gsMap3D 0.1.0a2__py3-none-any.whl → 0.1.0a3__py3-none-any.whl

gsMap/config/utils.py

@@ -234,6 +234,10 @@ def process_h5ad_inputs(config, input_options):
                     sample_h5ad_dict[sample_name] = h5ad_path
 
         elif processing_type == 'list':
+            # Handle single string or Path input by wrapping in a list
+            if isinstance(field_value, (str, Path)):
+                field_value = [field_value]
+
             logger.info(f"Using {option_name} with {len(field_value)} files")
             for h5ad_path in field_value:
                 h5ad_path = Path(h5ad_path)

gsMap/pipeline/__init__.py

@@ -0,0 +1,9 @@
+"""
+gsMap pipeline module.
+
+This module provides high-level pipeline functions for running gsMap analyses.
+"""
+
+from gsMap.pipeline.quick_mode import run_quick_mode
+
+__all__ = ["run_quick_mode"]

{gsmap3d-0.1.0a2.dist-info → gsmap3d-0.1.0a3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: gsMap3D
-Version: 0.1.0a2
+Version: 0.1.0a3
 Summary: Genetically informed spatial mapping of cells for complex traits
 Project-URL: Home, https://github.com/Ganten-Hornby/gsMap3D
 Project-URL: Documentation, https://yanglab.westlake.edu.cn/gsmap3d/docs

{gsmap3d-0.1.0a2.dist-info → gsmap3d-0.1.0a3.dist-info}/RECORD

@@ -17,7 +17,7 @@ gsMap/config/ldscore_config.py,sha256=yntZPspjcPbvrwhYNZ6WkAGJiQifOULKJBZtqVSlh-
 gsMap/config/quick_mode_config.py,sha256=JkUjb0p-SqkxyPTbKebvJhHrTzFFud8MRwkJZUkctzY,9001
 gsMap/config/report_config.py,sha256=9N-JiGFfJ3Lly8J9a1PpmCRUyBfFFijIp_X6iODkUdU,2730
 gsMap/config/spatial_ldsc_config.py,sha256=5idEw6IyL52ANC8SrPR29lC65xySjPV0-H8x-t1PTwE,13012
-gsMap/config/utils.py,sha256=LuZsVQFj7gPRD-KByBmncR6HzCqfJP7_w7kwS1fLjTU,12070
+gsMap/config/utils.py,sha256=wWuqm-7Kfy5cW-S53cGHr-vfY5c388A4Pm0x2EzmPK0,12239
 gsMap/find_latent/__init__.py,sha256=bgXUn8hd9RAZwR4tA8JJQ9b751dDlLC4K-9GuEr11Q4,117
 gsMap/find_latent/find_latent_representation.py,sha256=zzMLKDWTpE1zKZ1jPUNfS3atTf7RhTDrdeuLHC0hRn8,11566
 gsMap/find_latent/st_process.py,sha256=C5Cpa5Q1gvl4iZ0BUd1OS58z6AHhEak_Y-hE39oom8c,29706
@@ -43,6 +43,7 @@ gsMap/ldscore/constants.py,sha256=I8jiwmS64V0HvfwMPPZjSvdFr5Ruqox_F6jolYGgqvs,21
 gsMap/ldscore/io.py,sha256=ufrJd39NAZ1nGVhkYpfPZ7Ne_JYzhO6F9muk4_5fHnM,9119
 gsMap/ldscore/mapping.py,sha256=6UgZ3HpYnLDTVJTuy4uZAik1Ifmwc2_tZlJxNUrJbsw,11374
 gsMap/ldscore/pipeline.py,sha256=YQf6RJlVe1rjWl6o1ADGSLbQsFfizzzx-Jsc_4onIuM,24217
+gsMap/pipeline/__init__.py,sha256=FY6wJBV5Pj-Rb_EJV7lkvDwlQGeiibKLZ7sSf5mqu8U,195
 gsMap/pipeline/quick_mode.py,sha256=sPutxA94jYvWpg_zjtuDkZryDXGJlKITeuzGcId_oys,5174
 gsMap/report/__init__.py,sha256=Bo80Y_4o6w4Ag1ZA5NQAE2NJ6MNmsiw7FWp1tB80GCQ,74
 gsMap/report/diagnosis.py,sha256=RYCRM0-nrR0olYQKHwpH8ygN0df9WXUEyE2wYWbPtl0,13931
@@ -67,8 +68,8 @@ gsMap/utils/jackknife.py,sha256=w_qMj9GlqViouHuOw1U80N6doWuCTXuPoAVU4P-5mm8,1767
 gsMap/utils/manhattan_plot.py,sha256=fi-ee9pyXuJOu9VYsAJCNDGQSc86ZLDBIwNotUVdxhc,26509
 gsMap/utils/regression_read.py,sha256=aHU44SdQyzMR7OcbxrmS8aNbv8jKT0rmjaf11joox34,5697
 gsMap/utils/torch_utils.py,sha256=baHIoAlBcfEvoGOM2sH-oQLKVo5V0M5ZqzObgjm2I40,580
-gsmap3d-0.1.0a2.dist-info/METADATA,sha256=W9R3Z_yNuE0VRfTBRf4zRHnZs3Hi485pXQzX5yw4hio,7581
-gsmap3d-0.1.0a2.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
-gsmap3d-0.1.0a2.dist-info/entry_points.txt,sha256=EQ0WSo2RzyouAf3_mtECypKTd4TIrIMUZM1iRsDRPd0,40
-gsmap3d-0.1.0a2.dist-info/licenses/LICENSE,sha256=F9Vd0M0bhtsefCFMCTzsR1n-sy6UhBa8OWk41HT_Rf8,1069
-gsmap3d-0.1.0a2.dist-info/RECORD,,
+gsmap3d-0.1.0a3.dist-info/METADATA,sha256=5BTJEwuz7KXgxbJMII-17vbz-netNEf-K-jEPTCnnLM,7581
+gsmap3d-0.1.0a3.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
+gsmap3d-0.1.0a3.dist-info/entry_points.txt,sha256=EQ0WSo2RzyouAf3_mtECypKTd4TIrIMUZM1iRsDRPd0,40
+gsmap3d-0.1.0a3.dist-info/licenses/LICENSE,sha256=F9Vd0M0bhtsefCFMCTzsR1n-sy6UhBa8OWk41HT_Rf8,1069
+gsmap3d-0.1.0a3.dist-info/RECORD,,