlKzX3TdiBWS8kpAkQe1wbui50ge2cmZgyloyQbJI,2159
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- gwaslab/calculate_power.py,sha256=2Id09sB7wtUAezaCF0RToACh2tNvjB4x76w-kuzfudA,1937
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- gwaslab/compare_effect.py,sha256=EnCV21mfJ7Jl2i5HKMowKsjFpcJyGLd6wkAvCsk5bPw,43912
10
+ gwaslab/calculate_power.py,sha256=OYychyTqBWR0KbNWyRz6sxNxMaMXETtLrdkXPpuo7zE,4400
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+ gwaslab/compare_effect.py,sha256=Gl43HqkoXXTDWAT1GNGY0scEc9OdgnsKmzIiWqPAi8I,45945
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  gwaslab/config.py,sha256=TP-r-DPhJD3XnRYZbw9bQHXaDIkiRgK8bG9HCt-UaLc,580
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- gwaslab/download.py,sha256=bHgl38cFhrTGZGTOSAN5-5YmmYK7wftgVj9PI_b93V0,14545
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- gwaslab/fill.py,sha256=r_4gqzZm9q2spvQU9_8OA39uN24t3VAR9Ac4BDGl7vU,8165
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+ gwaslab/download.py,sha256=vMWB3yY_SSMGjGWLXd0kvKI8lms3si3LJO8zaq7Hw5A,15067
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+ gwaslab/fill.py,sha256=2mIAGzOgtAxxgGx828ugpTtiFUDpJOXYpDk4922Grz0,13834
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  gwaslab/filtervalue.py,sha256=pU-m_UcYJL1sE4b3rRjip97b7IsCtQRm1yR4oY5opFY,13151
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  gwaslab/fixdata.py,sha256=ne9gGS25IJM8ZBWjEsoPsVEs9YFJnmU5wc9xOsaz-AE,71752
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  gwaslab/get_hapmap3.py,sha256=vU_5aRqWpIgaK4luddBCziGkIZBnUeO5-GWmm0SdLiU,2032
@@ -21,22 +21,23 @@ gwaslab/gwascatalog.py,sha256=LYmSpORCcWso3jpSzxAvoHQ4Tu6Ncpgm7glPmw0L6Xk,7235
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  gwaslab/h2_conversion.py,sha256=79Kc0o1Ik4PsRgS01Loc6wT0uaczpWoZDJ2nSq2_bvI,2377
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  gwaslab/meta.py,sha256=kIDfLSC2TFidCX_yJdNk2ITfBhWtfrd2J-Q2a_FODns,2191
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  gwaslab/metaanalysis.py,sha256=MuFaxzj9vnebut4pWUg29pGxMcPzWcqbEm3q7t-BUpQ,6770
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- gwaslab/miamiplot.py,sha256=e97meEUaxEJpB2X-0VZIm8ou9cB2DBv4Kh-miDHRPr8,25681
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- gwaslab/mqqplot.py,sha256=5qry-XlZ2zo027K-xSIDOuHFcFCkZMSo9DWbUCi-Nlg,41263
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- gwaslab/plotrg.py,sha256=t-61fNTUGBJnFaGjSiHfKBVHf24bhUZaP5r858d2RwU,6832
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+ gwaslab/miamiplot.py,sha256=A0BFw_hDH9EGasebw9rbgcnugvrrW3TESMYSTVF8H6Q,26245
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+ gwaslab/mqqplot.py,sha256=KWHQZ6ZSB7ty3wYap0nj47-OdfuS6QkyRyH0wiLO9gw,41346
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+ gwaslab/plotrg.py,sha256=X7_45qiDdbv06xjdpcS3W6K55unnsD5Yvp-M68OCObg,13544
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  gwaslab/preformat_input.py,sha256=5e83HENakrR7bwI6O2iGNh-RBGA_D9V_dkry38PAaKU,17944
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  gwaslab/processdata.py,sha256=hJQNkrR4IOLw1pZK_OA1v1iNwOmhvlCW9meGnpP5vfU,573
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  gwaslab/qqplot.py,sha256=Wnv62zB7GHARg0rpAGUmZLy5_ktCO7Ds2PM_rKDqmqw,6133
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  gwaslab/quickfix.py,sha256=A2VKHKpcBLYild5E632o-TN3guvr1D1SKwyJswFbjVc,17669
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  gwaslab/read_ldsc.py,sha256=B6KOSDNrzjXoqfX6eXAa41gNM3wK8Yz9HWcb6i5A7YQ,4188
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- gwaslab/regionalplot.py,sha256=i3YDVa_fbizZq7i5E9ZT46LRX6LVT3doU1jgrNmOBPQ,35203
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- gwaslab/retrievedata.py,sha256=Oy-HNBwqmpoNc1n0uEHXsM9-YqwBNMBnzaQP2hVDCKw,33846
