geney 1.4.32__py2.py3-none-any.whl → 1.4.34__py2.py3-none-any.whl

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Files changed (6) hide show
  1. geney/utils/SeqMats.py +1 -1
  2. geney/utils/splicing_utils.py +1 -0
  3. {geney-1.4.32.dist-info → geney-1.4.34.dist-info}/METADATA +1 -1
  4. {geney-1.4.32.dist-info → geney-1.4.34.dist-info}/RECORD +6 -6
  5. {geney-1.4.32.dist-info → geney-1.4.34.dist-info}/WHEEL +0 -0
  6. {geney-1.4.32.dist-info → geney-1.4.34.dist-info}/top_level.txt +0 -0
geney/utils/SeqMats.py CHANGED
@@ -438,7 +438,7 @@ class SeqMat:
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  # Run the splicing prediction engine (function assumed to be defined externally)
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  from .splicing_utils import run_splicing_engine
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- donor_probs, acceptor_probs = run_splicing_engine(seq=seq, splicing_engine=engine)
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+ donor_probs, acceptor_probs = run_splicing_engine(seq=seq, engine=engine)
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  # Trim off the fixed flanks before returning results.
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  seq = seq[5000:-5000]
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  indices = indices[5000:-5000]
geney/utils/splicing_utils.py CHANGED
@@ -30,6 +30,7 @@ def run_splicing_engine(seq: Optional[str] = None, engine: str = 'spliceai') ->
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  case 'spliceai-pytorch':
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  from geney.utils.spliceai_pytorch_utils import sai_predict_probs, model
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  acceptor_probs, donor_probs = sai_predict_probs(seq, model=model)
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+ print(len(acceptor_probs), len(donor_probs), donor_probs)
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  case 'pangolin':
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  from geney.utils.pangolin_utils import pangolin_predict_probs, pang_models
{geney-1.4.32.dist-info → geney-1.4.34.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.4.32
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+ Version: 1.4.34
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.4.32.dist-info → geney-1.4.34.dist-info}/RECORD RENAMED
@@ -37,7 +37,7 @@ geney/translation_initiation/tis_utils.py,sha256=AF3siFjuQH-Rs44EV-80zHdbxRMvN4w
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  geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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  geney/utils/Fasta_segment.py,sha256=weB5NJ65P0XiyAJCiCHx4T9sHC1pWLpuQeOy0B85gyg,11364
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- geney/utils/SeqMats.py,sha256=-eoSKJFZR5OelhjXVkTIJbqYgp2xoWvgo8KWfKIBkRk,18197
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+ geney/utils/SeqMats.py,sha256=RowgiQjP_PF1wl9EZFK_L8wJ4eODlg7UdK9SHFp14XY,18188
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  geney/utils/SeqMatsOld.py,sha256=syRU5DAuTh3xUfGW_qP9wlcBO5pHsG_y5PlrfXTIxUY,18502
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  geney/utils/TranscriptLibrary.py,sha256=W1hv4Y8wRlmwTs3iFdn4_IqS-2suVDzZe4fwti2KbR4,2076
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  geney/utils/__init__.py,sha256=-nJ-DMx1JzP-ZCe_QuQCeM0ZYIT_16jxoXDhUaO_4Oc,714
@@ -45,9 +45,9 @@ geney/utils/mutation_utils.py,sha256=r-pHr56gEa5kh_DPX8MjFY3ZfYaOtyo4CUfJ5ZHlXPw
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  geney/utils/pangolin_utils.py,sha256=JQSPbWxdzqGFYfWQktkfLMaMSGR28eGQhNzO7MLMe5M,6162
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  geney/utils/spliceai_pytorch_utils.py,sha256=wwBoT2utKZjjaWAUo11mSoympVK1vkNxAxcJvXAh8SM,2792
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  geney/utils/spliceai_utils.py,sha256=VtrIbjyQxk_3lw86eWjftRYyal9OzxArJ0GV5u_ymTg,2721
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- geney/utils/splicing_utils.py,sha256=Z0Z645fJhFnszpIueeMNaa-NMRLFFyJoRBR_yFbzrN0,20965
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+ geney/utils/splicing_utils.py,sha256=LKfozj7GYLYbGKwhZmh3A8Vc830TH2bDNGZX0kz6Fqs,21035
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  geney/utils/utils.py,sha256=GXqlatNhix1akt3fburNzIwhiW9ZdCQSt2vmU80neyA,2370
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- geney-1.4.32.dist-info/METADATA,sha256=SLfl8T6fgOlpb2Plf1iJxcaD-IXjclU4ZFcD3SWZTbM,990
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- geney-1.4.32.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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- geney-1.4.32.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.4.32.dist-info/RECORD,,
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+ geney-1.4.34.dist-info/METADATA,sha256=xDiZZ7s1Yn16NtaOxv1X3B-3Y63ALpvclp5Sn51t97I,990
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+ geney-1.4.34.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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+ geney-1.4.34.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.4.34.dist-info/RECORD,,
{geney-1.4.32.dist-info → geney-1.4.34.dist-info}/WHEEL RENAMED
File without changes