guts-base 1.0.0__py3-none-any.whl → 1.0.1__py3-none-any.whl

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Files changed (8) hide show
  1. guts_base/__init__.py +1 -1
  2. guts_base/sim/ecx.py +7 -2
  3. {guts_base-1.0.0.dist-info → guts_base-1.0.1.dist-info}/METADATA +1 -1
  4. {guts_base-1.0.0.dist-info → guts_base-1.0.1.dist-info}/RECORD +8 -8
  5. {guts_base-1.0.0.dist-info → guts_base-1.0.1.dist-info}/WHEEL +0 -0
  6. {guts_base-1.0.0.dist-info → guts_base-1.0.1.dist-info}/entry_points.txt +0 -0
  7. {guts_base-1.0.0.dist-info → guts_base-1.0.1.dist-info}/licenses/LICENSE +0 -0
  8. {guts_base-1.0.0.dist-info → guts_base-1.0.1.dist-info}/top_level.txt +0 -0
guts_base/__init__.py CHANGED
@@ -4,7 +4,7 @@ from . import data
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  from . import prob
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  from . import plot
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- __version__ = "1.0.0"
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+ __version__ = "1.0.1"
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  from .sim import (
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  GutsBase,
guts_base/sim/ecx.py CHANGED
@@ -51,12 +51,17 @@ class ECxEstimator:
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  # original observations (especially time), except the ID, which is overwritten
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  # and taken from the x_in dataset
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  pseudo_obs = self.sim.observations.isel(id=[0])
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- pseudo_obs = pseudo_obs.drop(["exposure","survival"])
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+ pseudo_obs = pseudo_obs.drop([v for v in pseudo_obs.data_vars.keys()])
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  pseudo_obs["id"] = x_in["id"]
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  self.sim.config.data_structure.survival.observed = False
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  self.sim.observations = pseudo_obs
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+ # overwrite x_in to make sure that parse_input takes x_in from exposure and
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+ # does not use the string that is tied to another data variable which was
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+ # originally present
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+ self.sim.config.simulation.x_in = ["exposure=exposure"]
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+
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  # ensure correct coordinate order with x_in and raise errors early
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  self.sim.model_parameters["x_in"] = self.sim.parse_input("x_in", x_in)
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@@ -69,7 +74,7 @@ class ECxEstimator:
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  self.sim.coordinates["time"], np.array(time, ndmin=1)
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  ]))
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- self.sim.model_parameters["y0"] = self.sim.parse_input("y0", drop_dims="time")
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+ self.sim.model_parameters["y0"] = self.sim.parse_input("y0", drop_dims=["time"])
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  self.sim.dispatch_constructor()
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  self.results = pd.Series({
{guts_base-1.0.0.dist-info → guts_base-1.0.1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: guts_base
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- Version: 1.0.0
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+ Version: 1.0.1
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  Summary: Basic GUTS model implementation in pymob
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  Author-email: Florian Schunck <fluncki@protonmail.com>
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  License: GNU GENERAL PUBLIC LICENSE
{guts_base-1.0.0.dist-info → guts_base-1.0.1.dist-info}/RECORD RENAMED
@@ -1,4 +1,4 @@
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- guts_base/__init__.py,sha256=ulUbdy3eks46Fl2VAVRRymWiAmzDOj_pqRCBpItSnMI,227
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+ guts_base/__init__.py,sha256=AqEsieZlFfc_SqQ4wN-pCXvqRCkjfF35TSOWiO_9hco,227
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  guts_base/mod.py,sha256=AzOCg1A8FP5EtVfp-66HT7G7h_wnHkenieaxTc9qCyk,5796
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  guts_base/plot.py,sha256=rjIzyPUikOtubjWI5mX_ZY8ARWl2NiHDmwAZAdoaPS8,5693
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  guts_base/prob.py,sha256=ITwo5dAGMHr5xTldilHMbKU6AFsWo4_ZwbfaXh97Gew,5443
@@ -13,13 +13,13 @@ guts_base/data/utils.py,sha256=u3gGDJK15MfRUP4iIxsS-I1oqxD2qH_ugsT7o_Eac18,236
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  guts_base/sim/__init__.py,sha256=5VgzsOXjMsylfWy4neeovZBG1w6G6p_tFaIfhnIeLPM,415
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  guts_base/sim/base.py,sha256=7u7gj6HQSCtFUXrrX-ngfWsWnFEMk5NrDVJH0CIolAs,28960
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  guts_base/sim/constructors.py,sha256=Kz9FHIH3EHsSIKd9sQgHa3eveniFifFlk1Hf-QR69Pg,875
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- guts_base/sim/ecx.py,sha256=F2ImQbtJjP57udebY2c_vtOf4gB3yKSje0P8s9VIbtQ,18858
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+ guts_base/sim/ecx.py,sha256=peO93pKcQwF5eULo5BdUl4KLnXzrTfvRGI8qsbAYQKU,19137
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  guts_base/sim/mempy.py,sha256=IHd87UrmdXpC7y7q0IjYQJH075frjbp2a-dMVBeqZ0U,10164
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  guts_base/sim/report.py,sha256=swTAp1qNTjDwWh-YOq_TLqtSxjQvjdwaNVHpEW8kXK4,1959
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  guts_base/sim/utils.py,sha256=Qj_FPH6kywVxOwgCerS7w5CyuYR9HKmvBWFpmxwDFgk,256
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- guts_base-1.0.0.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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- guts_base-1.0.0.dist-info/METADATA,sha256=g8sJM482NTXEGv7dJKbLVujO_sRzkpg3fuHadmDMdhc,45406
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- guts_base-1.0.0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- guts_base-1.0.0.dist-info/entry_points.txt,sha256=icsHzG2jQ90ZS7XvLsI5Qj0-qGuPv2T0RBVN5daGCPU,183
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- guts_base-1.0.0.dist-info/top_level.txt,sha256=PxhBgUd4r39W_VI4FyJjARwKbV5_glgCVnd6v_zAGdE,10
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- guts_base-1.0.0.dist-info/RECORD,,
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+ guts_base-1.0.1.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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+ guts_base-1.0.1.dist-info/METADATA,sha256=vYcnGPbbGHEu-1yfF_OWliNRkQ4Ly3IDDK9Khs1DlCc,45406
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+ guts_base-1.0.1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ guts_base-1.0.1.dist-info/entry_points.txt,sha256=icsHzG2jQ90ZS7XvLsI5Qj0-qGuPv2T0RBVN5daGCPU,183
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+ guts_base-1.0.1.dist-info/top_level.txt,sha256=PxhBgUd4r39W_VI4FyJjARwKbV5_glgCVnd6v_zAGdE,10
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+ guts_base-1.0.1.dist-info/RECORD,,