graphiti-core 0.21.0rc6__py3-none-any.whl → 0.30.0rc0__py3-none-any.whl

graphiti_core/utils/maintenance/dedup_helpers.py

@@ -0,0 +1,257 @@
+"""
+Copyright 2024, Zep Software, Inc.
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+"""
+
+from __future__ import annotations
+
+import math
+import re
+from collections import defaultdict
+from collections.abc import Iterable
+from dataclasses import dataclass
+from functools import lru_cache
+from hashlib import blake2b
+from typing import TYPE_CHECKING
+
+if TYPE_CHECKING:
+    from graphiti_core.nodes import EntityNode
+
+_NAME_ENTROPY_THRESHOLD = 1.5
+_MIN_NAME_LENGTH = 6
+_MIN_TOKEN_COUNT = 2
+_FUZZY_JACCARD_THRESHOLD = 0.9
+_MINHASH_PERMUTATIONS = 32
+_MINHASH_BAND_SIZE = 4
+
+
+def _normalize_string_exact(name: str) -> str:
+    """Lowercase text and collapse whitespace so equal names map to the same key."""
+    normalized = re.sub(r'[\s]+', ' ', name.lower())
+    return normalized.strip()
+
+
+def _normalize_name_for_fuzzy(name: str) -> str:
+    """Produce a fuzzier form that keeps alphanumerics and apostrophes for n-gram shingles."""
+    normalized = re.sub(r"[^a-z0-9' ]", ' ', _normalize_string_exact(name))
+    normalized = normalized.strip()
+    return re.sub(r'[\s]+', ' ', normalized)
+
+
+def _name_entropy(normalized_name: str) -> float:
+    """Approximate text specificity using Shannon entropy over characters.
+
+    We strip spaces, count how often each character appears, and sum
+    probability * -log2(probability). Short or repetitive names yield low
+    entropy, which signals we should defer resolution to the LLM instead of
+    trusting fuzzy similarity.
+    """
+    if not normalized_name:
+        return 0.0
+
+    counts: dict[str, int] = {}
+    for char in normalized_name.replace(' ', ''):
+        counts[char] = counts.get(char, 0) + 1
+
+    total = sum(counts.values())
+    if total == 0:
+        return 0.0
+
+    entropy = 0.0
+    for count in counts.values():
+        probability = count / total
+        entropy -= probability * math.log2(probability)
+
+    return entropy
+
+
+def _has_high_entropy(normalized_name: str) -> bool:
+    """Filter out very short or low-entropy names that are unreliable for fuzzy matching."""
+    token_count = len(normalized_name.split())
+    if len(normalized_name) < _MIN_NAME_LENGTH and token_count < _MIN_TOKEN_COUNT:
+        return False
+
+    return _name_entropy(normalized_name) >= _NAME_ENTROPY_THRESHOLD
+
+
+def _shingles(normalized_name: str) -> set[str]:
+    """Create 3-gram shingles from the normalized name for MinHash calculations."""
+    cleaned = normalized_name.replace(' ', '')
+    if len(cleaned) < 2:
+        return {cleaned} if cleaned else set()
+
+    return {cleaned[i : i + 3] for i in range(len(cleaned) - 2)}
+
+
+def _hash_shingle(shingle: str, seed: int) -> int:
+    """Generate a deterministic 64-bit hash for a shingle given the permutation seed."""
+    digest = blake2b(f'{seed}:{shingle}'.encode(), digest_size=8)
+    return int.from_bytes(digest.digest(), 'big')
+
+
+def _minhash_signature(shingles: Iterable[str]) -> tuple[int, ...]:
+    """Compute the MinHash signature for the shingle set across predefined permutations."""
+    if not shingles:
+        return tuple()
+
+    seeds = range(_MINHASH_PERMUTATIONS)
+    signature: list[int] = []
+    for seed in seeds:
+        min_hash = min(_hash_shingle(shingle, seed) for shingle in shingles)
+        signature.append(min_hash)
+
+    return tuple(signature)
+
+
+def _lsh_bands(signature: Iterable[int]) -> list[tuple[int, ...]]:
+    """Split the MinHash signature into fixed-size bands for locality-sensitive hashing."""
+    signature_list = list(signature)
+    if not signature_list:
+        return []
+
+    bands: list[tuple[int, ...]] = []
+    for start in range(0, len(signature_list), _MINHASH_BAND_SIZE):
+        band = tuple(signature_list[start : start + _MINHASH_BAND_SIZE])
+        if len(band) == _MINHASH_BAND_SIZE:
+            bands.append(band)
+    return bands
+
+
+def _jaccard_similarity(a: set[str], b: set[str]) -> float:
+    """Return the Jaccard similarity between two shingle sets, handling empty edge cases."""
+    if not a and not b:
+        return 1.0
+    if not a or not b:
+        return 0.0
+
+    intersection = len(a.intersection(b))
+    union = len(a.union(b))
+    return intersection / union if union else 0.0
