geoseeq 0.7.2__py3-none-any.whl → 0.7.3.dev1__py3-none-any.whl

geoseeq/cli/main.py

@@ -1,35 +1,33 @@
-
 import logging
 
 import click
 
+from geoseeq.knex import DEFAULT_ENDPOINT
+from geoseeq.utils import set_profile
 
 from .copy import cli_copy
-from .manage import cli_manage
+from .detail import cli_detail
 from .download import cli_download
+from .find_grn import cli_find_grn
+from .get_eula import cli_eula
+from .manage import cli_manage
+from .run import cli_app
+from .search import cli_search
+from .shared_params.opts_and_args import overwrite_option, yes_option
 from .upload import cli_upload, cli_upload_advanced
 from .user import cli_user
 from .view import cli_view
-from .search import cli_search
-
-from geoseeq.knex import DEFAULT_ENDPOINT
-from geoseeq.utils import set_profile
-from .shared_params.opts_and_args import overwrite_option, yes_option
-from .detail import cli_detail
-from .run import cli_app
-from .get_eula import cli_eula
-from .find_grn import cli_find_grn
 
-logger = logging.getLogger('geoseeq_api')
+logger = logging.getLogger("geoseeq_api")
 handler = logging.StreamHandler()
-handler.setFormatter(logging.Formatter('[%(levelname)s] %(name)s :: %(message)s'))
+handler.setFormatter(logging.Formatter("[%(levelname)s] %(name)s :: %(message)s"))
 logger.addHandler(handler)
 
 
-@click.group(context_settings={'show_default': True})
+@click.group(context_settings={"show_default": True})
 def main():
     """Command line interface for the GeoSeeq API.
-    
+
     ---
 
     Use of this tool implies acceptance of the GeoSeeq End User License Agreement.
@@ -37,6 +35,7 @@ def main():
     """
     pass
 
+
 main.add_command(cli_download)
 main.add_command(cli_upload)
 main.add_command(cli_manage)
@@ -46,86 +45,105 @@ main.add_command(cli_app)
 main.add_command(cli_eula)
 main.add_command(cli_find_grn)
 
+
 @main.command()
 def version():
     """Print the version of the Geoseeq API being used.
 
     ---
-    
+
     Use of this tool implies acceptance of the GeoSeeq End User License Agreement.
     Run `geoseeq eula show` to view the EULA.
     """
-    click.echo('0.7.2')  # remember to update pyproject.toml
+    click.echo("0.7.3dev0")  # remember to update pyproject.toml
 
 
-@main.group('advanced')
+@main.group("advanced")
 def cli_advanced():
     """Advanced commands."""
     pass
 
+
 cli_advanced.add_command(cli_copy)
 cli_advanced.add_command(cli_user)
 cli_advanced.add_command(cli_detail)
 cli_advanced.add_command(cli_upload_advanced)
 
-@cli_advanced.group('experimental')
+
+@cli_advanced.group("experimental")
 def cli_experimental():
     """Experimental commands."""
     pass
 
 
-
 try:
     from geoseeq.vc.cli import cli_vc
+
     from .project import cli_project
+
     cli_experimental.add_command(cli_vc)
     cli_advanced.add_command(cli_project)
 
 except (ModuleNotFoundError, ImportError):
     pass
 
-@main.command('config')
+
+@main.command("config")
 @yes_option
-@click.option('--api-token', default=None, help='The API token to use.')
-@click.option('--endpoint', default=None, help='The endpoint to use.')
-@click.option('-p', '--profile', default=None, help='The profile name to use.')
+@click.option("--api-token", default=None, help="The API token to use.")
+@click.option("--endpoint", default=None, help="The endpoint to use.")
+@click.option("-p", "--profile", default=None, help="The profile name to use.")
 @overwrite_option
 def cli_config(yes, api_token, endpoint, profile, overwrite):
     """Configure the GeoSeeq API.
 