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+ gwaslab/regionalplot.py,sha256=745118EfVCvr5V498kfWPKj_afT3xAeoaz38iZW8X4g,36016
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+ gwaslab/retrievedata.py,sha256=WaONGzIvn0rO95Ru7ICLVf7QBw2ASBzh4wySXLJGNGI,35292
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  gwaslab/rsID2chrpos.py,sha256=-pKhY654zS4uULW7FP4yGHNy3e9Wc2ujc1VLBaoUO5A,6564
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  gwaslab/textreposition.py,sha256=yHoWhQPfSKVfEjlqPAs6wexRz3EfGhqfP7e6WeqO0xM,2485
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  gwaslab/to_formats.py,sha256=LDpYJjQj2gmvgVYXVcHwvqWgsC68hbWOVHepiEb9YEc,20357
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- gwaslab/to_pickle.py,sha256=oylDDM0xZEnBElQc9-R11t0GWy2aw_pJ8EyWbNwf4M0,856
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+ gwaslab/to_pickle.py,sha256=OOoLXiC0Wemyb7jwyeUNU7xMJTAOUT2XDXrd-sxUFFg,1175
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+ gwaslab/trumpetplot.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  gwaslab/vchangestatus.py,sha256=id3oUsnMrZth7E-jTQHUfNx2UE0b1ABLO9ajbuTMcjY,1527
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- gwaslab/version.py,sha256=-333gmyLKDUGhloER8BRrXBbXn5hX7E5jnh-cINk5W0,386
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+ gwaslab/version.py,sha256=JQUDzBC67HUiB7dZaEpDZDRqNGRDkMUgxDUmOSytvcA,386
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  gwaslab/winnerscurse.py,sha256=o7CjUwLp4B_60yrntV76ESNaoPcl-HPOzSw9cYWzpW4,2050
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  gwaslab/data/formatbook.json,sha256=eDWGgefgDCRk5GnxKVmgNpg2NVOI1-3lv2fY-O5k5Dg,19889
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  gwaslab/data/reference.json,sha256=CwtJSamQ7JwufytHTdyvNPyFc8AyXISsKWr-3fsc3-4,2862
@@ -46,8 +47,8 @@ gwaslab/data/hapmap3_SNPs/hapmap3_db150_hg19.snplist.gz,sha256=qD9RsC5S2h6l-OdpW
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  gwaslab/data/hapmap3_SNPs/hapmap3_db151_hg38.snplist.gz,sha256=Y8ZT2FIAhbhlgCJdE9qQVAiwnV_fcsPt72usBa7RSBM,10225828
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  gwaslab/data/high_ld/high_ld_hla_hg19.bed.gz,sha256=R7IkssKu0L4WwkU9SrS84xCMdrkkKL0gnTNO_OKbG0Y,219
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  gwaslab/data/high_ld/high_ld_hla_hg38.bed.gz,sha256=76CIU0pibDJ72Y6UY-TbIKE9gEPwTELAaIbCXyjm80Q,470
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- gwaslab-3.4.14.dist-info/LICENSE,sha256=GhLOU_1UDEKeOacYhsRN_m9u-eIuVTazSndZPeNcTZA,1066
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- gwaslab-3.4.14.dist-info/METADATA,sha256=Z09CmzJt5Gtzptnk9f4mGysgZEx41MROTe7NhZDLp4Q,6350
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- gwaslab-3.4.14.dist-info/WHEEL,sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18,92
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- gwaslab-3.4.14.dist-info/top_level.txt,sha256=PyY6hWtrALpv2MAN3kjkIAzJNmmBTH5a2risz9KwH08,8
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- gwaslab-3.4.14.dist-info/RECORD,,
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+ gwaslab-3.4.16.dist-info/LICENSE,sha256=GhLOU_1UDEKeOacYhsRN_m9u-eIuVTazSndZPeNcTZA,1066
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+ gwaslab-3.4.16.dist-info/METADATA,sha256=py8Go066oH_HpLAoipmirmc3w5QNtJwToJT68zvhp-I,6350
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+ gwaslab-3.4.16.dist-info/WHEEL,sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18,92
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+ gwaslab-3.4.16.dist-info/top_level.txt,sha256=PyY6hWtrALpv2MAN3kjkIAzJNmmBTH5a2risz9KwH08,8
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+ gwaslab-3.4.16.dist-info/RECORD,,