gentroutils 3.0.0__py3-none-any.whl → 3.1.0__py3-none-any.whl

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Files changed (5) hide show
  1. {gentroutils-3.0.0.dist-info → gentroutils-3.1.0.dist-info}/METADATA +11 -7
  2. {gentroutils-3.0.0.dist-info → gentroutils-3.1.0.dist-info}/RECORD +5 -5
  3. {gentroutils-3.0.0.dist-info → gentroutils-3.1.0.dist-info}/WHEEL +0 -0
  4. {gentroutils-3.0.0.dist-info → gentroutils-3.1.0.dist-info}/entry_points.txt +0 -0
  5. {gentroutils-3.0.0.dist-info → gentroutils-3.1.0.dist-info}/licenses/LICENSE +0 -0
{gentroutils-3.0.0.dist-info → gentroutils-3.1.0.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: gentroutils
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- Version: 3.0.0
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+ Version: 3.1.0
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  Summary: Open Targets python genetics utility CLI tools
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  Author-email: Szymon Szyszkowski <ss60@sanger.ac.uk>
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  License-Expression: Apache-2.0
@@ -19,7 +19,7 @@ Requires-Dist: gcsfs>=2025.7.0
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  Requires-Dist: google-cloud-storage>=3.1.1
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  Requires-Dist: loguru>=0.7.3
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  Requires-Dist: opentargets-otter>=25.0.2
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- Requires-Dist: polars[fsspec,gcs]>=1.31.0
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+ Requires-Dist: polars[fsspec]>=1.31.0
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  Requires-Dist: pydantic>=2.10.6
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  Requires-Dist: tqdm>=4.67.1
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  Description-Content-Type: text/markdown
@@ -34,7 +34,7 @@ Set of Command Line Interface tools to process Open Targets Genetics GWAS data.
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  ## Installation
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- ```
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+ ```{bash}
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  pip install gentroutils
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  ```
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@@ -121,7 +121,8 @@ The list of tasks (defined in the `config.yaml` file) that can be run are:
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  This task fetches the latest GWAS Catalog release metadata from the `https://www.ebi.ac.uk/gwas/api/search/stats` endpoint and saves it to the specified destination.
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- > [!NOTE] > **Task parameters**
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+ > [!NOTE]
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+ > **Task parameters**
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  >
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  > - The `stats_uri` is used to fetch the latest release date and other metadata.
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  > - The `destination_template` is where the metadata will be saved, and it uses the `{release_date}` placeholder to specify the release date dynamically. By default it searches for the release directly in the stats_uri json output.
@@ -141,7 +142,8 @@ This task fetches the latest GWAS Catalog release metadata from the `https://www
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  This task fetches the GWAS Catalog associations file from the specified FTP server and saves it to the specified destination.
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- > [!NOTE] > **Task parameters**
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+ > [!NOTE]
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+ > **Task parameters**
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  >
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  > - The `stats_uri` is used to fetch the latest release date and other metadata.
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  > - The `source_template` is the URL of the GWAS Catalog associations file, which uses the `{release_date}` placeholder to specify the release date dynamically. The release date is fetched from the `stats_uri` endpoint.
@@ -162,7 +164,8 @@ This task fetches the GWAS Catalog associations file from the specified FTP serv
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  This task fetches the GWAS Catalog studies file from the specified FTP server and saves it to the specified destination.
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- > [!NOTE] > **Task parameters**
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+ > [!NOTE]
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+ > **Task parameters**
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  >
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  > - The `stats_uri` is used to fetch the latest release date and other metadata.
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  > - The `source_template` is the URL of the GWAS Catalog studies file, which uses the `{release_date}` placeholder to specify the release date dynamically. The release date is fetched from the `stats_uri` endpoint.
@@ -183,7 +186,8 @@ This task fetches the GWAS Catalog studies file from the specified FTP server an
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  This task fetches the GWAS Catalog ancestries file from the specified FTP server and saves it to the specified destination.
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- > [!NOTE] > **Task parameters**
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+ > [!NOTE]
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+ > **Task parameters**
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  >
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  > - The `stats_uri` is used to fetch the latest release date and other metadata.
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  > - The `source_template` is the URL of the GWAS Catalog ancestries file, which uses the `{release_date}` placeholder to specify the release date dynamically. The release date is fetched from the `stats_uri` endpoint.
{gentroutils-3.0.0.dist-info → gentroutils-3.1.0.dist-info}/RECORD RENAMED
@@ -15,8 +15,8 @@ gentroutils/tasks/__init__.py,sha256=WvMdT_m0F1Kos-FWaVlXLTCuRs-xQD1cRHtHEIZ_U4c
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  gentroutils/tasks/crawl.py,sha256=kHLT5EBFUT6yubNKPshHKNrlDMuQ7RM9c22g44VN734,6766
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  gentroutils/tasks/curation.py,sha256=qBI0PF6Bby-J-113VM2xgW4a7dq8L99rRq8YMo6dDww,4675
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  gentroutils/tasks/fetch.py,sha256=cDP6FCzSCIRq_MZGXZEVQtcLOG6TsOzIg6z_s2U6dkM,6289
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- gentroutils-3.0.0.dist-info/METADATA,sha256=-h_nxtgCIubVMGMvzYr0A9_zxmS8JCQ7TCNA2tmHMws,15268
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- gentroutils-3.0.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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- gentroutils-3.0.0.dist-info/entry_points.txt,sha256=KjODdAGrWKebI3ogqs9r6snAJ_DtLGpm1jREbZ6OXGs,49
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- gentroutils-3.0.0.dist-info/licenses/LICENSE,sha256=8rMKYP7K5vL-KA2WmdBkUBz4iFRveUOWUMAFP8uc3P0,10945
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- gentroutils-3.0.0.dist-info/RECORD,,
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+ gentroutils-3.1.0.dist-info/METADATA,sha256=8ERSzEvSQV7HsySDmB6wLc6Qm7IUvVmHnV-OnzwXYjg,15272
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+ gentroutils-3.1.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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+ gentroutils-3.1.0.dist-info/entry_points.txt,sha256=KjODdAGrWKebI3ogqs9r6snAJ_DtLGpm1jREbZ6OXGs,49
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+ gentroutils-3.1.0.dist-info/licenses/LICENSE,sha256=8rMKYP7K5vL-KA2WmdBkUBz4iFRveUOWUMAFP8uc3P0,10945
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+ gentroutils-3.1.0.dist-info/RECORD,,