+
+
+@lru_cache(maxsize=512)
+def _cached_shingles(name: str) -> set[str]:
+    """Cache shingle sets per normalized name to avoid recomputation within a worker."""
+    return _shingles(name)
+
+
+@dataclass
+class DedupCandidateIndexes:
+    """Precomputed lookup structures that drive entity deduplication heuristics."""
+
+    existing_nodes: list[EntityNode]
+    nodes_by_uuid: dict[str, EntityNode]
+    normalized_existing: defaultdict[str, list[EntityNode]]
+    shingles_by_candidate: dict[str, set[str]]
+    lsh_buckets: defaultdict[tuple[int, tuple[int, ...]], list[str]]
+
+
+@dataclass
+class DedupResolutionState:
+    """Mutable resolution bookkeeping shared across deterministic and LLM passes."""
+
+    resolved_nodes: list[EntityNode | None]
+    uuid_map: dict[str, str]
+    unresolved_indices: list[int]
+
+
+def _build_candidate_indexes(existing_nodes: list[EntityNode]) -> DedupCandidateIndexes:
+    """Precompute exact and fuzzy lookup structures once per dedupe run."""
+    normalized_existing: defaultdict[str, list[EntityNode]] = defaultdict(list)
+    nodes_by_uuid: dict[str, EntityNode] = {}
+    shingles_by_candidate: dict[str, set[str]] = {}
+    lsh_buckets: defaultdict[tuple[int, tuple[int, ...]], list[str]] = defaultdict(list)
+
+    for candidate in existing_nodes:
+        normalized = _normalize_string_exact(candidate.name)
+        normalized_existing[normalized].append(candidate)
+        nodes_by_uuid[candidate.uuid] = candidate
+
+        shingles = _cached_shingles(_normalize_name_for_fuzzy(candidate.name))
+        shingles_by_candidate[candidate.uuid] = shingles
+
+        signature = _minhash_signature(shingles)
+        for band_index, band in enumerate(_lsh_bands(signature)):
+            lsh_buckets[(band_index, band)].append(candidate.uuid)
+
+    return DedupCandidateIndexes(
+        existing_nodes=existing_nodes,
+        nodes_by_uuid=nodes_by_uuid,
+        normalized_existing=normalized_existing,
+        shingles_by_candidate=shingles_by_candidate,
+        lsh_buckets=lsh_buckets,
+    )
+
+
+def _resolve_with_similarity(
+    extracted_nodes: list[EntityNode],
+    indexes: DedupCandidateIndexes,
+    state: DedupResolutionState,
+) -> None:
+    """Attempt deterministic resolution using exact name hits and fuzzy MinHash comparisons."""
+    for idx, node in enumerate(extracted_nodes):
+        normalized_exact = _normalize_string_exact(node.name)
+        normalized_fuzzy = _normalize_name_for_fuzzy(node.name)
+
+        if not _has_high_entropy(normalized_fuzzy):
+            state.unresolved_indices.append(idx)
+            continue
+
+        existing_matches = indexes.normalized_existing.get(normalized_exact, [])
+        if len(existing_matches) == 1:
+            match = existing_matches[0]
+            state.resolved_nodes[idx] = match
+            state.uuid_map[node.uuid] = match.uuid
+            continue
+        if len(existing_matches) > 1:
+            state.unresolved_indices.append(idx)
+            continue
+
+        shingles = _cached_shingles(normalized_fuzzy)
+        signature = _minhash_signature(shingles)
+        candidate_ids: set[str] = set()
+        for band_index, band in enumerate(_lsh_bands(signature)):
+            candidate_ids.update(indexes.lsh_buckets.get((band_index, band), []))
+
+        best_candidate: EntityNode | None = None
+        best_score = 0.0
+        for candidate_id in candidate_ids:
+            candidate_shingles = indexes.shingles_by_candidate.get(candidate_id, set())
+            score = _jaccard_similarity(shingles, candidate_shingles)
+            if score > best_score:
+                best_score = score
+                best_candidate = indexes.nodes_by_uuid.get(candidate_id)
+
+        if best_candidate is not None and best_score >= _FUZZY_JACCARD_THRESHOLD:
+            state.resolved_nodes[idx] = best_candidate
+            state.uuid_map[node.uuid] = best_candidate.uuid
+            continue
+
+        state.unresolved_indices.append(idx)
+
+
+__all__ = [
+    'DedupCandidateIndexes',
+    'DedupResolutionState',
+    '_normalize_string_exact',
+    '_normalize_name_for_fuzzy',
+    '_has_high_entropy',
+    '_minhash_signature',
+    '_lsh_bands',
+    '_jaccard_similarity',
+    '_cached_shingles',
+    '_FUZZY_JACCARD_THRESHOLD',
+    '_build_candidate_indexes',
+    '_resolve_with_similarity',
+]

