geoseeq 0.6.9__py3-none-any.whl → 0.6.11__py3-none-any.whl

geoseeq/cli/main.py

@@ -54,7 +54,7 @@ def version():
     Use of this tool implies acceptance of the GeoSeeq End User License Agreement.
     Run `geoseeq eula show` to view the EULA.
     """
-    click.echo('0.6.9')  # remember to update pyproject.toml
+    click.echo('0.6.11')  # remember to update pyproject.toml
 
 
 @main.group('advanced')

geoseeq/sample.py

@@ -200,23 +200,23 @@ class Sample(RemoteObject):
         """
         url = f"data/samples/{self.uuid}/all-fastqs"
         blob = self.knex.get(url)
+        print(blob)
         files = {}
         for read_type, folders in blob.items():
             files[read_type] = {}
             for folder_name, file_grns in folders.items():
                 files[read_type][folder_name] = []
-                for file_grn in file_grns:
-                    if read_type in ["short_read::paired_end"]:
-                        files[read_type][folder_name].append(
-                            [
-                                self._grn_to_file(file_grn[0]),
-                                self._grn_to_file(file_grn[1]),
-                            ]
-                        )
-                    else:
-                        files[read_type][folder_name].append(
-                            self._grn_to_file(file_grn[0])
-                        )
+                if read_type in ["short_read::paired_end"]:
+                    files[read_type][folder_name].append(
+                        [
+                            self._grn_to_file(file_grns[0][0]),
+                            self._grn_to_file(file_grns[0][1]),
+                        ]
+                    )
+                else:
+                    files[read_type][folder_name].append(
+                        self._grn_to_file(file_grns[0])
+                    )
         return files
     
     def get_one_fasta(self):

{geoseeq-0.6.9.dist-info → geoseeq-0.6.11.dist-info}/METADATA

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.2
 Name: geoseeq
-Version: 0.6.9
+Version: 0.6.11
 Summary: GeoSeeq command line tools and python API
 Author: David C. Danko
 Author-email: "David C. Danko" <dcdanko@biotia.io>
@@ -17,6 +17,7 @@ Requires-Dist: click
 Requires-Dist: pandas
 Requires-Dist: biopython
 Requires-Dist: tqdm
+Dynamic: author
 
 # Geoseeq API Client
 

{geoseeq-0.6.9.dist-info → geoseeq-0.6.11.dist-info}/RECORD

@@ -9,7 +9,7 @@ geoseeq/organization.py,sha256=bJkYL8_D-k6IYAaii2ZbxjwYnXy6lvu6iLXscxKlA3w,2542
 geoseeq/pipeline.py,sha256=89mhWaecsKnm6tyRkdkaVp4dmZh62_v42Ze0oXf8OTY,9873
 geoseeq/project.py,sha256=kN6m1N4Tlud7saU03Sbir-oIBnXet_Cwi2OVVdaeag0,13929
 geoseeq/remote_object.py,sha256=GYN6PKU7Zz3htIdpFjfZiFejzGqqJHbJyKlefM1Eixk,7151
-geoseeq/sample.py,sha256=TNtYL8ph2pG0R5ukDC4J2AwdA0xDK9Bx7dVQmQKIMQs,8394
+geoseeq/sample.py,sha256=nlvmSy2WmiOMamkulNRloFPX7E9jVs34m1vO1PSOrHU,8336
 geoseeq/search.py,sha256=gawad6Cx5FxJBPlYkXWb-UKAO-UC0_yhvyU9Ca1kaNI,3388
 geoseeq/upload_download_manager.py,sha256=FMRqLLg77o1qFbWZc5Yc86a2pjeZrrn1rHJr1iaxKCU,8757
 geoseeq/user.py,sha256=tol8i1UGLRrbMw5jeJDnna1ikRgrCDd50Jxz0a1lSgg,690
@@ -22,7 +22,7 @@ geoseeq/cli/detail.py,sha256=q8Suu-j2k18knfSVFG-SWWGNsKM-n8y9RMA3LcIIi9Y,4132
 geoseeq/cli/download.py,sha256=W3OswqpHg1thzW6CJ7IcSS0Te2LA2WfgYISQMSl4GQg,18921
 geoseeq/cli/fastq_utils.py,sha256=-bmeQLaiMBm57zWOF0R5OlWTU0_3sh1JBC1RYw2BOFM,3083
 geoseeq/cli/get_eula.py,sha256=79mbUwyiF7O1r0g6UTxG9kJGQEqKuH805E6eLkPC6Y4,997
-geoseeq/cli/main.py,sha256=g62DQMghv2qaamlDMTL3hmdB_N6cw4Drzyh6p-nqFoY,3917
+geoseeq/cli/main.py,sha256=JceKuFnjouAPFnY4AKcfwg6MuSw5X2vVBQmbAJB0MDw,3918
 geoseeq/cli/manage.py,sha256=wGXAcVaXqE5JQEU8Jh6OlHr02nB396bpS_SFcOZdrEo,5929
 geoseeq/cli/progress_bar.py,sha256=p1Xl01nkYxSBZCB30ue2verIIi22W93m3ZAMAxipD0g,738
 geoseeq/cli/project.py,sha256=V5SdXm2Hwo2lxrkpwRDedw-mAE4XnM2uwT-Gj1D90VQ,3030
@@ -85,9 +85,9 @@ geoseeq/vc/vc_stub.py,sha256=IQr8dI0zsWKVAeY_5ybDD6n49_3othcgfHS3P0O9tuY,3110
 tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tests/test_api_client.py,sha256=TS5njc5pcPP_Ycy-ljcfPVT1hQRBsFVdQ0lCqBmoesU,12810
 tests/test_plotting.py,sha256=TcTu-2ARr8sxZJ7wPQxmbs3-gHw7uRvsgrhhhg0qKik,784
-geoseeq-0.6.9.dist-info/LICENSE,sha256=IuhIl1XCxXLPLJT_coN1CNqQU4Khlq7x4IdW7ioOJD8,1067
-geoseeq-0.6.9.dist-info/METADATA,sha256=Ir19MMLbnngifwwhkkiYm-z1jHKq4NOaTddCTU9iK7s,4915
-geoseeq-0.6.9.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
-geoseeq-0.6.9.dist-info/entry_points.txt,sha256=yF-6KDM8zXib4Al0qn49TX-qM7PUkWUIcYtsgt36rjM,45
-geoseeq-0.6.9.dist-info/top_level.txt,sha256=zZk7mmeaqAYqFJG8nq2DTgSQPbflRjJwkDIhNURPDEU,14
-geoseeq-0.6.9.dist-info/RECORD,,
+geoseeq-0.6.11.dist-info/LICENSE,sha256=IuhIl1XCxXLPLJT_coN1CNqQU4Khlq7x4IdW7ioOJD8,1067
+geoseeq-0.6.11.dist-info/METADATA,sha256=2KHgmI19d8X39YqPd5R_t8H3-hEWV5yTwesrsrxJ4CY,4932
+geoseeq-0.6.11.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
+geoseeq-0.6.11.dist-info/entry_points.txt,sha256=yF-6KDM8zXib4Al0qn49TX-qM7PUkWUIcYtsgt36rjM,45
+geoseeq-0.6.11.dist-info/top_level.txt,sha256=zZk7mmeaqAYqFJG8nq2DTgSQPbflRjJwkDIhNURPDEU,14
+geoseeq-0.6.11.dist-info/RECORD,,

{geoseeq-0.6.9.dist-info → geoseeq-0.6.11.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (75.6.0)
+Generator: setuptools (75.8.0)
 Root-Is-Purelib: true
 Tag: py3-none-any