     ---
-    
+
     Use of this tool implies acceptance of the GeoSeeq End User License Agreement.
     Run `geoseeq eula show` to view the EULA.
     """
     if not profile and not yes:
-        profile = click.prompt(f'Set custom profile name? (Leave blank for default)', default="").strip(' \"\'')
+        profile = click.prompt(
+            f"Set custom profile name? (Leave blank for default)", default=""
+        ).strip(" \"'")
     if not endpoint:
         endpoint = DEFAULT_ENDPOINT
         if not yes:
-            endpoint = click.prompt(f'Enter the URL to use for GeoSeeq (Most users can use the default)', default=DEFAULT_ENDPOINT).strip(' \"\'')
+            endpoint = click.prompt(
+                f"Enter the URL to use for GeoSeeq (Most users can use the default)",
+                default=DEFAULT_ENDPOINT,
+            ).strip(" \"'")
     if not api_token:
-        api_token = click.prompt(f'Enter your GeoSeeq API token', hide_input=True).strip(' \"\'')
+        api_token = click.prompt(
+            f"Enter your GeoSeeq API token", hide_input=True
+        ).strip(" \"'")
     if not yes:
-        eula_accepted = click.confirm(f'Have you read and accepted the GeoSeeq End User License Agreement? Use `geoseeq eula show` to view the EULA.')
+        eula_accepted = click.confirm(
+            (
+                "Have you read and accepted the GeoSeeq End User License "
+                "Agreement? Use `geoseeq eula show` to view the EULA."
+            )
+        )
         if not eula_accepted:
-            click.echo('You must accept the EULA to use the GeoSeeq API.')
+            click.echo("You must accept the EULA to use the GeoSeeq API.")
             return
     set_profile(api_token, endpoint=endpoint, profile=profile, overwrite=overwrite)
-    click.echo(f'Profile configured.')
+    click.echo(f"Profile configured.")
 
 
-@main.command('clear-cache')
+@main.command("clear-cache")
 @yes_option
 def cli_clear_cache(yes):
     """Clear the local cache.
 
     ---
-    
+
     Use of this tool implies acceptance of the GeoSeeq End User License Agreement.
     Run `geoseeq eula show` to view the EULA.
     """
-    from geoseeq.file_system_cache import GEOSEEQ_CACHE_DIR
     import shutil
-    if yes or click.confirm('Are you sure you want to clear the cache?'):
-        shutil.rmtree(GEOSEEQ_CACHE_DIR, ignore_errors=True)
+
+    from geoseeq.file_system_cache import GEOSEEQ_CACHE_DIR
+
+    if yes or click.confirm("Are you sure you want to clear the cache?"):
+        shutil.rmtree(GEOSEEQ_CACHE_DIR, ignore_errors=True)

geoseeq/dashboard/dashboard.py

@@ -1,10 +1,10 @@
-
 import logging
-import json
 from typing import Literal
-from geoseeq.remote_object import RemoteObject
-from geoseeq.id_constructors import result_file_from_blob
+
 from geoseeq import ProjectResultFile
+from geoseeq.id_constructors import result_file_from_blob
+from geoseeq.id_constructors.from_ids import result_file_from_id
+from geoseeq.remote_object import RemoteObject
 
 logger = logging.getLogger("geoseeq_api")
 
@@ -30,20 +30,31 @@ class Dashboard(RemoteObject):
         blob.pop("tiles")
         self.load_blob(blob, allow_overwrite=allow_overwrite)
 
