ghga-transpiler 2.3.2__py3-none-any.whl → 2.4.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- ghga_transpiler/configs/2.0.yaml +4 -0
- ghga_transpiler/configs/2.1.yaml +4 -0
- ghga_transpiler/configs/2.2.yaml +178 -0
- ghga_transpiler/transformations.py +5 -0
- {ghga_transpiler-2.3.2.dist-info → ghga_transpiler-2.4.0.dist-info}/METADATA +1 -1
- {ghga_transpiler-2.3.2.dist-info → ghga_transpiler-2.4.0.dist-info}/RECORD +10 -9
- {ghga_transpiler-2.3.2.dist-info → ghga_transpiler-2.4.0.dist-info}/WHEEL +1 -1
- {ghga_transpiler-2.3.2.dist-info → ghga_transpiler-2.4.0.dist-info}/entry_points.txt +0 -0
- {ghga_transpiler-2.3.2.dist-info → ghga_transpiler-2.4.0.dist-info}/licenses/LICENSE +0 -0
- {ghga_transpiler-2.3.2.dist-info → ghga_transpiler-2.4.0.dist-info}/top_level.txt +0 -0
ghga_transpiler/configs/2.0.yaml
CHANGED
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@@ -119,6 +119,8 @@ worksheets:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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attributes:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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sequencing_read_length:
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!!python/name:ghga_transpiler.transformations.to_string
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sheet_name: ExperimentMethod
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- settings:
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end_column: 7
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@@ -136,6 +138,8 @@ worksheets:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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format:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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sequencing_lane_id:
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!!python/name:ghga_transpiler.transformations.to_string
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sheet_name: ResearchDataFile
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- settings:
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end_column: 7
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ghga_transpiler/configs/2.1.yaml
CHANGED
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@@ -121,6 +121,8 @@ worksheets:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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attributes:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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sequencing_read_length:
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!!python/name:ghga_transpiler.transformations.to_string
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sheet_name: ExperimentMethod
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- settings:
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end_column: 7
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@@ -138,6 +140,8 @@ worksheets:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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format:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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sequencing_lane_id:
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!!python/name:ghga_transpiler.transformations.to_string
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sheet_name: ResearchDataFile
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- settings:
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end_column: 7
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@@ -0,0 +1,178 @@
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ghga_metadata_version: 2.2.0
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default_settings:
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header_row: 1
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start_row: 7
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start_column: 1
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transformations:
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attributes:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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format:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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worksheets:
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- settings:
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end_column: 7
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name: analyses
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transformations:
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research_data_files:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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sheet_name: Analysis
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- settings:
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end_column: 17
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name: analysis_methods
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transformations:
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reference_type:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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parameters:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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software_versions:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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attributes:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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sheet_name: AnalysisMethod
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- settings:
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end_column: 7
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name: analysis_method_supporting_files
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sheet_name: AnalysisMethodSupportingFile
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- settings:
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end_column: 7
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name: studies
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transformations:
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affiliations:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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attributes:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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types:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case_list []
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attributes:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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sheet_name: Study
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- settings:
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end_column: 10
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name: individuals
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transformations:
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phenotypic_features_terms:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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phenotypic_features_ids:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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diagnosis_ids:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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diagnosis_terms:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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sex:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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ancestry_terms:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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ancestry_ids:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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sheet_name: Individual
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- settings:
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end_column: 7
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name: individual_supporting_files
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sheet_name: IndividualSupportingFile
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- settings:
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end_column: 21
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name: samples
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transformations:
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type:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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storage:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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disease_or_healthy:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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case_control_status:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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xref: !!python/object/apply:ghga_transpiler.transformations.to_list []
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biospecimen_age_at_sampling:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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biospecimen_vital_status_at_sampling:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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biospecimen_isolation:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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biospecimen_storage:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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attributes:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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sheet_name: Sample