graphiti_core/utils/maintenance/edge_operations.py

@@ -41,6 +41,7 @@ from graphiti_core.search.search_config import SearchResults
 from graphiti_core.search.search_config_recipes import EDGE_HYBRID_SEARCH_RRF
 from graphiti_core.search.search_filters import SearchFilters
 from graphiti_core.utils.datetime_utils import ensure_utc, utc_now
+from graphiti_core.utils.maintenance.dedup_helpers import _normalize_string_exact
 
 logger = logging.getLogger(__name__)
 
@@ -397,6 +398,19 @@ async def resolve_extracted_edge(
     if len(related_edges) == 0 and len(existing_edges) == 0:
         return extracted_edge, [], []
 
+    # Fast path: if the fact text and endpoints already exist verbatim, reuse the matching edge.
+    normalized_fact = _normalize_string_exact(extracted_edge.fact)
+    for edge in related_edges:
+        if (
+            edge.source_node_uuid == extracted_edge.source_node_uuid
+            and edge.target_node_uuid == extracted_edge.target_node_uuid
+            and _normalize_string_exact(edge.fact) == normalized_fact
+        ):
+            resolved = edge
+            if episode is not None and episode.uuid not in resolved.episodes:
+                resolved.episodes.append(episode.uuid)
+            return resolved, [], []
+
     start = time()
 
     # Prepare context for LLM

graphiti_core/utils/maintenance/node_operations.py

@@ -24,7 +24,12 @@ from graphiti_core.graphiti_types import GraphitiClients
 from graphiti_core.helpers import MAX_REFLEXION_ITERATIONS, semaphore_gather
 from graphiti_core.llm_client import LLMClient
 from graphiti_core.llm_client.config import ModelSize
-from graphiti_core.nodes import EntityNode, EpisodeType, EpisodicNode, create_entity_node_embeddings
+from graphiti_core.nodes import (
+    EntityNode,
+    EpisodeType,
+    EpisodicNode,
+    create_entity_node_embeddings,
+)
 from graphiti_core.prompts import prompt_library
 from graphiti_core.prompts.dedupe_nodes import NodeDuplicate, NodeResolutions
 from graphiti_core.prompts.extract_nodes import (
@@ -38,7 +43,15 @@ from graphiti_core.search.search_config import SearchResults
 from graphiti_core.search.search_config_recipes import NODE_HYBRID_SEARCH_RRF
 from graphiti_core.search.search_filters import SearchFilters
 from graphiti_core.utils.datetime_utils import utc_now
-from graphiti_core.utils.maintenance.edge_operations import filter_existing_duplicate_of_edges
+from graphiti_core.utils.maintenance.dedup_helpers import (
+    DedupCandidateIndexes,
+    DedupResolutionState,
+    _build_candidate_indexes,
+    _resolve_with_similarity,
+)
+from graphiti_core.utils.maintenance.edge_operations import (
+    filter_existing_duplicate_of_edges,
+)
 
 logger = logging.getLogger(__name__)
 
