geospacelab 0.11.0__py3-none-any.whl → 0.11.2__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- geospacelab/__init__.py +1 -1
- geospacelab/cs/_cs_base.py +2 -1
- geospacelab/datahub/sources/madrigal/satellites/dmsp/e/__init__.py +37 -33
- geospacelab/datahub/sources/madrigal/satellites/dmsp/s1/__init__.py +36 -37
- geospacelab/datahub/sources/madrigal/satellites/dmsp/s4/__init__.py +80 -33
- geospacelab/toolbox/utilities/numpyarray.py +19 -2
- {geospacelab-0.11.0.dist-info → geospacelab-0.11.2.dist-info}/METADATA +1 -1
- {geospacelab-0.11.0.dist-info → geospacelab-0.11.2.dist-info}/RECORD +11 -11
- {geospacelab-0.11.0.dist-info → geospacelab-0.11.2.dist-info}/WHEEL +0 -0
- {geospacelab-0.11.0.dist-info → geospacelab-0.11.2.dist-info}/licenses/LICENSE +0 -0
- {geospacelab-0.11.0.dist-info → geospacelab-0.11.2.dist-info}/top_level.txt +0 -0
geospacelab/__init__.py
CHANGED
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@@ -6,7 +6,7 @@ __author__ = "Lei Cai"
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__copyright__ = "Copyright 2021, GeospaceLAB"
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__credits__ = ["Lei Cai"]
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__license__ = "BSD-3-Clause License"
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__version__ = "0.11.
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__version__ = "0.11.2"
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__maintainer__ = "Lei Cai"
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__email__ = "lei.cai@oulu.fi"
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__status__ = "Developing"
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geospacelab/cs/_cs_base.py
CHANGED
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@@ -215,13 +215,14 @@ class SpaceCartesianCS(SpaceCSBase):
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# phi: longitude, theta: co-latitude, r: radial distance
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r = np.sqrt(self.coords.x ** 2 + self.coords.y ** 2 + self.coords.z ** 2)
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r_unit = self.coords.x_unit
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theta = np.arccos(self.coords.z / r)
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phi = npmath.trig_arctan_to_sph_lon(self.coords.x, self.coords.y)
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vector = None
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if self.vector is not None:
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mylog.StreamLogger.warning("The tranformation for vectors have not been implemented!")
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coords = {'theta': theta, 'phi': phi, 'r': r}
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coords = {'theta': theta, 'phi': phi, 'r': r, 'r_unit': r_unit}
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cs_new = set_cs(name=self.name, coords=coords, vector=vector, kind='sph', ut=self.ut, **kwargs)
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return cs_new
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@@ -159,47 +159,51 @@ class Dataset(datahub.DatasetSourced):
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def fix_geo_lon(self):
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from geospacelab.observatory.orbit.sc_orbit import OrbitPosition_SSCWS
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from scipy.interpolate import
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from scipy.interpolate import CubicSpline
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dts_1 = self['SC_DATETIME'].value.flatten()
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dt0 = dttool.get_start_of_the_day(self.dt_fr)
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sectime_1 = [(dt - dt0).total_seconds() for dt in dts_1]
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glat_1 = self['SC_GEO_LAT'].flatten()
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glon_1 = self['SC_GEO_LON'].flatten()
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alt_1 = self['SC_GEO_ALT'].flatten()
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# check outliers
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orbit_obj = OrbitPosition_SSCWS(
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dt_fr=self.dt_fr - datetime.timedelta(minutes=30),
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dt_to=self.dt_to + datetime.timedelta(minutes=30),
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sat_id='dmsp' + self.sat_id.lower()
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)
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glon_new = rad / factor
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# rad = np.where((rad >= 0), rad, rad + 2 * numpy.pi)
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ind_outliers = np.where(np.abs(sin_glon_1 - sin_glon_2_i) > 0.03)[0]
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dts = orbit_obj['SC_DATETIME'].flatten()
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sectimes, _ = dttool.convert_datetime_to_sectime(dts, dt0=dt0)
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x = orbit_obj['SC_GEO_X'].flatten()
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y = orbit_obj['SC_GEO_Y'].flatten()
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z = orbit_obj['SC_GEO_Z'].flatten()
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f_x = CubicSpline(sectimes, x)
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x_i = f_x(sectime_1)
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f_y = CubicSpline(sectimes, y)
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y_i = f_y(sectime_1)
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f_z = CubicSpline(sectimes, z)
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z_i = f_z(sectime_1)
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cs = geo_cs.GEOCCartesian(
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coords={'x': x_i, 'y': y_i, 'z': z_i, 'x_unit': 'km', 'y_unit': 'km', 'z_unit': 'km'}
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)
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cs_new = cs.to_spherical()
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# glat_2 = cs_new['lat']
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glon_2 = cs_new['lon']
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# alt_2 = cs_new['height']
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delta = np.sin(glon_2 * np.pi / 180.) - np.sin(glon_2 * np.pi / 180.)
