geospacelab 0.11.4__py3-none-any.whl → 0.12.0__py3-none-any.whl

geospacelab/datahub/sources/cdaweb/dmsp/ssusi/sdr_disk/loader.py

@@ -0,0 +1,198 @@
+# Licensed under the BSD 3-Clause License
+# Copyright (C) 2021 GeospaceLab (geospacelab)
+# Author: Lei Cai, Space Physics and Astronomy, University of Oulu
+
+import netCDF4
+import datetime
+import numpy as np
+import re
+import cdflib
+
+import geospacelab.toolbox.utilities.pydatetime as dttool
+import geospacelab.toolbox.utilities.pybasic as pybasic
+
+
+class Loader(object):
+
+    def __init__(self, file_path, file_type='sdr-disk', pole='N', pp_type='AURORAL'):
+
+        self.variables = {}
+        self.metadata = {}
+        self.file_path = file_path
+        self.file_type = file_type
+        self.pole = pole
+        self.pp_type = pp_type
+
+        self.load_data()
+
+    def load_data(self):
+        dataset = netCDF4.Dataset(self.file_path)
+        variables = {}
+        metadata = {}
+
+        # get the version of the file
+        variables['FILE_VERSION'] = re.findall(r"(v[\w\d.]+).nc", dataset.FILENAME)[0]
+        variables['DATA_PRODUCT_VERSION'] = str(dataset.DATA_PRODUCT_VERSION)
+        variables['SOFTWARE_VERSION_NUMBER'] = str(dataset.SOFTWARE_VERSION_NUMBER)
+        variables['CALIBRATION_PERIOD_VERSION'] = dataset.CALIBRATION_PERIOD_VERSION
+        variables['EMISSION_SPECTRA'] = ['1216', '1304', '1356', 'LBHS', 'LBHL']
+
+        if self.pole == 'N':
+            pole = self.pole
+            pole_str = 'NORTH'
+        elif self.pole == 'S':
+            pole = self.pole
+            pole_str = 'SOUTH'
+        else:
+            raise ValueError
+
+        if self.pp_type in ['AURORAL', 'DAY_AURORAL', 'DAY_AUR']:
+            pp_key_1 = 'DAY'
+            pp_key_2 = 'AURORAL'
+        else:
+            pp_key_1 = self.pp_type
+            pp_key_2 = ''
+
+        # Global attributes
+        starting_time = datetime.datetime.strptime(dataset.STARTING_TIME, "%Y%j%H%M%S")
+        variables['STARTING_TIME'] = starting_time
+        stopping_time = datetime.datetime.strptime(dataset.STOPPING_TIME, "%Y%j%H%M%S")
+        variables['STOPPING_TIME'] = stopping_time
+        dt0 = dttool.get_start_of_the_day(starting_time)
+
+        # Time and position
+        sectime = pybasic.str_join('TIME', pp_key_1, pp_key_2, separator='_', uppercase=True)
+        sectime = np.array(dataset.variables[sectime])
+        cdfepoch = pybasic.str_join('TIME', 'EPOCH', pp_key_1, pp_key_2, separator='_', uppercase=True)
+        dts = cdflib.cdfepoch.unixtime(np.array(dataset.variables[cdfepoch]))
+        dts = dttool.convert_unix_time_to_datetime_cftime(dts)
+
+        var_name_nc = pybasic.str_join('ORBIT', pp_key_1, pp_key_2, separator='_', uppercase=True)
+        variables['SC_ORBIT_ID'] = np.array(dataset.variables[var_name_nc])
+
+        var_name_nc = pybasic.str_join('LATITUDE', pp_key_1, pp_key_2, separator='_', uppercase=True)
+        geo_lat = np.array(dataset.variables[var_name_nc])
+
+        ind_full = np.arange(0, geo_lat.shape[0])
+        if self.pole in ['N', 'S']:
+            ind_S = np.where(geo_lat < -5.)[0]
+            if list(ind_S):
+                ind_N = ind_full[0:ind_S[0]]
+            else:
+                ind_N = np.where(geo_lat > 5.)[0]
+            if (self.pole == 'N' and not list(ind_N)) or (self.pole == 'S' and not list(ind_S)):
+                raise ValueError("No data available!")
