gismap 0.1.0__py3-none-any.whl → 0.2.1__py3-none-any.whl

gismap/utils/common.py

@@ -1,4 +1,4 @@
-HIDDEN_KEYS = {"sources", "aliases", "abstract"}
+HIDDEN_KEYS = {"sources", "aliases", "abstract", "metadata"}
 
 
 class LazyRepr:
@@ -10,7 +10,7 @@ class LazyRepr:
         kws = [
             f"{key}={value!r}"
             for key, value in self.__dict__.items()
-            if value and key not in HIDDEN_KEYS
+            if value and key not in HIDDEN_KEYS and not key.startswith("_")
         ]
         return f"{type(self).__name__}({', '.join(kws)})"
 
@@ -58,3 +58,48 @@ def get_classes(root, key="name"):
     for c in root.__subclasses__():
         result.update(get_classes(c))
     return result
+
+
+def list_of_objects(clss, dico, default=None):
+    """
+    Versatile way to enter a list of objects referenced by a dico.
+
+    Parameters
+    ----------
+    clss: :class:`object`
+        Object or reference to an object or list of objects / references to objects.
+    dico: :class:`dict`
+        Dictionary of references to objects.
+    default: :class:`list`, optional
+        Default list to return if `clss` is None.
+
+    Returns
+    -------
+    :class:`list`
+        Proper list of objects.
+
+    Examples
+    ________
+
+    >>> from gismap.sources.models import DB
+    >>> subclasses = get_classes(DB, key='db_name')
+    >>> from gismap import HAL, DBLP
+    >>> list_of_objects([HAL, 'dblp'], subclasses)
+    [<class 'gismap.sources.hal.HAL'>, <class 'gismap.sources.dblp.DBLP'>]
+    >>> list_of_objects(None, subclasses, [DBLP])
+    [<class 'gismap.sources.dblp.DBLP'>]
+    >>> list_of_objects(DBLP, subclasses)
+    [<class 'gismap.sources.dblp.DBLP'>]
+    >>> list_of_objects('hal', subclasses)
+    [<class 'gismap.sources.hal.HAL'>]
+    """
+    if default is None:
+        default = []
+    if clss is None:
+        return default
+    elif isinstance(clss, str):
+        return [dico[clss]]
+    elif isinstance(clss, list):
+        return [cls for lcls in clss for cls in list_of_objects(lcls, dico, default)]
+    else:
+        return [clss]

gismap/utils/requests.py

@@ -1,12 +1,19 @@
 from time import sleep
 import requests
+from importlib.metadata import metadata
 from gismap.utils.logger import logger
 
 
+infos = metadata("gismap")
 session = requests.Session()
+session.headers.update(
+    {
+        "User-Agent": f"{infos['name']}/{infos['Version']} ({'; '.join(infos.get_all('Project-URL'))}; Contact, {infos['author-email']}"
+    }
+)
 
 
-def get(url, params=None):
+def get(url, params=None, n_trials=10):
     """
     Parameters
     ----------
@@ -20,14 +27,20 @@ def get(url, params=None):
     :class:`str`
         Result.
     """
-    while True:
-        r = session.get(url, params=params)
-        if r.status_code == 429:
-            try:
-                t = int(r.headers["Retry-After"])
-            except KeyError:
-                t = 60
-            logger.warning(f"Too many requests. Auto-retry in {t} seconds.")
+    for attempt in range(n_trials):
+        try:
+            r = session.get(url, params=params)
+            if r.status_code == 429:
+                try:
+                    t = int(r.headers["Retry-After"])
+                except KeyError:
+                    t = 60
+                logger.warning(f"Too many requests. Auto-retry in {t} seconds.")
+                sleep(t)
+            else:
+                return r.text
+        except requests.exceptions.ConnectionError:
+            t = 6
+            logger.warning(f"Connection error. Auto-retry in {t} seconds.")
             sleep(t)
-        else:
-            return r.text
+    raise requests.exceptions.ConnectionError(f"Unable to retrieve {url}")