@@ -119,11 +132,13 @@ async def extract_nodes(
             )
         elif episode.source == EpisodeType.text:
             llm_response = await llm_client.generate_response(
-                prompt_library.extract_nodes.extract_text(context), response_model=ExtractedEntities
+                prompt_library.extract_nodes.extract_text(context),
+                response_model=ExtractedEntities,
             )
         elif episode.source == EpisodeType.json:
             llm_response = await llm_client.generate_response(
-                prompt_library.extract_nodes.extract_json(context), response_model=ExtractedEntities
+                prompt_library.extract_nodes.extract_json(context),
+                response_model=ExtractedEntities,
             )
 
         response_object = ExtractedEntities(**llm_response)
@@ -181,17 +196,12 @@ async def extract_nodes(
     return extracted_nodes
 
 
-async def resolve_extracted_nodes(
+async def _collect_candidate_nodes(
     clients: GraphitiClients,
     extracted_nodes: list[EntityNode],
-    episode: EpisodicNode | None = None,
-    previous_episodes: list[EpisodicNode] | None = None,
-    entity_types: dict[str, type[BaseModel]] | None = None,
-    existing_nodes_override: list[EntityNode] | None = None,
-) -> tuple[list[EntityNode], dict[str, str], list[tuple[EntityNode, EntityNode]]]:
-    llm_client = clients.llm_client
-    driver = clients.driver
-
+    existing_nodes_override: list[EntityNode] | None,
+) -> list[EntityNode]:
+    """Search per extracted name and return unique candidates with overrides honored in order."""
     search_results: list[SearchResults] = await semaphore_gather(
         *[
             search(
@@ -205,33 +215,40 @@ async def resolve_extracted_nodes(
         ]
     )
 
-    candidate_nodes: list[EntityNode] = (
-        [node for result in search_results for node in result.nodes]
-        if existing_nodes_override is None
-        else existing_nodes_override
-    )
+    candidate_nodes: list[EntityNode] = [node for result in search_results for node in result.nodes]
 
-    existing_nodes_dict: dict[str, EntityNode] = {node.uuid: node for node in candidate_nodes}
+    if existing_nodes_override is not None:
+        candidate_nodes.extend(existing_nodes_override)
 
-    existing_nodes: list[EntityNode] = list(existing_nodes_dict.values())
+    seen_candidate_uuids: set[str] = set()
+    ordered_candidates: list[EntityNode] = []
+    for candidate in candidate_nodes:
+        if candidate.uuid in seen_candidate_uuids:
+            continue
+        seen_candidate_uuids.add(candidate.uuid)
+        ordered_candidates.append(candidate)
 
-    existing_nodes_context = (
-        [
-            {
-                **{
-                    'idx': i,
-                    'name': candidate.name,
-                    'entity_types': candidate.labels,
-                },
-                **candidate.attributes,
-            }
-            for i, candidate in enumerate(existing_nodes)
-        ],
-    )
+    return ordered_candidates
+
+
+async def _resolve_with_llm(
+    llm_client: LLMClient,
+    extracted_nodes: list[EntityNode],
+    indexes: DedupCandidateIndexes,
+    state: DedupResolutionState,
+    ensure_ascii: bool,
+    episode: EpisodicNode | None,
+    previous_episodes: list[EpisodicNode] | None,
+    entity_types: dict[str, type[BaseModel]] | None,
+) -> None:
+    """Escalate unresolved nodes to the dedupe prompt so the LLM can select or reject duplicates."""
+    if not state.unresolved_indices:
+        return
 
     entity_types_dict: dict[str, type[BaseModel]] = entity_types if entity_types is not None else {}
 