+
+            if self.pole == 'N':
+                ind_along = ind_N
+            else:
+                ind_along = ind_S
+        elif self.pole == 'both':
+            ind_along = ind_full
+        else:
+            raise NotImplementedError
+
+        variables['SC_DATETIME'] = dts[ind_along]
+
+        variables['SC_GEO_LAT'] = geo_lat[ind_along]
+
+        if self.pole in ['N', 'S']:
+            ind_center = np.where(np.abs(variables['SC_GEO_LAT']) == np.max(np.abs(variables['SC_GEO_LAT'])))[0][0]
+            variables['DATETIME'] = variables['SC_DATETIME'][ind_center]
+        else:
+            variables['DATETIME'] = starting_time + (stopping_time - starting_time) / 2
+
+        var_name_nc = pybasic.str_join('LONGITUDE', pp_key_1, pp_key_2, separator='_', uppercase=True)
+        variables['SC_GEO_LON'] = np.array(dataset.variables[var_name_nc])[ind_along]
+
+        var_name_nc = pybasic.str_join('ALTITUDE', pp_key_1, pp_key_2, separator='_', uppercase=True)
+        variables['SC_GEO_ALT'] = np.array(dataset.variables[var_name_nc])[ind_along]
+
+        var_name_nc = pybasic.str_join('PIERCEPOINT', pp_key_1, 'LATITUDE', pp_key_2, separator='_', uppercase=True)
+        variables['DISK_GEO_LAT'] = np.array(dataset.variables[var_name_nc]).T[ind_along, :]
+
+        var_name_nc = pybasic.str_join('PIERCEPOINT', pp_key_1, 'LONGITUDE', pp_key_2, separator='_', uppercase=True)
+        variables['DISK_GEO_LON'] = np.array(dataset.variables[var_name_nc]).T[ind_along, :]
+
+        var_name_nc = pybasic.str_join('PIERCEPOINT', pp_key_1, 'ALTITUDE', pp_key_2, separator='_', uppercase=True)
+        variables['DISK_GEO_ALT'] = np.array(dataset.variables[var_name_nc])
+
+        var_name_nc = pybasic.str_join('PIERCEPOINT', pp_key_1, 'SZA', pp_key_2, separator='_', uppercase=True)
+        variables['DISK_SZA'] = np.array(dataset.variables[var_name_nc]).T[ind_along, :]
+
+        var_name_nc = pybasic.str_join('IN_SAA', pp_key_1, pp_key_2, separator='_', uppercase=True)
+        variables['DISK_SAA'] = np.array(dataset.variables[var_name_nc]).T[ind_along, :]
+
+        var_name_nc = pybasic.str_join('ACROSSPIXELSIZE', pp_key_1, pp_key_2, separator='_', uppercase=True)
+        variables['ACROSS_PIXEL_SIZE'] = np.array(dataset.variables[var_name_nc])
+
+        var_name_nc = pybasic.str_join('ALONGPIXELSIZE', pp_key_1, pp_key_2, separator='_', uppercase=True)
+        variables['ALONG_PIXEL_SIZE'] = np.array(dataset.variables[var_name_nc])
+
+        var_name_nc = pybasic.str_join('EFFECTIVELOOKANGLE', pp_key_1, pp_key_2, separator='_', uppercase=True)
+        variables['EFFECTIVE_LOOK_ANGLE'] = np.array(dataset.variables[var_name_nc]).T[ind_along, :]
+
+        # Re-binned data
+        # var_name_nc = pybasic.str_join('DISKCOUNTSDATA', pp_key_1, pp_key_2, separator='_', uppercase=True)
+        # variables['DISK_COUNTS_DATA'] = np.array(dataset.variables[var_name_nc])
+
+        # var_name_nc = pybasic.str_join('DISKDECOMP_UNCERTAINTY', pp_key_1, pp_key_2, separator='_', uppercase=True)
+        # variables['DISK_DECOMP_UNCERTAINTY'] = np.array(dataset.variables[var_name_nc])
+
+        var_name_nc = pybasic.str_join('EXPOSURE', pp_key_1, pp_key_2, separator='_', uppercase=True)
+        variables['EXPOSURE'] = np.array(dataset.variables[var_name_nc]).T[ind_along, :]
+
+        var_name_nc = pybasic.str_join('SAA_COUNT', pp_key_1, pp_key_2, separator='_', uppercase=True)
+        variables['SAA_COUNT'] = np.array(dataset.variables[var_name_nc]).T[ind_along, :]
+
+        # Calibration parameters
+        var_name_nc = 'DARK_COUNT_CORRECTION'
+        variables['DARK_COUNT_CORRECTION'] = np.array(dataset.variables[var_name_nc])
+
+        var_name_nc = 'SCATTER_LIGHT_1216_CORRECTION'