-    def _save(self):
+    def save(self):
         self.save_tiles()
-    
+
     def save_tiles(self):
         post_data = {"tiles": [tile._get_post_data() for tile in self.tiles]}
-        blob = self.knex.post(f"sample_groups/{self.project.uuid}/dashboard/{self.name}/tiles", json=post_data, json_response=False)
+        blob = self.knex.post(
+            f"sample_groups/{self.project.uuid}/dashboard/{self.name}/tiles",
+            json=post_data,
+            json_response=False,
+        )
         print(blob)
-    
+
     def _create(self):
         post_data = {"name": self.name, "is_default": self.is_default}
-        blob = self.knex.post(f"sample_groups/{self.project.uuid}/dashboard", json=post_data)
+        blob = self.knex.post(
+            f"sample_groups/{self.project.uuid}/dashboard", json=post_data
+        )
         self.load_blob(blob)
-    
-    def tile(self, title, result_file, style: Literal["col-span-1", "col-span-2"]="col-span-1"):
+
+    def tile(
+        self,
+        title,
+        result_file,
+        style: Literal["col-span-1", "col-span-2"] = "col-span-1",
+    ):
         result_file.get()
         tile = DashboardTile(self.knex, self, title, result_file, style=style)
         self.tiles.append(tile)
@@ -59,21 +70,20 @@ class Dashboard(RemoteObject):
         return self._name
 
     def __str__(self):
-        return f"<Geoseeq Dashboard: {self.project.grn} \"{self.name}\"/>"
-    
+        return f'<Geoseeq Dashboard: {self.project.grn} "{self.name}"/>'
+
     def __repr__(self):
         return str(self)
-    
+
     @property
     def grn(self):
-        return f"grn:dashboard:{self.project.uuid}:\"{self.name}\""
-    
+        return f'grn:dashboard:{self.project.uuid}:"{self.name}"'
+
     def pre_hash(self):
         return "DASH" + self.project.uuid + self.name
 
 
 class DashboardTile:
-
     def __init__(self, knex, dashboard, title, result_file, style="col-span-1"):
         self.knex = knex
         self.dashboard = dashboard
@@ -82,9 +92,11 @@ class DashboardTile:
         self.result_file = result_file
 
     def _get_post_data(self):
-        out =  {
+        out = {
             "field_uuid": self.result_file.uuid,
-            "field_type": "group" if isinstance(self.result_file, ProjectResultFile) else "sample",
+            "field_type": (
+                "group" if isinstance(self.result_file, ProjectResultFile) else "sample"
+            ),
             "style": self.style,
             "title": self.title,
             "has_related_field": False,
@@ -93,11 +105,157 @@ class DashboardTile:
 