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if self.replace_orbit:
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glon_1 =
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glon_1 = glon_2
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else:
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glon_1[
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glon_1[np.abs(delta)>0.05] = glon_2[np.abs(delta)>0.05]
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self['SC_GEO_LON'].value = glon_1[:, np.newaxis]
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def search_data_files(self, **kwargs):
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import geospacelab.toolbox.utilities.pybasic as basic
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import geospacelab.toolbox.utilities.pylogging as mylog
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import geospacelab.toolbox.utilities.pydatetime as dttool
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import geospacelab.cs as geo_cs
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from geospacelab.datahub.sources.madrigal.satellites.dmsp.s1.loader import Loader as default_Loader
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from geospacelab.datahub.sources.madrigal.satellites.dmsp.downloader import Downloader as default_Downloader
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import geospacelab.datahub.sources.madrigal.satellites.dmsp.s1.variable_config as var_config
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@@ -179,53 +180,51 @@ class Dataset(datahub.DatasetSourced):
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def fix_geo_lon(self):
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from geospacelab.observatory.orbit.sc_orbit import OrbitPosition_SSCWS
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from scipy.interpolate import
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from scipy.interpolate import CubicSpline
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dts_1 = self['SC_DATETIME'].value.flatten()
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dt0 = dttool.get_start_of_the_day(self.dt_fr)
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sectime_1 = [(dt - dt0).total_seconds() for dt in dts_1]
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glat_1 = self['SC_GEO_LAT'].flatten()
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glon_1 = self['SC_GEO_LON'].flatten()
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alt_1 = self['SC_GEO_ALT'].flatten()
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# check outliers
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orbit_obj = OrbitPosition_SSCWS(
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dt_fr=self.dt_fr - datetime.timedelta(minutes=30),
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dt_to=self.dt_to + datetime.timedelta(minutes=30),
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sat_id='dmsp' + self.sat_id.lower()
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)
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glon_2 = orbit_obj['SC_GEO_LON'].value.flatten()
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dts_2 = orbit_obj['SC_DATETIME'].value.flatten()
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sectime_2 = [(dt - dt0).total_seconds() for dt in dts_2]
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factor = np.pi / 180.
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sin_glon_1 = np.sin(glon_1 * factor)
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sin_glon_2 = np.sin(glon_2 * factor)
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cos_glon_2 = np.cos(glon_2 * factor)
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itpf_sin = interp1d(sectime_2, sin_glon_2, kind='linear', bounds_error=False, fill_value='extrapolate')
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itpf_cos = interp1d(sectime_2, cos_glon_2, kind='linear', bounds_error=False, fill_value='extrapolate')
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sin_glon_2_i = itpf_sin(sectime_1)
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sin_glon_2_i = np.where(sin_glon_2_i > 1., 1., sin_glon_2_i)
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sin_glon_2_i = np.where(sin_glon_2_i < -1., -1., sin_glon_2_i)
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dts = orbit_obj['SC_DATETIME'].flatten()
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sectimes, _ = dttool.convert_datetime_to_sectime(dts, dt0=dt0)
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x = orbit_obj['SC_GEO_X'].flatten()
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y = orbit_obj['SC_GEO_Y'].flatten()
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z = orbit_obj['SC_GEO_Z'].flatten()
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f_x = CubicSpline(sectimes, x)
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x_i = f_x(sectime_1)
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f_y = CubicSpline(sectimes, y)
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y_i = f_y(sectime_1)
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f_z = CubicSpline(sectimes, z)
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z_i = f_z(sectime_1)
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cos_glon_2_i = itpf_cos(sectime_1)
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cos_glon_2_i = np.where(cos_glon_2_i > 1., 1., cos_glon_2_i)
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cos_glon_2_i = np.where(cos_glon_2_i < -1., -1., cos_glon_2_i)
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cs = geo_cs.GEOCCartesian(
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cs_new = cs.to_spherical()
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# glat_2 = cs_new['lat']
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glon_2 = cs_new['lon']
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# alt_2 = cs_new['height']
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delta = np.sin(glon_2 * np.pi / 180.) - np.sin(glon_2 * np.pi / 180.)