+        variables['SCATTER_LIGHT_1216_CORRECTION'] = np.array(dataset.variables[var_name_nc])
+
+        var_name_nc = 'SCATTER_LIGHT_1304_CORRECTION'
+        variables['SCATTER_LIGHT_1304_CORRECTION'] = np.array(dataset.variables[var_name_nc])
+
+        var_name_nc = 'OVERLAP_1304_1356_CORRECTION'
+        variables['OVERLAP_1304_1356_CORRECTION'] = np.array(dataset.variables[var_name_nc])
+
+        var_name_nc = 'LONGWAVE_SCATTER_CORRECTION'
+        variables['LONG_WAVE_SCATTER_CORRECTION'] = np.array(dataset.variables[var_name_nc])
+
+        var_name_nc = 'RED_LEAK_CORRECTION'
+        variables['RED_LEAK_CORRECTION'] = np.array(dataset.variables[var_name_nc])
+
+        # Calibrated data
+        var_name_nc = pybasic.str_join('DQI', pp_key_1, pp_key_2, separator='_', uppercase=True)
+        variables['DQI'] = np.array(dataset.variables[var_name_nc]).T[ind_along, :]
+
+        dict_vn_nc = {
+            'DISK_COUNTS':  pybasic.str_join('DISKCOUNTSDATA', pp_key_1, pp_key_2, separator='_', uppercase=True),
+            'DISK_R': pybasic.str_join('DISK', 'INTENSITY', pp_key_1, pp_key_2, separator='_', uppercase=True),
+            'DISK_R_RECT': pybasic.str_join('DISK', 'RECTIFIED', 'INTENSITY', pp_key_1, pp_key_2, separator='_', uppercase=True),
+            'DISK_DECOMP_ERROR': pybasic.str_join('DISKDECOMP_UNCERTAINTY', pp_key_1, pp_key_2, separator='_', uppercase=True),
+            'DISK_R_ERROR': pybasic.str_join('DISK', 'RADIANCE', 'UNCERTAINTY', pp_key_1, pp_key_2,
+                                                  separator='_', uppercase=True),
+            'DISK_R_RECT_ERROR': pybasic.str_join('DISK', 'RECTIFIED', 'RADIANCE', 'UNCERTAINTY', pp_key_1, pp_key_2,
+                                                  separator='_', uppercase=True),
+            'DISK_CALIB_ERROR': pybasic.str_join('DISK', 'CALIBRATION', 'UNCERTAINTY', pp_key_1, pp_key_2,
+                                                  separator='_', uppercase=True),
+            'DQI': pybasic.str_join('DQI', pp_key_1, pp_key_2, 'CHAN', separator='_', uppercase=True),
+        }
+
+        for vnp, vn_nc in dict_vn_nc.items():
+            disk_array = np.array(dataset.variables[vn_nc])
+            for ind, emline in enumerate(variables['EMISSION_SPECTRA']):
+                if 'ERROR' in vnp:
+                    vn = vnp.replace('_ERROR', '') +  '_' + emline + '_ERROR'
+                else:
+                    vn = vnp + '_' + emline
+
+                variables[vn] = disk_array[:, :, ind].T[ind_along, :]
+
+        dataset.close()
+
+        self.variables = variables
+        self.metadata = metadata

geospacelab/datahub/sources/cdaweb/dmsp/ssusi/sdr_disk/variable_config.py

@@ -0,0 +1,149 @@
+# Licensed under the BSD 3-Clause License
+# Copyright (C) 2021 GeospaceLab (geospacelab)
+# Author: Lei Cai, Space Physics and Astronomy, University of Oulu
+
+__author__ = "Lei Cai"
+__copyright__ = "Copyright 2021, GeospaceLab"
+__license__ = "BSD-3-Clause License"
+__email__ = "lei.cai@oulu.fi"
+__docformat__ = "reStructureText"
+
+from geospacelab.datahub import VariableModel as Var
+import geospacelab.visualization.mpl.colormaps as cm
+
+database = 'jhuapl'
+
+timestamps = {
+    'DATETIME': 'CENTERED_TIME',
+}
+
+
+default_colormap = cm.cmap_aurora()
+
+default_plot_config = {
+    'line':         {
+        'linestyle':        '-',
+        'linewidth':        1.5,
+        'marker':           '',
+        'markersize':       3,
+    },
+    'pcolormesh':   {
+        'cmap':            default_colormap,
+        'c_scale':         'log',
+        'c_lim':           [100, 6000],
+        'alpha':            0.9,
+    }
+}
+
+configured_variables = {}
+visual = 'on'
+
+depend_0 = {'GEO_LAT': 'DISK_GEO_LAT', 'GEO_LON': 'DISK_GEO_LON'}