gismap/utils/text.py

@@ -1,4 +1,5 @@
 from bof.fuzz import Process
+import unicodedata
 
 
 class Corrector:
@@ -90,4 +91,68 @@ def clean_aliases(name, alias_list):
     :class:`list`
         Aliases deduped, sorted, and with main name removed.
     """
-    return sorted(set(n for n in alias_list if n != name))
+    return sorted(set(n for nn in alias_list for n in [nn, asciify(nn)] if n != name))
+
+
+def asciify(text):
+    """
+    Parameters
+    ----------
+    text::class:`str`
+        Some text (typically names) with annoying accents.
+
+    Returns
+    -------
+    :class:`str`
+        Same text simplified into ascii.
+
+    Examples
+    --------
+    >>> asciify('Ana Bušić')
+    'Ana Busic'
+    >>> asciify("Thomas Deiß")
+    'Thomas Deiss'
+    """
+    text = text.replace("ß", "ss")
+    decomposed = unicodedata.normalize("NFD", text)
+    no_accents = "".join(c for c in decomposed if unicodedata.category(c) != "Mn")
+    ascii_text = no_accents.encode("ascii", "ignore").decode()
+    return ascii_text
+
+
+def normalized_name(txt):
+    """
+    Try to normalize names for facilitating comparisons. Name is lowered, split, asciified, sorted, and filtered.
+
+    Parameters
+    ----------
+    txt: :class:`str`
+
+    Returns
+    -------
+    :class:`str`
+
+    Examples
+    --------
+
+    >>> normalized_name("Thomas Deiß")
+    'deiss thomas'
+    >>> normalized_name("Dario Rossi 001")
+    'dario rossi'
+    >>> normalized_name("James W. Roberts")
+    'james roberts'
+    """
+    return " ".join(
+        sorted(
+            asciify(a)
+            for a in txt.lower().replace("-", " ").split()
+            if not (a.isdigit() or (len(a) < 3 and "." in a))
+        )
+    )
+
+
+def auto_int(txt):
+    try:
+        return int(txt)
+    except ValueError:
+        return txt

{gismap-0.1.0.dist-info → gismap-0.2.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: gismap
-Version: 0.1.0
+Version: 0.2.1
 Summary: GISMAP leverages DBLP and HAL databases to provide cartography tools for you and your lab.
 Project-URL: Repository, https://github.com/balouf/gismap
 Project-URL: Documentation, https://balouf.github.io/gismap
@@ -11,6 +11,8 @@ License-File: AUTHORS.md
 Requires-Python: >=3.10
 Requires-Dist: bof>=0.3.5
 Requires-Dist: gismo>=0.5.2
+Requires-Dist: ipykernel>=6.30.1
+Requires-Dist: tqdm>=4.67.1
 Description-Content-Type: text/markdown
 
 # Generic Information Search: Mapping and Analysis of Publications
@@ -47,11 +49,11 @@ Use GISMAP to produce a collaboration graph (HTML):
 
 ```pycon
 >>> from gismap.sources.hal import HAL
->>> from gismap.lab import ListLab, lab2graph
->>> lab = ListLab(["Mathilde Labbé", "Anne Reverseau", "David Martens", "Marcela Scibiorska", "Nathalie Grande"], dbs=[HAL])
+>>> from gismap.lab import ListLab
+>>> lab = ListLab(["Fabien Mathieu", "François Baccelli", "Ludovic Noirie", "Céline Comte", "Sébastien Tixeuil"], dbs="hal")
 >>> lab.update_authors()
 >>> lab.update_publis()
->>> collabs = lab2graph(lab)
+>>> lab.show_html()
 ```
 