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glon_1 = glon_2
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self['SC_GEO_LON'].value = glon_1[:, np.newaxis]
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from scipy.interpolate import
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from scipy.interpolate import CubicSpline
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dts_1 = self['SC_DATETIME'].value.flatten()
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dt0 = dttool.get_start_of_the_day(self.dt_fr)
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sectime_1 = [(dt - dt0).total_seconds() for dt in dts_1]
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glat_1 = self['SC_GEO_LAT'].flatten()
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glon_1 = self['SC_GEO_LON'].flatten()
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alt_1 = self['SC_GEO_ALT'].flatten()
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orbit_obj = OrbitPosition_SSCWS(
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dt_fr=self.dt_fr - datetime.timedelta(minutes=30),
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dt_to=self.dt_to + datetime.timedelta(minutes=30),
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sat_id='dmsp' + self.sat_id.lower()
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y = orbit_obj['SC_GEO_Y'].flatten()
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x_i = f_x(sectime_1)
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f_y = CubicSpline(sectimes, y)
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cs_new = cs.to_spherical()
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# glat_2 = cs_new['lat']
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glon_2 = cs_new['lon']
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# alt_2 = cs_new['height']
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delta = np.sin(glon_2 * np.pi / 180.) - np.sin(glon_2 * np.pi / 180.)
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self['SC_GEO_LON'].value = glon_1[:, np.newaxis]
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# from geospacelab.observatory.orbit.sc_orbit import OrbitPosition_SSCWS
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# from scipy.interpolate import interp1d
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# # check outliers
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# orbit_obj = OrbitPosition_SSCWS(
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# dt_fr=self.dt_fr - datetime.timedelta(minutes=30),
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# dt_to=self.dt_to + datetime.timedelta(minutes=30),
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# sat_id='dmsp' + self.sat_id.lower()
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# )
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# glat_1 = self['SC_GEO_LAT'].value.flatten()
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# glon_1 = self['SC_GEO_LON'].value.flatten()
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# if glat_1.size < 2:
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# return
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# dts_1 = self['SC_DATETIME'].value.flatten()
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# dt0 = dttool.get_start_of_the_day(self.dt_fr)
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# sectime_1 = [(dt - dt0).total_seconds() for dt in dts_1]
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# glat_2 = orbit_obj['SC_GEO_LAT'].value.flatten()
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# glon_2 = orbit_obj['SC_GEO_LON'].value.flatten()
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# dts_2 = orbit_obj['SC_DATETIME'].value.flatten()
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# sectime_2 = [(dt - dt0).total_seconds() for dt in dts_2]
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# factor = np.pi / 180.