     @classmethod
     def from_blob(cls, dashboard, blob):
-        result_file = result_file_from_blob(blob["viz_field"])
-        return cls(dashboard.knex, dashboard, blob["title"], result_file, style=blob["style"])
-    
+        result_file = result_file_from_blob(dashboard.knex, blob["viz_field"])
+        return cls(
+            dashboard.knex, dashboard, blob["title"], result_file, style=blob["style"]
+        )
+
+    def __str__(self) -> str:
+        return f'<Geoseeq DashboardTile: {self.dashboard.grn} "{self.title}" />'
+
+    def __repr__(self) -> str:
+        return str(self)
+
+
+class SampleDashboard(RemoteObject):
+    """Dashboard client for a single sample."""
+
+    parent_field = "sample"
+    remote_fields = ["uuid", "title", "default", "created_at", "updated_at"]
+
+    def __init__(self, knex, sample, title="Default dashboard", default=False):
+        super().__init__(self)
+        self.knex = knex
+        self.sample = sample
+        self.title = title
+        self.tiles = []
+        self.default = default
+
+    def _get(self, allow_overwrite=False):
+        blob = self.knex.get(f"samples/{self.sample.uuid}/dashboards")
+        try:
+            blob = [
+                dashboard_blob
+                for dashboard_blob in blob["results"]
+                if dashboard_blob["title"] == self.title
+            ][0]
+        except IndexError:
+            raise ValueError(f"There is no existing dashboard with title {self.title}")
+
+        self.load_blob(blob, allow_overwrite=allow_overwrite)
+
+        # Load tiles
+        tiles_res = self.knex.get(f"samples/dashboards/{self.uuid}/tiles")
+        for tile_blob in tiles_res["results"]:
+            tile = SampleDashboardTile.from_blob(self, tile_blob)
+            self.tiles.append(tile)
+
+    def save(self):
+        data = self._get_post_data()
+        url = f"samples/{self.sample.uuid}/dashboards/{self.uuid}"
+        self.knex.put(url, json=data)
+        self.save_tiles()
+
+    def save_tiles(self):
+        post_data = {"tiles": [tile._get_post_data() for tile in self.tiles]}
+        self.knex.put(
+            f"samples/dashboards/{self.uuid}/tiles",
+            json=post_data,
+            json_response=False,
+        )
+
+    def delete(self):
+        self.knex.delete(f"samples/{self.sample.uuid}/dashboards/{self.uuid}")
+        self._already_fetched = False
+        self._deleted = True
+
+    def _create(self):
+        post_data = {
+            "title": self.title,
+            "sample": self.sample.uuid,
+            "default": self.default,
+        }
+        blob = self.knex.post(f"samples/{self.sample.uuid}/dashboards", json=post_data)
+        self.load_blob(blob)
+
+    def _get_post_data(self):
+        out = {
+            "sample": self.sample.uuid,
+            "title": self.title,
+            "default": self.default,
+        }
+        return out
+
+    def add_tile(self, result_file, title, width="half", order=None):
+        result_file.get()
+        tile = SampleDashboardTile(
+            self.knex, self, title, result_file, width=width, order=order
+        )
+        self.tiles.append(tile)
+        self._modified = True
+
+    @classmethod
+    def from_blob(cls, sample, blob):
+        instance = cls(
+            sample.knex,
+            sample,
+            blob["title"],
+            blob["default"],
+        )
+        instance.uuid = blob["uuid"]
+        return instance
+
+    @property
+    def name(self):
+        return self.title
+
+    def __str__(self):
+        return f'<Geoseeq SampleDashboard: {self.sample.brn} "{self.name}"/>'
+
+    def __repr__(self):
+        return str(self)
+
+    @property
+    def grn(self):
+        return f'grn:dashboard:{self.sample.uuid}:"{self.name}"'
+
+    def pre_hash(self):
+        return "DASH" + self.sample.uuid + self.name
+
+
+class SampleDashboardTile:
+    def __init__(self, knex, dashboard, title, result_file, width="half", order=None):
+        self.knex = knex
+        self.dashboard = dashboard
+        self.title = title
+        self.width = width
+        self.result_file = result_file
+        self.order = order
+
+    def _get_post_data(self):
+        out = {
+            "field": self.result_file.uuid,
+            "dashboard": self.dashboard.uuid,
+            "width": self.width,
+            "title": self.title,
+            "order": self.order,
+        }
+        return out
+
+    @classmethod
+    def from_blob(cls, dashboard, blob):
+        result_file = result_file_from_id(dashboard.knex, blob["field_obj"]["uuid"])
+        return cls(
+            dashboard.knex,
+            dashboard,
+            blob["title"],
+            result_file,
+            width=blob["width"],
+            order=blob["order"],
+        )
+
     def __str__(self) -> str:
-        return f"<Geoseeq DashboardTile: {self.dashboard.grn} \"{self.title}\" />"
-    
+        return f'<Geoseeq DashboardTile: {self.dashboard.grn} "{self.title}" />'
+
     def __repr__(self) -> str:
-        return str(self)
+        return str(self)

geoseeq/project.py

@@ -358,4 +358,9 @@ class Project(RemoteObject):
     def grn(self):
         return f"grn::project:{self.uuid}"
 
+    def set_description(self, description):
+        self.description = description
+        self._modified = True
+        return self
+
 SampleGroup = Project  # alias for backwards compatibility

geoseeq/sample.py

@@ -1,5 +1,4 @@
 import urllib
-
 from .remote_object import RemoteObject
 from .result import SampleResultFile, SampleResultFolder
 
@@ -32,7 +31,7 @@ class Sample(RemoteObject):
 
