geney 1.4.26__py2.py3-none-any.whl → 1.4.27__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/pipelines.py +3 -1
  2. {geney-1.4.26.dist-info → geney-1.4.27.dist-info}/METADATA +1 -1
  3. {geney-1.4.26.dist-info → geney-1.4.27.dist-info}/RECORD +5 -5
  4. {geney-1.4.26.dist-info → geney-1.4.27.dist-info}/WHEEL +0 -0
  5. {geney-1.4.26.dist-info → geney-1.4.27.dist-info}/top_level.txt +0 -0
geney/pipelines.py CHANGED
@@ -40,7 +40,9 @@ def oncosplice_pipeline_single_transcript(mut_id, transcript_id=None, splicing_e
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  report = []
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  for variant_transcript, isoform_metadata in ss.get_viable_transcripts(metadata=True):
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  onco = Oncosplice(reference_transcript.protein, variant_transcript.protein, reference_transcript.cons_vector)
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- report.append(pd.concat([base_report, ss_metadata, isoform_metadata, onco.get_analysis_series()]))
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+ report.append(pd.concat([base_report, ss_metadata, isoform_metadata,
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+ pd.Series({'reference_mrna': reference_transcript.mature_mrna.seq, 'variant_mrna': variant_transcript.mature_mrna.seq}),
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+ onco.get_analysis_series()]))
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  return pd.DataFrame(report)
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{geney-1.4.26.dist-info → geney-1.4.27.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.4.26
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+ Version: 1.4.27
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.4.26.dist-info → geney-1.4.27.dist-info}/RECORD RENAMED
@@ -23,7 +23,7 @@ geney/gtex_utils.py,sha256=asL2lHyU5KsbWpV096vkf1Ka7hSo_RRfZqw7p5nERmE,1919
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  geney/immune_utils.py,sha256=b-8dRcCti7xsU7RG3op18lkSnAD8dp_BymGaR-hbNcI,5272
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  geney/mutation_utils.py,sha256=C_kv2MB_L8LlhX3W2ooXjJ3uDoJ8zX1WeDtZKoBZJkI,1547
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  geney/pangolin_utils.py,sha256=9jdBXlOcRaUdfi-UpUxHA0AkTMZkUF-Lt7HVZ1nEm3s,2973
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- geney/pipelines.py,sha256=XeC4NTqxzHzrGX6HIBXe8pe4pELpjYLgTmcOt7ESN0g,2916
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+ geney/pipelines.py,sha256=p_zZjQRkcQ_MwOZWv247QVG5iNSrrV4g8BT3vJNwpZM,3103
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  geney/power_utils.py,sha256=orOhsr9vkQ-Y4nD1zHj_MmR2J3uYiUsiklqVy-5T-2M,7331
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  geney/seqmat_utils.py,sha256=wzb3PX5it5bpIFQvcxyzlxfhoJTbHHbsjg0rzh05iVs,19753
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  geney/spliceai_utils.py,sha256=nyBnLdYs1rB-duA9lfJYM9Q2xNlvZA3I_sCJ1z5WjFw,3294
@@ -46,7 +46,7 @@ geney/utils/pangolin_utils.py,sha256=JQSPbWxdzqGFYfWQktkfLMaMSGR28eGQhNzO7MLMe5M
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  geney/utils/spliceai_utils.py,sha256=VtrIbjyQxk_3lw86eWjftRYyal9OzxArJ0GV5u_ymTg,2721
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  geney/utils/splicing_utils.py,sha256=vPCGnCPR1ooEZEHR79yFHLmRQXEJHXEQjjxpBR-YWOs,20635
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  geney/utils/utils.py,sha256=m51Vd0cEbrcIHo6_8BAuI9YSPcKRs22e5LfVd2Qj6Is,2181
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- geney-1.4.26.dist-info/METADATA,sha256=83NRlxbFuF6f3VZ4BJOqochC7Nre1zJZY1zAv4P6hFo,990
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- geney-1.4.26.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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- geney-1.4.26.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.4.26.dist-info/RECORD,,
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+ geney-1.4.27.dist-info/METADATA,sha256=m4-HDmqjW43J6QhNdel4Luy18FvL4FXAHw-zE1hPDcQ,990
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+ geney-1.4.27.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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+ geney-1.4.27.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.4.27.dist-info/RECORD,,
{geney-1.4.26.dist-info → geney-1.4.27.dist-info}/WHEEL RENAMED
File without changes