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# sin_glon_1 = np.sin(glon_1 * factor)
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# sin_glon_2 = np.sin(glon_2 * factor)
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# cos_glon_2 = np.cos(glon_2 * factor)
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# itpf_sin = interp1d(sectime_2, sin_glon_2, kind='linear', bounds_error=False, fill_value='extrapolate')
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# itpf_cos = interp1d(sectime_2, cos_glon_2, kind='linear', bounds_error=False, fill_value='extrapolate')
|
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|
+
# sin_glon_2_i = itpf_sin(sectime_1)
|
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+
# cos_glon_2_i = itpf_cos(sectime_1)
|
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|
+
# rad = np.sign(sin_glon_2_i) * (np.pi / 2 - np.arcsin(cos_glon_2_i))
|
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|
+
# glon_new = rad / factor
|
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|
+
# # rad = np.where((rad >= 0), rad, rad + 2 * numpy.pi)
|
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234
|
+
|
|
235
|
+
# ind_outliers = np.where(np.abs(sin_glon_1 - sin_glon_2_i) > 0.03)[0]
|
|
236
|
+
|
|
237
|
+
# if self.replace_orbit:
|
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|
+
# glon_1 = glon_new
|
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239
|
+
# else:
|
|
240
|
+
# glon_1[ind_outliers] = glon_new[ind_outliers]
|
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241
|
+
# self['SC_GEO_LON'].value = glon_1.reshape((glon_1.size, 1))
|
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242
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196
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|
def search_data_files(self, **kwargs):
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@@ -270,6 +270,8 @@ def data_resample(
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# grid_z_1[i, :] = z_i
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|
def regridding_2d_xgaps(
|
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276
|
x, y, z,
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|
xtype=None, xres=None):
|
|
@@ -281,13 +283,28 @@ def regridding_2d_xgaps(
|
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283
|
x1 = sectime
|
|
282
284
|
|
|
283
285
|
diff_x = numpy.diff(x1)
|
|
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|
+
x_res_md = numpy.median(diff_x)
|
|
284
287
|
if xres is None:
|
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285
|
-
xres =
|
|
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|
+
xres = x_res_md
|
|
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289
|
|
|
287
290
|
if xtype == 'datetime' and basic.isnumeric(xres):
|
|
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291
|
xres = datetime.timedelta(seconds=xres)
|
|
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|
+
x_res_md = datetime.timedelta(seconds=x_res_md)
|
|
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|
+
|
|
294
|
+
xx_1 = np.empty_like(x)
|
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|
+
xx_2 = np.empty_like(x)
|
|
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|
+
for i, xxx in enumerate(x):
|
|
297
|
+
if i == 0:
|
|
298
|
+
xx_1[0] = xxx - np.min([datetime.timedelta(diff_x[0]), xres, x_res_md]) / 2
|
|
299
|
+
else:
|
|
300
|
+
xx_1[i] = xx_2[i-1] if xres > datetime.timedelta(seconds=diff_x[i-1]) else xxx - xres / 2
|
|
289
301
|
|
|
290
|
-
|
|
302
|
+
if i == len(x) - 1:
|
|
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|
+
xx_2[i] = xxx + np.min([datetime.timedelta(diff_x[i-1]), xres, x_res_md]) / 2
|
|
304
|
+
else:
|
|
305
|
+
xx_2[i] = xxx + np.min([datetime.timedelta(diff_x[i]), xres, x_res_md]) / 2
|
|
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|
+
|
|
307
|
+
xx = numpy.hstack((xx_1[:, numpy.newaxis], xx_2[:, numpy.newaxis]))
|
|
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308
|
xnew = xx.flatten()
|
|
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309
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|
if len(y.shape) == 1 or 1 in y.shape:
|
|
@@ -1,4 +1,4 @@
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1
