gfviewer 2.0.0__py3-none-any.whl
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- gfviewer/__init__.py +18 -0
- gfviewer/analytics.py +1348 -0
- gfviewer/charts.py +254 -0
- gfviewer/cli.py +284 -0
- gfviewer/errors.py +33 -0
- gfviewer/genome.py +251 -0
- gfviewer/io.py +709 -0
- gfviewer/legacy.py +459 -0
- gfviewer/palette.py +236 -0
- gfviewer/pipeline.py +115 -0
- gfviewer/render.py +709 -0
- gfviewer/style.py +210 -0
- gfviewer-2.0.0.dist-info/LICENSE +21 -0
- gfviewer-2.0.0.dist-info/METADATA +197 -0
- gfviewer-2.0.0.dist-info/RECORD +26 -0
- gfviewer-2.0.0.dist-info/WHEEL +5 -0
- gfviewer-2.0.0.dist-info/entry_points.txt +2 -0
- gfviewer-2.0.0.dist-info/top_level.txt +2 -0
- gfviewer_web/__init__.py +73 -0
- gfviewer_web/api.py +171 -0
- gfviewer_web/config.py +46 -0
- gfviewer_web/datasets.py +201 -0
- gfviewer_web/errors.py +49 -0
- gfviewer_web/jobs.py +585 -0
- gfviewer_web/routes.py +127 -0
- gfviewer_web/usage.py +181 -0
gfviewer/__init__.py
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"""GFViewer: visualize the localization of multigene families across chromosomes.
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The package is organized as:
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* :mod:`gfviewer.genome` -- read chromosome lengths (FASTA / .fai / chrom.sizes / table)
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* :mod:`gfviewer.io` -- unified feature loader (table / BED / GFF3 / GTF) + validation
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* :mod:`gfviewer.palette` -- programmatic colour-palette generation
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* :mod:`gfviewer.style` -- :class:`StyleConfig` and YAML/JSON style files
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* :mod:`gfviewer.render` -- matplotlib ideogram renderer (PDF/SVG/PNG/JPG/...)
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* :mod:`gfviewer.analytics` -- per-family statistics, clustering, localization bias
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* :mod:`gfviewer.cli` -- command-line interface
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"""
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__version__ = "2.0.0"
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from gfviewer.errors import GFViewerError, InputValidationError # noqa: E402
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__all__ = ["__version__", "GFViewerError", "InputValidationError"]
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