-    # Prepare context for LLM
+    llm_extracted_nodes = [extracted_nodes[i] for i in state.unresolved_indices]
+
     extracted_nodes_context = [
         {
             'id': i,
@@ -242,17 +259,29 @@ async def resolve_extracted_nodes(
             ).__doc__
             or 'Default Entity Type',
         }
-        for i, node in enumerate(extracted_nodes)
+        for i, node in enumerate(llm_extracted_nodes)
+    ]
+
+    existing_nodes_context = [
+        {
+            **{
+                'idx': i,
+                'name': candidate.name,
+                'entity_types': candidate.labels,
+            },
+            **candidate.attributes,
+        }
+        for i, candidate in enumerate(indexes.existing_nodes)
     ]
 
     context = {
         'extracted_nodes': extracted_nodes_context,
         'existing_nodes': existing_nodes_context,
         'episode_content': episode.content if episode is not None else '',
-        'previous_episodes': [ep.content for ep in previous_episodes]
-        if previous_episodes is not None
-        else [],
-        'ensure_ascii': clients.ensure_ascii,
+        'previous_episodes': (
+            [ep.content for ep in previous_episodes] if previous_episodes is not None else []
+        ),
+        'ensure_ascii': ensure_ascii,
     }
 
     llm_response = await llm_client.generate_response(
@@ -262,33 +291,81 @@ async def resolve_extracted_nodes(
 
     node_resolutions: list[NodeDuplicate] = NodeResolutions(**llm_response).entity_resolutions
 
-    resolved_nodes: list[EntityNode] = []
-    uuid_map: dict[str, str] = {}
-    node_duplicates: list[tuple[EntityNode, EntityNode]] = []
     for resolution in node_resolutions:
-        resolution_id: int = resolution.id
+        relative_id: int = resolution.id
         duplicate_idx: int = resolution.duplicate_idx
 
-        extracted_node = extracted_nodes[resolution_id]
+        original_index = state.unresolved_indices[relative_id]
+        extracted_node = extracted_nodes[original_index]
 
         resolved_node = (
-            existing_nodes[duplicate_idx]
-            if 0 <= duplicate_idx < len(existing_nodes)
+            indexes.existing_nodes[duplicate_idx]
+            if 0 <= duplicate_idx < len(indexes.existing_nodes)
             else extracted_node
         )
 
-        # resolved_node.name = resolution.get('name')
+        state.resolved_nodes[original_index] = resolved_node
+        state.uuid_map[extracted_node.uuid] = resolved_node.uuid
 
-        resolved_nodes.append(resolved_node)
-        uuid_map[extracted_node.uuid] = resolved_node.uuid
 
-    logger.debug(f'Resolved nodes: {[(n.name, n.uuid) for n in resolved_nodes]}')
+async def resolve_extracted_nodes(
+    clients: GraphitiClients,
+    extracted_nodes: list[EntityNode],
+    episode: EpisodicNode | None = None,
+    previous_episodes: list[EpisodicNode] | None = None,
+    entity_types: dict[str, type[BaseModel]] | None = None,
+    existing_nodes_override: list[EntityNode] | None = None,
+) -> tuple[list[EntityNode], dict[str, str], list[tuple[EntityNode, EntityNode]]]:
+    """Search for existing nodes, resolve deterministic matches, then escalate holdouts to the LLM dedupe prompt."""
+    llm_client = clients.llm_client
+    driver = clients.driver
+    existing_nodes = await _collect_candidate_nodes(
+        clients,
+        extracted_nodes,
+        existing_nodes_override,
+    )
+
+    indexes: DedupCandidateIndexes = _build_candidate_indexes(existing_nodes)
+
+    state = DedupResolutionState(
+        resolved_nodes=[None] * len(extracted_nodes),
+        uuid_map={},
+        unresolved_indices=[],
+    )
+    node_duplicates: list[tuple[EntityNode, EntityNode]] = []
+
+    _resolve_with_similarity(extracted_nodes, indexes, state)
+
+    await _resolve_with_llm(
+        llm_client,
+        extracted_nodes,
+        indexes,
+        state,
+        clients.ensure_ascii,
+        episode,
+        previous_episodes,
+        entity_types,
+    )
+
+    for idx, node in enumerate(extracted_nodes):
+        if state.resolved_nodes[idx] is None:
+            state.resolved_nodes[idx] = node
+            state.uuid_map[node.uuid] = node.uuid
+
+    logger.debug(
+        'Resolved nodes: %s',
+        [(node.name, node.uuid) for node in state.resolved_nodes if node is not None],
+    )
 
     new_node_duplicates: list[
         tuple[EntityNode, EntityNode]
     ] = await filter_existing_duplicate_of_edges(driver, node_duplicates)
 