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-
geospacelab/__init__.py,sha256=
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1
|
+
geospacelab/__init__.py,sha256=z281cx-p62AcwL0TBdP-2pheA_u9DVw85sGurChtXrc,801
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2
2
|
geospacelab/config/__init__.py,sha256=--F2bcKRCNIbPaFz4bySMkuxGg1ZxF1j1uyxMA0t3xA,660
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3
3
|
geospacelab/config/__mpl__.py,sha256=bO10-mtYDF1EhnRFuXX4H8TUU3esxOZe-qfTrzRhBk0,4705
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4
4
|
geospacelab/config/_preferences.py,sha256=VKXXWNvFzIMXGmvb7Udd900DoubMlqrcu-gLmzHmzMk,4754
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@@ -7,7 +7,7 @@ geospacelab/coords/geo_utilities.py,sha256=7_C98Cd29tzNl86kdWYmVC8UBS8E07oJIR6Ma
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7
7
|
geospacelab/cs/__init__.py,sha256=lzPhfypd0EfsOJnKsrrK2dQo3sxj8lpblYEhpz2i9xA,1282
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8
8
|
geospacelab/cs/_aacgm.py,sha256=6NmY_CVnECs-xZo1y2q3eglBc-ZrK-0SWtj6247Xq1E,723
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9
9
|
geospacelab/cs/_apex.py,sha256=9S-I0MMV5aU_MBO6Pi0AnFCGumfwIravW_VnGONvGYE,756
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|
-
geospacelab/cs/_cs_base.py,sha256=
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10
|
+
geospacelab/cs/_cs_base.py,sha256=bERqTF1uNLUFA3F1ySccyJt-t1Dhu1_B1E7-prrgV5o,17178
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|
11
11
|
geospacelab/cs/_geo.py,sha256=cLrb2r-xD5aVwKENUzaFVV71tPpOC21zCmUIQmf67eg,18242
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|
geospacelab/cs/geo_utilities.py,sha256=RWsioSB6_n3bT502ONho8eyJaFfFVmNBv1T0RwOPD64,604
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13
|
geospacelab/datahub/__dataset_base__.py,sha256=XPcwlfIXNFeoqQoe_PNNNfKW8pPI7rEz3bdrVqLPSCQ,20616
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@@ -196,13 +196,13 @@ geospacelab/datahub/sources/madrigal/isr/risr_n/vi/variable_config.py,sha256=dE-
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geospacelab/datahub/sources/madrigal/satellites/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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geospacelab/datahub/sources/madrigal/satellites/dmsp/__init__.py,sha256=YnuaB5J_ER8LrLUFghlty0YHYnmd9_2IHNW9TBQLaSI,487
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|
geospacelab/datahub/sources/madrigal/satellites/dmsp/downloader.py,sha256=jnA8XpiD-bhi5lM1p1er93D-kS7aE8XgYZVVGcE0Aho,4886
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geospacelab/datahub/sources/madrigal/satellites/dmsp/e/__init__.py,sha256=
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geospacelab/datahub/sources/madrigal/satellites/dmsp/e/__init__.py,sha256=Csf-c864DxJXDjq9TL5YDF-8A97zVIdT8K8jerU45I4,10212
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geospacelab/datahub/sources/madrigal/satellites/dmsp/e/loader.py,sha256=kZ9AeI0LsNWS26Kwfp6azvDl2IutcWKBPDd6o0tKASc,4902
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geospacelab/datahub/sources/madrigal/satellites/dmsp/e/variable_config.py,sha256=exp1bYVmDBVlIbraeNgAuVEnjxg5IC2ED1cZIEiPj1U,10280
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geospacelab/datahub/sources/madrigal/satellites/dmsp/s1/__init__.py,sha256=
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+
geospacelab/datahub/sources/madrigal/satellites/dmsp/s1/__init__.py,sha256=iPtRE0QJ-Fq6Bit5xRRDXYigQr_DKl6DA7F_GRFofuU,11171
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geospacelab/datahub/sources/madrigal/satellites/dmsp/s1/loader.py,sha256=o5zEkosq7LyNlBIjlefKUpYpePCDbyL_yd3HrrUrk5Q,3360
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geospacelab/datahub/sources/madrigal/satellites/dmsp/s1/variable_config.py,sha256=Amp90wHogRQOESLH2b4D0jfeBozIKvvOnwx-_waU0us,6745
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geospacelab/datahub/sources/madrigal/satellites/dmsp/s4/__init__.py,sha256=
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geospacelab/datahub/sources/madrigal/satellites/dmsp/s4/__init__.py,sha256=85NIwKVTIB8nCmwzV_qk6dKeC4glIddjha6KQZXba64,12043
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|
