genhpf 1.0.5__py3-none-any.whl → 1.0.6__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Potentially problematic release.
This version of genhpf might be problematic. Click here for more details.
- genhpf/scripts/test.py +3 -0
- {genhpf-1.0.5.dist-info → genhpf-1.0.6.dist-info}/METADATA +1 -1
- {genhpf-1.0.5.dist-info → genhpf-1.0.6.dist-info}/RECORD +7 -7
- {genhpf-1.0.5.dist-info → genhpf-1.0.6.dist-info}/LICENSE +0 -0
- {genhpf-1.0.5.dist-info → genhpf-1.0.6.dist-info}/WHEEL +0 -0
- {genhpf-1.0.5.dist-info → genhpf-1.0.6.dist-info}/entry_points.txt +0 -0
- {genhpf-1.0.5.dist-info → genhpf-1.0.6.dist-info}/top_level.txt +0 -0
genhpf/scripts/test.py
CHANGED
|
@@ -208,6 +208,9 @@ def main(cfg: Config) -> None:
|
|
|
208
208
|
meds_pred_output = meds_pred_output.with_columns(
|
|
209
209
|
pl.col("subject_id").map_elements(lambda x: x.split("_")[0], return_dtype=pl.String).cast(int)
|
|
210
210
|
)
|
|
211
|
+
meds_pred_output = (
|
|
212
|
+
meds_pred_output.with_columns(pl.col("predicted_boolean_value").cast(bool))
|
|
213
|
+
)
|
|
211
214
|
if not os.path.exists(cfg.meds.output_dir):
|
|
212
215
|
os.makedirs(cfg.meds.output_dir)
|
|
213
216
|
meds_pred_output.write_parquet(os.path.join(cfg.meds.output_dir, f"{subset}.parquet"))
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.2
|
|
2
2
|
Name: genhpf
|
|
3
|
-
Version: 1.0.
|
|
3
|
+
Version: 1.0.6
|
|
4
4
|
Summary: GenHPF: General Healthcare Predictive Framework with Multi-task Multi-source Learning
|
|
5
5
|
Author-email: Jungwoo Oh <ojw0123@kaist.ac.kr>, Kyunghoon Hur <pacesun@kaist.ac.kr>
|
|
6
6
|
License: MIT license
|
|
@@ -36,7 +36,7 @@ genhpf/modules/identity_layer.py,sha256=uGRqfRBNhc-ha5wNrqawh5E1pw5Lm9GDGi1stju-
|
|
|
36
36
|
genhpf/modules/layer_norm.py,sha256=-aVKThi1pWvVMbMAzyQG1co6MHPBCUZgxWJKYzIqsPQ,902
|
|
37
37
|
genhpf/modules/positional_encoding.py,sha256=Rf_qHdQArljEggRO4EHufc_JHq9-i44Oog1w9Bh51DQ,754
|
|
38
38
|
genhpf/scripts/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
39
|
-
genhpf/scripts/test.py,sha256=
|
|
39
|
+
genhpf/scripts/test.py,sha256=DZPiZa-Tm6kKLcK3R1EH82gjq4Hbl098IAY4kA3fQxg,10288
|
|
40
40
|
genhpf/scripts/train.py,sha256=V4abCZ0r6qWxeJZdXyk4uXSVFXscqH_dhzk7CZuWrBA,12872
|
|
41
41
|
genhpf/scripts/preprocess/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
42
42
|
genhpf/scripts/preprocess/manifest.py,sha256=ZIK16e4vs_cS2K_tM1GaT38hc1nBHk6JB9Uga6OjgU4,2711
|
|
@@ -59,9 +59,9 @@ genhpf/utils/distributed_utils.py,sha256=000xKlw8SLoSH16o6n2bB3eueGR0aVD_DufPYES
|
|
|
59
59
|
genhpf/utils/file_io.py,sha256=hnZXdMtAibfFDoIfn-SDusl-v7ZImeUEh0eD2MIxbG4,4919
|
|
60
60
|
genhpf/utils/pdb.py,sha256=400rk1pVfOpVpzKIFHnTRlZ2VCtBqRh9G-pRRwu2Oqo,930
|
|
61
61
|
genhpf/utils/utils.py,sha256=BoC_7Gz8uCHbUBCpcXGBMD-5irApi_6xM7nU-2ac4aA,6176
|
|
62
|
-
genhpf-1.0.
|
|
63
|
-
genhpf-1.0.
|
|
64
|
-
genhpf-1.0.
|
|
65
|
-
genhpf-1.0.
|
|
66
|
-
genhpf-1.0.
|
|
67
|
-
genhpf-1.0.
|
|
62
|
+
genhpf-1.0.6.dist-info/LICENSE,sha256=VK_rvhY2Xi_DAIZHtauni5O9-1_do5SNWjrskv4amg8,1065
|
|
63
|
+
genhpf-1.0.6.dist-info/METADATA,sha256=jNN97lqcfOLt3fbpmwd643IcTT-PlVof7IlkCur9zQs,10589
|
|
64
|
+
genhpf-1.0.6.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
|
|
65
|
+
genhpf-1.0.6.dist-info/entry_points.txt,sha256=Wp94VV2w9KasBDLaluLM5EnjLgjNOAQVu44wKRDAwmQ,288
|
|
66
|
+
genhpf-1.0.6.dist-info/top_level.txt,sha256=lk846Vmnvydb6UZn8xmowj60nkrZYexNOGGnPM-IbhA,7
|
|
67
|
+
genhpf-1.0.6.dist-info/RECORD,,
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|