     @property
     def brn(self):
-        return f'brn:{self.knex.instance_code()}:sample:{self.uuid}'
+        return f"brn:{self.knex.instance_code()}:sample:{self.uuid}"
 
     def nested_url(self):
         escaped_name = urllib.parse.quote(self.name, safe="")
@@ -63,15 +62,19 @@ class Sample(RemoteObject):
             self.load_blob(blob, allow_overwrite=allow_overwrite)
 
     def get_post_data(self):
-        data = {field: getattr(self, field) for field in self.remote_fields if hasattr(self, field)}
+        data = {
+            field: getattr(self, field)
+            for field in self.remote_fields
+            if hasattr(self, field)
+        }
         data["library"] = self.lib.uuid
         if self.new_lib:
             if isinstance(self.new_lib, RemoteObject):
                 data["library"] = self.new_lib.uuid
             else:
                 data["library"] = self.new_lib
-        if data['uuid'] is None:
-            data.pop('uuid')
+        if data["uuid"] is None:
+            data.pop("uuid")
         return data
 
     def _create(self):
@@ -96,10 +99,10 @@ class Sample(RemoteObject):
 
     def analysis_result(self, *args, **kwargs):
         """Return a SampleResultFolder for this sample.
-        
+
         This is an alias for result_folder."""
         return self.result_folder(*args, **kwargs)
-    
+
     def get_result_folders(self, cache=True):
         """Yield sample analysis results fetched from the server."""
         self.get()
@@ -107,7 +110,7 @@ class Sample(RemoteObject):
             for ar in self._get_result_cache:
                 yield ar
             return
-        url =  f"sample_ars?sample_id={self.uuid}"
+        url = f"sample_ars?sample_id={self.uuid}"
         result = self.knex.get(url)
         for result_blob in result["results"]:
             result = self.analysis_result(result_blob["module_name"])
@@ -126,7 +129,7 @@ class Sample(RemoteObject):
 
     def get_analysis_results(self, cache=True):
         """Yield sample analysis results fetched from the server.
-        
+
         This is an alias for get_result_folders.
         """
         return self.get_result_folders(cache=cache)
@@ -135,14 +138,15 @@ class Sample(RemoteObject):
         """Return a manifest for this sample."""
         url = f"samples/{self.uuid}/manifest"
         return self.knex.get(url)
-    
+
     def _grn_to_file(self, grn):
         from geoseeq.id_constructors.from_blobs import sample_result_file_from_blob
+
         file_uuid = grn.split(":")[-1]
         file_blob = self.knex.get(f"sample_ar_fields/{file_uuid}")
         file = sample_result_file_from_blob(self.knex, file_blob)
         return file
-    
+
     def get_one_fastq(self):
         """Return a 2-ple, a fastq ResultFile and a string with the read type.
 
@@ -152,10 +156,10 @@ class Sample(RemoteObject):
         blob = self.knex.get(url)
         file = self._grn_to_file(blob["grn"])
         return file, blob["read_type"]
-    
+
     def get_one_fastq_folder(self, preference_order=None):
         """Return a 3-ple, <read_type:str>, <folder_name:str>, a list with reads.
-        
+
         If the read type is paired end, the list will contain 2-ples with reads.
 
         Default preference order is:
@@ -175,7 +179,7 @@ class Sample(RemoteObject):
                 for folder_name, reads in all_fastqs[read_type].items():
                     return read_type, folder_name, reads
         raise ValueError("No suitable fastq found")
-    
+
     def get_all_fastqs(self):
         """Return a dict with the following structure:
 
@@ -217,7 +221,7 @@ class Sample(RemoteObject):
                         self._grn_to_file(file_grns[0])
                     )
         return files
-    
+
     def get_one_fasta(self):
         """Return a 2-ple, a fasta ResultFile and a string with the read type.
 