geospacelab/datahub/sources/madrigal/satellites/dmsp/s4/loader.py,sha256=LL8IAMwmgQX06lgVECh6Rx6TGXEoHmAkFDmouJ6kQOo,3229
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geospacelab/datahub/sources/madrigal/satellites/dmsp/s4/variable_config.py,sha256=4DhvQxFonoYiU_3f9ObE2OkJOXDkHfw0RUMHa3FLTv4,4054
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geospacelab/datahub/sources/ncei/__init__.py,sha256=MHpNJ-PJBjywheG5CZDgj89fsxVG5qSxi_vkTsxibd8,658
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@@ -331,7 +331,7 @@ geospacelab/toolbox/io/__init__.py,sha256=YcFkmOGWXNiOXWsMFxFPhn32UnbxmeSrluTp6O
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geospacelab/toolbox/io/dialog.py,sha256=y87PKCXQS5_axbrNuVrcYN2uIfr-ZHICr7yMQ0yH1M4,1067
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geospacelab/toolbox/unit/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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geospacelab/toolbox/utilities/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
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geospacelab/toolbox/utilities/numpyarray.py,sha256=
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+
geospacelab/toolbox/utilities/numpyarray.py,sha256=Sr7j5Kfe_vtc185GUX99olkML1Ld81jN6YmrNPX1wcM,12448
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geospacelab/toolbox/utilities/numpymath.py,sha256=xr-u9vsN5UMZ6pjomJ2O3A1n00Eg3yH5fN4lcY7rR_Q,3810
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|
geospacelab/toolbox/utilities/pybasic.py,sha256=-wLWoQMTroJ49nn8H_-hsFxDSiHXMiea86U6u0W8_cM,3310
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geospacelab/toolbox/utilities/pyclass.py,sha256=DnnzLH1ovlxArtqCpywZUfDoNzYi7HmMW2s17Xd30LI,2813
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@@ -382,7 +382,7 @@ geospacelab/wrapper/geopack/geopack/t89.py,sha256=zDVNPrmtK1NnNHgohQEPqOOJDsm2Z-
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382
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geospacelab/wrapper/geopack/geopack/t96.py,sha256=ktcoo1R7Z3NtkWHENuseu48ub4-JfQGqFV0ZOtd0zH8,65292
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383
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|
geospacelab/wrapper/geopack/geopack/test_geopack1.md,sha256=dMUY0O1BgZsKpmJ6BLSQ80B6p6DZcB7OceFeyPOlFK0,15324
|
|
384
384
|
geospacelab/wrapper/geopack/geopack/test_geopack1.py,sha256=qjLz6O3BAk3H58IpmxXyftwZTkh3vPGp49C-al4hjf0,6669
|
|
385
|
-
geospacelab-0.11.
|
|
385
|
+
geospacelab-0.11.2.dist-info/licenses/LICENSE,sha256=2yRlwLt4o5Z6OZAGcyvBj-zfFX1Uw7E6CzqODg7khqs,1515
|
|
386
386
|
test/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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387
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test/test_ampere.py,sha256=0-HZURubpv1mBK3bJ_qTqx39L1jezgRoU5neXMPYgZQ,2968
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|
test/test_dmsp_s1.py,sha256=5m_7mjdDGja8ovshNPV3LKW_6q6mIwT9XKqoyRiH79A,3588
|
|
@@ -392,7 +392,7 @@ test/test_omni.py,sha256=Zk1LZozPiY5V0aSRmK6GTQuB01hHn_j2j3Brm6Ea_po,1632
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|
392
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|
test/test_superdarn.py,sha256=uP55muvXryPzNGHinWkiGv2PxvRs4f9M9h1WIBEBW7k,2846
|
|
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393
|
test/test_swarm.py,sha256=PDDE9nUshhQpXZbV_ZwcsjbMhI73fRaojTZv9rtRzZE,15568
|
|
394
394
|
test/test_swarm_new.py,sha256=mzhMAx-M9W3Ue5noTyfBx4c3Vtc3b_ZUEvGgL9v8UE4,853
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395
|
-
geospacelab-0.11.
|
|
396
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-
geospacelab-0.11.
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397
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-
geospacelab-0.11.
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398
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-
geospacelab-0.11.
|
|
395
|
+
geospacelab-0.11.2.dist-info/METADATA,sha256=nnc9SDt62JaF_T7Aq4gqQrFiXIhdB4_zy-tEw-DAexU,24238
|
|
396
|
+
geospacelab-0.11.2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
|
|
397
|
+
geospacelab-0.11.2.dist-info/top_level.txt,sha256=98eDwrSNgyQFAtSA06QMP71gw9BzgIj0uvkTudpGly4,12
|
|
398
|
+
geospacelab-0.11.2.dist-info/RECORD,,
|
|
File without changes
|
|
File without changes
|
|
File without changes
|