 ## Credits

gismap-0.2.1.dist-info/RECORD

@@ -0,0 +1,29 @@
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+gismap/author.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+gismap/gismap.py,sha256=h0hwdogXGFqerm-5ZPeT-irPn91pCcQRjiHThXsRzEk,19
+gismap/gismo.py,sha256=kBzvlo-fqcvEgwQt-c_hHkfI1oTjBbKKb54vM8il_nI,6295
+gismap/search.py,sha256=nsUoDsFGeEtvCZ0dB7ooRPC_6qsazkiWx_oM7dHdNV4,4932
+gismap/lab/__init__.py,sha256=WeJkoNZmFnLoEgK_nwXqZrA4nQtpeTLPf6PPMFIGb4k,415
+gismap/lab/egomap.py,sha256=L5OKeZR7RCfX3EPm859-jZ1jnqlC3kpa0jybofhLPPc,1328
+gismap/lab/expansion.py,sha256=fYcUvkGi3W1GTx2gnFT1z3cI-jlZFFAicDM99wi2wzE,6186
+gismap/lab/filters.py,sha256=LL3jeCqLBpLeaz1lz5IvduV4G1xBPaty9SHiBxoYgak,486
+gismap/lab/graph.py,sha256=8fzxohyUWqayLKaOC7CpBaKDN63eZK6oYp7nrfDDosw,6680
+gismap/lab/lab.py,sha256=Uc9Qg7Okf3L5K8gHTlnOv7lPbeA9OBfivCmZwRPwzp8,5331
+gismap/lab/lab_author.py,sha256=jQhq1spZP5P-Bpzr5E_OP73gWy3SG6UjiVCGotjm57s,2439
+gismap/lab/lip6.py,sha256=LLLjV8zNqwdkvtuV4nfmScCDlaeeGw79I0KQuOQ1_Yo,1443
+gismap/lab/toulouse.py,sha256=Ex3lBPdYhAzAnPQw9Driho7joJNTHLpE_nNMooQH_nc,1495
+gismap/lab/vis.py,sha256=YwMkoSa3-IsoNooQgZbluvIrQsYRbti1dlVRewypBNY,8734
+gismap/sources/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+gismap/sources/dblp.py,sha256=_AgPgDbHYYaeJVam43eExv1VsglvAV46eP77RL7o9Fo,5278
+gismap/sources/hal.py,sha256=3VjiUH5amNfJYV5uAtX-JcGWMNKUkmjfXU0Osca9CC8,10021
+gismap/sources/models.py,sha256=yJPBXcJO6MgOrSXgpGPepHDDtniJP1OsK8OSz__VzYc,543
+gismap/sources/multi.py,sha256=HQMQ4kcDwg0rZ42av98DZ17o83dpR2fD4KtP1yFX14c,4352
+gismap/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+gismap/utils/common.py,sha256=nx1f60yNwFpl1oz08h-R5o0xK9CbJv9tmYLDk61dwYA,2898
+gismap/utils/logger.py,sha256=1YALIaNYKTqeIyyCnYxzvZTK7x4FTSfYYl5CP9IMw8E,86
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+gismap/utils/text.py,sha256=1_9DlduAYh7Nz-yAg-MaCTmdKbPPmuIY20bb87t7JAQ,3810
+gismap-0.2.1.dist-info/METADATA,sha256=ZKER11xqoYCNSMmLpe-E7BdBbiLRMrAQuFEqct3ofuk,2542
+gismap-0.2.1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+gismap-0.2.1.dist-info/licenses/AUTHORS.md,sha256=oDR4mptVUBMq0WKIpt19Km1Bdfz3cO2NAOVgwVfTO8g,131
+gismap-0.2.1.dist-info/RECORD,,

gismap-0.1.0.dist-info/RECORD

@@ -1,25 +0,0 @@
-gismap/__init__.py,sha256=TFBKB5AwAxzmcpIB48EpT4Ud9S417i5Obh85w2t1-Zc,598
-gismap/author.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-gismap/gismap.py,sha256=h0hwdogXGFqerm-5ZPeT-irPn91pCcQRjiHThXsRzEk,19
-gismap/gismo.py,sha256=kBzvlo-fqcvEgwQt-c_hHkfI1oTjBbKKb54vM8il_nI,6295
-gismap/search.py,sha256=nsUoDsFGeEtvCZ0dB7ooRPC_6qsazkiWx_oM7dHdNV4,4932
-gismap/lab/__init__.py,sha256=UQVY6Sk7o9O0YREArXA8_8ZfrDO0JYLy8tikSHBEbzo,377
-gismap/lab/graph.py,sha256=LOHNnmFqgsZc7YGUcFQ1GKl0DFiStFfoYqx-2IrjFAk,6525
-gismap/lab/lab.py,sha256=-mBcHcP9JaBAiiZlWRygac5MQdO0b6AriHWiLgTveWc,4224
-gismap/lab/lip6.py,sha256=yRx-RWgcGhGWUk_oyfgC9QYJSVnATnp6YlNvaOlr8Gw,1410
-gismap/lab/toulouse.py,sha256=KkzNOCFt3OU6pDJmDmli6wRNuMwH8CPXHj_S6aOcYeg,1462
-gismap/lab/vis.py,sha256=1QgLgLQjcB7rGiZ946lhLU1kR38oXp_Y8l8U-Ukn65k,5497
-gismap/sources/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-gismap/sources/dblp.py,sha256=5ZKngU66xgXffmiGHsbXGXJfU_NIybnuzXXZPcWIZoE,5381
-gismap/sources/hal.py,sha256=mWyiG12wXE9A8w81YGFicx8Yy9mX-anvIEoBueU2U6Q,9136
-gismap/sources/models.py,sha256=yJPBXcJO6MgOrSXgpGPepHDDtniJP1OsK8OSz__VzYc,543
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-gismap/utils/logger.py,sha256=1YALIaNYKTqeIyyCnYxzvZTK7x4FTSfYYl5CP9IMw8E,86
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-gismap-0.1.0.dist-info/METADATA,sha256=bTM9vZl81oJ5dUYakrCEL1uAbTZzEgC1AGSePg1TBU8,2499
-gismap-0.1.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-gismap-0.1.0.dist-info/licenses/AUTHORS.md,sha256=oDR4mptVUBMq0WKIpt19Km1Bdfz3cO2NAOVgwVfTO8g,131
-gismap-0.1.0.dist-info/RECORD,,