@@ -228,6 +232,70 @@ class Sample(RemoteObject):
         file = self._grn_to_file(blob["grn"])
         return file, blob["read_type"]
 
+    def create_dashboard(self, title="Default dashboard", default=False):
+        from geoseeq.dashboard.dashboard import SampleDashboard
+
+        post_data = {
+            "title": title,
+            "sample": self.uuid,
+            "default": default,
+        }
+        blob = self.knex.post(f"samples/{self.uuid}/dashboards", json=post_data)
+        dashboard = SampleDashboard(
+            self.knex, self, title=blob["title"], default=blob["default"]
+        )
+        dashboard.uuid = blob["uuid"]
+        dashboard._already_fetched = True
+        return dashboard
+
+    def get_default_dashbaord(self):
+        from geoseeq.dashboard.dashboard import SampleDashboard
+
+        dashboard_resp = self.knex.get(f"samples/{self.uuid}/dashboards")
+        try:
+            blob = [
+                dashboard_blob
+                for dashboard_blob in dashboard_resp["results"]
+                if dashboard_blob["default"] == True
+            ][0]
+            dashboard = SampleDashboard.from_blob(self, blob)
+            dashboard.get()  # Tiles are not in the blob
+            return dashboard
+        except IndexError:
+            pass
+        return None
+
+    def get_or_create_default_dashbaord(self):
+        default_dashboard = self.get_default_dashbaord()
+        if default_dashboard:
+            return default_dashboard
+        else:
+            return self.create_dashboard(default=True)
+
+    def get_dashbaord_by_title(self, title):
+        from geoseeq.dashboard.dashboard import SampleDashboard
+
+        dashboard_resp = self.knex.get(f"samples/{self.uuid}/dashboards")
+        try:
+            blob = [
+                dashboard_blob
+                for dashboard_blob in dashboard_resp["results"]
+                if dashboard_blob["title"] == title
+            ][0]
+            dashboard = SampleDashboard.from_blob(self, blob)
+            dashboard.get()  # Tiles are not in the blob
+            return dashboard
+        except IndexError:
+            pass
+        return None
+
+    def get_or_create_dashbaord_by_title(self, title):
+        default_dashboard = self.get_dashbaord_by_title(title)
+        if default_dashboard:
+            return default_dashboard
+        else:
+            return self.create_dashboard(title=title)
+
     def __str__(self):
         return f"<Geoseeq::Sample {self.name} {self.uuid} />"
 

{geoseeq-0.7.2.dist-info → geoseeq-0.7.3.dev1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: geoseeq
-Version: 0.7.2
+Version: 0.7.3.dev1
 Summary: GeoSeeq command line tools and python API
 Project-URL: Homepage, https://github.com/biotia/geoseeq_api_client
 Project-URL: Issues, https://github.com/biotia/geoseeq_api_client/issues
@@ -44,7 +44,7 @@ Download this directory and run `python setup.py install`
 
 ---
 
-## Using the Command Line 
+## Using the Command Line
 
 Run the command line by typing `geoseeq` into a terminal prompt. See available options by adding `--help`
 