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- settings:
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end_column: 23
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name: experiment_methods
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transformations:
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library_type:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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library_selection_methods:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case_list []
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library_preparation_kit_retail_name:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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primer:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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end_bias:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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target_regions:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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rnaseq_strandedness:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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instrument_model:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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sequencing_layout:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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flow_cell_type:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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sample_barcode_read:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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sequencing_layout:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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attributes:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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sequencing_read_length:
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!!python/name:ghga_transpiler.transformations.to_string
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sheet_name: ExperimentMethod
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- settings:
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end_column: 7
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name: experiment_method_supporting_files
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sheet_name: ExperimentMethodSupportingFile
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- settings:
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end_column: 8
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name: experiments
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sheet_name: Experiment
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- settings:
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end_column: 9
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name: research_data_files
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transformations:
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experiments:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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format:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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sequencing_lane_id:
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!!python/name:ghga_transpiler.transformations.to_string
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sheet_name: ResearchDataFile
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- settings:
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end_column: 7
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name: process_data_files
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sheet_name: ProcessDataFile
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- settings:
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end_column: 7
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name: datasets
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transformations:
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types: !!python/object/apply:ghga_transpiler.transformations.to_list []
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sheet_name: Dataset
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- settings:
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end_column: 11
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name: data_access_policies
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transformations:
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data_use_modifier_terms:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case_list []
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data_use_permission_term:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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data_use_modifier_ids:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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sheet_name: DataAccessPolicy
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- settings:
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end_column: 4
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name: data_access_committees
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sheet_name: DataAccessCommittee
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- settings:
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end_column: 9
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name: publications
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transformations:
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xref: !!python/object/apply:ghga_transpiler.transformations.to_list []
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sheet_name: Publication
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@@ -3,19 +3,20 @@ ghga_transpiler/__main__.py,sha256=k82ZsGuAOTrbqB4rCNkGOS-AWU8GICtD1_owfiey-Sk,8
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ghga_transpiler/cli.py,sha256=CvRQdiprRj1ZHjXgHpZ7JhDoAum7WB-sdFyMKknjtxk,2522
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ghga_transpiler/core.py,sha256=Fhf5pICDmVPKrUOhQNo6uN-mZB8mA1Vlyq3VGeeVSZ8,5235
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ghga_transpiler/io.py,sha256=e9DT5l5UumX2NcBJOkrR0y7ho_FPvK914WeFRZ4rOjw,1805
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ghga_transpiler/transformations.py,sha256=
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ghga_transpiler/transformations.py,sha256=ajsqvgRMLqmreDNwM_l-ho38iHlGQt04aYQh7aMmV6Y,2323
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ghga_transpiler/config/__init__.py,sha256=CsnuJcqYMBx5zDcMgAzuKGRs5GQSS9N0evzDZ-T_g7k,817
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ghga_transpiler/config/config.py,sha256=YlIMQwnnpi8BelrdHtbZpJsp9RfwHCDZ56tCvU89wts,3823
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ghga_transpiler/config/exceptions.py,sha256=WB0YM5hJAn7iVGB_SY0p6Q4D0do1ti7AM4pKnMyVfLc,1090
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ghga_transpiler/configs/0.10.yaml,sha256=hsS8xwzJ00SRSb-VIfM-oM8UM0hOdR3xeuflf1fra4Y,5683
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ghga_transpiler/configs/1.0.yaml,sha256=MgSEkDpZjn7I76uLFAfpCfmOqOaCBjEojn6VDX6TnUc,5683
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ghga_transpiler/configs/1.1.yaml,sha256=rgxTV7bEVMwk1UeJ8hAeCZcqTwX10KXQKoaYnpV0bxI,5683
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ghga_transpiler/configs/2.0.yaml,sha256=
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ghga_transpiler/configs/2.1.yaml,sha256=
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ghga_transpiler/configs/2.0.yaml,sha256=Abs_rnznuTNp0jHY_hNrDSZgYcts0v-0AdA-QBuQo8w,6829
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ghga_transpiler/configs/2.1.yaml,sha256=N2nvgIAh1Es_2VO1Ti6wxDhRKKGtFk1EwVJj9jacfdA,6930
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ghga_transpiler/configs/2.2.yaml,sha256=_OIfepEwVwUaH-pDrorhVsM53DFfCiZ42SPLZ2rSS6k,7035
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ghga_transpiler/configs/__init__.py,sha256=xL0pfHoTdBh0LhdqA8lpdhp3W68HJVXF7AURhBM7pU4,686
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ghga_transpiler-2.
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ghga_transpiler-2.
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ghga_transpiler-2.
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ghga_transpiler-2.
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ghga_transpiler-2.
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ghga_transpiler-2.4.0.dist-info/licenses/LICENSE,sha256=nKgIWA3zoWy18_YSW6e9Gd6_p7d7ccwjNZrfJzvKALE,11452
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ghga_transpiler-2.4.0.dist-info/METADATA,sha256=8nB2YE9zlyz05r3E2o9aw8Y0ug3cn9rMAjs7QKUbces,4452
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ghga_transpiler-2.4.0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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ghga_transpiler-2.4.0.dist-info/entry_points.txt,sha256=Fr_VQJynZZl95NXjrQW2gE0bCocgjKVNEZQpaLls8po,65
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21
|
+
ghga_transpiler-2.4.0.dist-info/top_level.txt,sha256=TksRpDO3Y4mvK-B09UhQU3ceZpG19fljNlVDGTfjg8o,16
|
|
22
|
+
ghga_transpiler-2.4.0.dist-info/RECORD,,
|
|
File without changes
|
|
File without changes
|
|
File without changes
|