-    return resolved_nodes, uuid_map, new_node_duplicates
+    return (
+        [node for node in state.resolved_nodes if node is not None],
+        state.uuid_map,
+        new_node_duplicates,
+    )
 
 
 async def extract_attributes_from_nodes(
@@ -307,9 +384,11 @@ async def extract_attributes_from_nodes(
                 node,
                 episode,
                 previous_episodes,
-                entity_types.get(next((item for item in node.labels if item != 'Entity'), ''))
-                if entity_types is not None
-                else None,
+                (
+                    entity_types.get(next((item for item in node.labels if item != 'Entity'), ''))
+                    if entity_types is not None
+                    else None
+                ),
                 clients.ensure_ascii,
             )
             for node in nodes
@@ -339,18 +418,18 @@ async def extract_attributes_from_node(
     attributes_context: dict[str, Any] = {
         'node': node_context,
         'episode_content': episode.content if episode is not None else '',
-        'previous_episodes': [ep.content for ep in previous_episodes]
-        if previous_episodes is not None
-        else [],
+        'previous_episodes': (
+            [ep.content for ep in previous_episodes] if previous_episodes is not None else []
+        ),
         'ensure_ascii': ensure_ascii,
     }
 
     summary_context: dict[str, Any] = {
         'node': node_context,
         'episode_content': episode.content if episode is not None else '',
-        'previous_episodes': [ep.content for ep in previous_episodes]
-        if previous_episodes is not None
-        else [],
+        'previous_episodes': (
+            [ep.content for ep in previous_episodes] if previous_episodes is not None else []
+        ),
         'ensure_ascii': ensure_ascii,
     }
 

{graphiti_core-0.21.0rc6.dist-info → graphiti_core-0.30.0rc0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: graphiti-core
-Version: 0.21.0rc6
+Version: 0.30.0rc0
 Summary: A temporal graph building library
 Project-URL: Homepage, https://help.getzep.com/graphiti/graphiti/overview
 Project-URL: Repository, https://github.com/getzep/graphiti

{graphiti_core-0.21.0rc6.dist-info → graphiti_core-0.30.0rc0.dist-info}/RECORD

@@ -68,13 +68,14 @@ graphiti_core/utils/bulk_utils.py,sha256=9XWXqjxiu2ydKMLKQRTbvzO6cO1o1HRjjpmaf5Y
 graphiti_core/utils/datetime_utils.py,sha256=J-zYSq7-H-2n9hYOXNIun12kM10vNX9mMATGR_egTmY,1806
 graphiti_core/utils/maintenance/__init__.py,sha256=vW4H1KyapTl-OOz578uZABYcpND4wPx3Vt6aAPaXh78,301
 graphiti_core/utils/maintenance/community_operations.py,sha256=XMiokEemn96GlvjkOvbo9hIX04Fea3eVj408NHG5P4o,11042
-graphiti_core/utils/maintenance/edge_operations.py,sha256=rfFsqigWXNcUGKu1l1-RdSoFdEeioK78oo4VWOagqgs,20576
+graphiti_core/utils/maintenance/dedup_helpers.py,sha256=vlH_vr0OSdlAMRN2MqxXJO0ktZm1tV3Ua-piNEXlusM,8908
+graphiti_core/utils/maintenance/edge_operations.py,sha256=fvWKJWzz4_d2Y8bOfZFjJpLnGmsFwnrutFW25LX-S08,21287
 graphiti_core/utils/maintenance/graph_data_operations.py,sha256=42icj3S_ELAJ-NK3jVS_rg_243dmnaZOyUitJj_uJ-M,6085
-graphiti_core/utils/maintenance/node_operations.py,sha256=xSeRK8cdit9GT9ZKNGpawg01Wcu1W3FsBH9moFH_mao,13423
+graphiti_core/utils/maintenance/node_operations.py,sha256=uETM0536c2BAwr7pSdpiUHER6Nt7piWcKKK8O8AoBz4,15716
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