@@ -60,7 +60,7 @@ Once you have a token you will need to configure GeoSeeq to use it. Run `geoseeq
 
 ```
 $ geoseeq config
-Set custom profile name? (Leave blank for default) []: 
+Set custom profile name? (Leave blank for default) []:
 Enter the URL to use for GeoSeeq (Most users can use the default) [https://backend.geoseeq.com]:
 Enter your GeoSeeq API token:
 Profile configured.
@@ -82,11 +82,11 @@ $ geoseeq download files --extension fastq.gz "GeoSeeq/Example CLI Project"
 
 #### Uploading sequencing data
 
-GeoSeeq can automatically group fastq files into samples according to their 
+GeoSeeq can automatically group fastq files into samples according to their
 sample name, read number, and lane number. It supports paired end, single end,
 and nanopore reads.
 
-Assume you have data from a single ended sequencing run stored as fastq files: 
+Assume you have data from a single ended sequencing run stored as fastq files:
  - Sample1_L1_R1.fastq.gz
  - Sample1_L1_R2.fastq.gz
  - Sample1_L2_R1.fastq.gz
@@ -119,8 +119,13 @@ Note: You will need to have an API token set to use this command (see above)
 
 ## Using the Python API in a program
 
+
 Please see `geoseeq_api/cli/download.py` for examples of how to download data using the Python API directly.
 
+## Development in GitHub Codespaces
+
+This repository includes a `.devcontainer` configuration so it can be opened directly in [GitHub Codespaces](https://docs.github.com/codespaces). When the codespace is created the development dependencies are installed and `pre-commit` hooks are set up automatically.
+
 ---
 
 ## Notes

{geoseeq-0.7.2.dist-info → geoseeq-0.7.3.dev1.dist-info}/RECORD

@@ -7,9 +7,9 @@ geoseeq/file_system_cache.py,sha256=HzVZWtwLD2fjWWSo_UfWmGeBltm9He4lP_OqzKwNGWg,
 geoseeq/knex.py,sha256=zcjafsmUn9SC3LlRnvvaXpr-pHYZ0IXk7LpzuUoE3MI,8312
 geoseeq/organization.py,sha256=bJkYL8_D-k6IYAaii2ZbxjwYnXy6lvu6iLXscxKlA3w,2542
 geoseeq/pipeline.py,sha256=89mhWaecsKnm6tyRkdkaVp4dmZh62_v42Ze0oXf8OTY,9873
-geoseeq/project.py,sha256=Ba3yvrSyPVnEM5_VGSQu6YPH3CTwE3fHs4JjAepEK7g,13880
+geoseeq/project.py,sha256=_8uttLKc6yVGDdJhPRmQOzzPeMYmUg0zBBPOAJc3yyo,14014
 geoseeq/remote_object.py,sha256=GYN6PKU7Zz3htIdpFjfZiFejzGqqJHbJyKlefM1Eixk,7151
-geoseeq/sample.py,sha256=HAfMiDPHp1UJgIA2lI6oGnNit4YKyj7nx9X07CCN98U,8316
+geoseeq/sample.py,sha256=2UmS1636bpPZbydv4PePNw-zXUs70Igt-6RTRZiCg5Q,10563
 geoseeq/search.py,sha256=gawad6Cx5FxJBPlYkXWb-UKAO-UC0_yhvyU9Ca1kaNI,3388
 geoseeq/smart_table.py,sha256=rihMsFUIn-vn4w6ukVZTHI9bjDSEr8xHExBfX8mwCHM,6169
 geoseeq/smart_tree.py,sha256=bSjDlwmOuNXutYJhytA1RovwRCHV6ZxXXJPiIGFhPaA,1825