+depend_1 = {'GEO_LAT': 'DISK_GEO_LAT'}
+depend_2 = {'GEO_LAT': 'DISK_GEO_LAT', 'GEO_LON': 'DISK_GEO_LON'}
+depend_c = {'SPECTRA': 'EMISSION_SPECTRA'}
+
+####################################################################################################################
+var_name = 'DISK_R_LBHS'
+var = Var(name=var_name, ndim=3, variable_type='scalar', visual=visual)
+# set variable attrs
+var.fullname = 'Auroral emission intensity at LBHS'
+var.label = r'LBHS'
+var.group = 'Emission intensity'
+var.unit = 'R'
+var.depends = {0: depend_0, 1: {'AACGM_LAT': 'GRID_MLAT'}, 2: {'AACGM_LON': 'GRID_MLON'}}
+# set plot attrs
+plot_config = var.visual.plot_config
+plot_config.config(**default_plot_config)
+plot_config.style = '2P'
+# set axis attrs
+axis = var.visual.axis
+
+
+configured_variables[var_name] = var
+
+configured_variables['DISK_R_RECT_LBHS'] = var.clone()
+
+####################################################################################################################
+var_name = 'DISK_R_LBHL'
+var = Var(name=var_name, ndim=3, variable_type='scalar', visual=visual)
+# set variable attrs
+var.fullname = 'Auroral emission intensity at LBHL'
+var.label = r'LBHL'
+var.group = 'Emission intensity'
+var.unit = 'R'
+var.depends = {0: depend_0, 1: {'AACGM_LAT': 'GRID_MLAT'}, 2: {'AACGM_LON': 'GRID_MLON'}}
+# set plot attrs
+plot_config = var.visual.plot_config
+plot_config.config(**default_plot_config)
+plot_config.style = '2P'
+# set axis attrs
+axis = var.visual.axis
+
+
+configured_variables[var_name] = var
+
+configured_variables['DISK_R_RECT_LBHL'] = var.clone()
+
+####################################################################################################################
+var_name = 'DISK_R_1304'
+var = Var(name=var_name, ndim=3, variable_type='scalar', visual=visual)
+# set variable attrs
+var.fullname = 'Auroral emission intensity at 130.4 nm'
+var.label = r'1304'
+var.group = 'Emission intensity'
+var.unit = 'R'
+var.depends = {0: depend_0, 1: {'AACGM_LAT': 'GRID_MLAT'}, 2: {'AACGM_LON': 'GRID_MLON'}}
+# set plot attrs
+plot_config = var.visual.plot_config
+plot_config.config(**default_plot_config)
+plot_config.style = '2P'
+# set axis attrs
+axis = var.visual.axis
+
+
+configured_variables[var_name] = var
+
+configured_variables['DISK_R_RECT_1304'] = var.clone()
+
+####################################################################################################################
+var_name = 'DISK_R_1356'
+var = Var(name=var_name, ndim=3, variable_type='scalar', visual=visual)
+# set variable attrs
+var.fullname = 'Auroral emission intensity at 135.6 nm'
+var.label = r'1356'
+var.group = 'Emission intensity'
+var.unit = 'R'
+var.depends = {0: depend_0, 1: {'AACGM_LAT': 'GRID_MLAT'}, 2: {'AACGM_LON': 'GRID_MLON'}}
+# set plot attrs
+plot_config = var.visual.plot_config
+plot_config.config(**default_plot_config)
+plot_config.style = '2P'
+# set axis attrs
+axis = var.visual.axis
+
+
+configured_variables[var_name] = var
+
+configured_variables['DISK_R_RECT_1356'] = var.clone()
+
+####################################################################################################################
+var_name = 'DISK_R_1216'
+var = Var(name=var_name, ndim=3, variable_type='scalar', visual=visual)
+# set variable attrs
+var.fullname = 'Auroral emission intensity at 121.6 nm'
+var.label = r'1216'
+var.group = 'Emission intensity'
+var.unit = 'R'
+var.depends = {0: depend_0, 1: {'AACGM_LAT': 'GRID_MLAT'}, 2: {'AACGM_LON': 'GRID_MLON'}}
+# set plot attrs
+plot_config = var.visual.plot_config
+plot_config.config(**default_plot_config)
+plot_config.style = '2P'
+# set axis attrs
+axis = var.visual.axis
+
+
+configured_variables[var_name] = var
+
+configured_variables['DISK_R_RECT_1216'] = var.clone()