@@ -25,7 +25,7 @@ geoseeq/cli/download.py,sha256=Znjuc9IFOcIa5_Od9mFXHJdYAJtgw9Bc_wPPcOVXn7s,21298
 geoseeq/cli/fastq_utils.py,sha256=-bmeQLaiMBm57zWOF0R5OlWTU0_3sh1JBC1RYw2BOFM,3083
 geoseeq/cli/find_grn.py,sha256=oMDxkzGQBQb2_cCuvmwoeHOsFHqyO9RLeJzrB6bAe5M,439
 geoseeq/cli/get_eula.py,sha256=79mbUwyiF7O1r0g6UTxG9kJGQEqKuH805E6eLkPC6Y4,997
-geoseeq/cli/main.py,sha256=uGCf-uREHdrDzQZDiBLFt6KcKcyDRHnN6vHZRSwZaYU,3982
+geoseeq/cli/main.py,sha256=_P_pp_ohm0Pq390FgWjNw-oQA06KGbQPAGbvgY-iL6U,4137
 geoseeq/cli/manage.py,sha256=wGXAcVaXqE5JQEU8Jh6OlHr02nB396bpS_SFcOZdrEo,5929
 geoseeq/cli/progress_bar.py,sha256=p1Xl01nkYxSBZCB30ue2verIIi22W93m3ZAMAxipD0g,738
 geoseeq/cli/project.py,sha256=V5SdXm2Hwo2lxrkpwRDedw-mAE4XnM2uwT-Gj1D90VQ,3030
@@ -52,7 +52,7 @@ geoseeq/contrib/ncbi/api.py,sha256=WQeLoGA_-Zha-QeSO8_i7HpvXyD8UkV0qc5okm11KiA,1
 geoseeq/contrib/ncbi/bioproject.py,sha256=_oThTd_iLDOC8cLOlJKAatSr362OBYZCEV3YrqodhFg,4341
 geoseeq/contrib/ncbi/cli.py,sha256=j9zEcaZPTryK3a4xluRxigcJKDhRpRxbp3KZSx-Bfhk,2400
 geoseeq/contrib/ncbi/setup_logging.py,sha256=Tp1bY1U0f-o739aHpvVYriG2qdd1lFvCYBXZeXQgt-w,175
-geoseeq/dashboard/dashboard.py,sha256=HOUJoQcFGLc3JL5UVIYETq6CkQEMP2I4WaPr2u9YV3Q,3297
+geoseeq/dashboard/dashboard.py,sha256=nradpMc6UscnekppJaRh4od2XZ_t601UX3uWrB1StK8,7736
 geoseeq/file_system/filesystem_download.py,sha256=8bcnxjWltekmCvb5N0b1guBIjLp4-CL2VtsEok-snv4,16963
 geoseeq/file_system/main.py,sha256=4HgYGq7WhlF96JlVIf16iFBTDujlBpxImmtoh4VCzDA,3627
 geoseeq/id_constructors/__init__.py,sha256=w5E0PNQ9UuAxBeZbDI7KBnUoERd85gGz3nScz45bd2o,126
@@ -92,8 +92,8 @@ geoseeq/vc/vc_cache.py,sha256=P4LXTbq2zOIv1OhP7Iw5MmypR2vXuy29Pq5K6gRvi-M,730
 geoseeq/vc/vc_dir.py,sha256=A9CLTh2wWCRzZjiLyqXD1vhtsWZGD3OjaMT5KqlfAXI,457
 geoseeq/vc/vc_sample.py,sha256=qZeioWydXvfu4rGMs20nICfNcp46y_XkND-bHdV6P5M,3850
 geoseeq/vc/vc_stub.py,sha256=IQr8dI0zsWKVAeY_5ybDD6n49_3othcgfHS3P0O9tuY,3110
-geoseeq-0.7.2.dist-info/METADATA,sha256=nBGfEYFfG9yWP6LWxczthpgwC5vZ5f7xi7VyaxVmz4Y,5107
-geoseeq-0.7.2.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-geoseeq-0.7.2.dist-info/entry_points.txt,sha256=yF-6KDM8zXib4Al0qn49TX-qM7PUkWUIcYtsgt36rjM,45
-geoseeq-0.7.2.dist-info/licenses/LICENSE,sha256=IuhIl1XCxXLPLJT_coN1CNqQU4Khlq7x4IdW7ioOJD8,1067
-geoseeq-0.7.2.dist-info/RECORD,,
+geoseeq-0.7.3.dev1.dist-info/METADATA,sha256=7cN6ntZDU2NtQYiUAB3D12fTbm_fShr46JxHwV5qF4A,5415
+geoseeq-0.7.3.dev1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+geoseeq-0.7.3.dev1.dist-info/entry_points.txt,sha256=yF-6KDM8zXib4Al0qn49TX-qM7PUkWUIcYtsgt36rjM,45
+geoseeq-0.7.3.dev1.dist-info/licenses/LICENSE,sha256=IuhIl1XCxXLPLJT_coN1CNqQU4Khlq7x4IdW7ioOJD8,1067
+geoseeq-0.7.3.dev1.dist-info/RECORD,,