geney 1.4.25__py2.py3-none-any.whl → 1.4.26__py2.py3-none-any.whl

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Files changed (6) hide show
  1. geney/utils/SeqMats.py +1 -1
  2. geney/utils/TranscriptLibrary.py +2 -2
  3. {geney-1.4.25.dist-info → geney-1.4.26.dist-info}/METADATA +1 -1
  4. {geney-1.4.25.dist-info → geney-1.4.26.dist-info}/RECORD +6 -6
  5. {geney-1.4.25.dist-info → geney-1.4.26.dist-info}/WHEEL +0 -0
  6. {geney-1.4.25.dist-info → geney-1.4.26.dist-info}/top_level.txt +0 -0
geney/utils/SeqMats.py CHANGED
@@ -165,7 +165,7 @@ class SeqMat:
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  # only_snps: bool = False
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  # ) -> SeqMat:
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- def apply_mutation(
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+ def apply_mutations(
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  self,
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  mutations: Union[Tuple[float, str, str], List[Tuple[float, str, str]]] = None,
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  *,
geney/utils/TranscriptLibrary.py CHANGED
@@ -11,10 +11,10 @@ class TranscriptLibrary:
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  # Apply all mutations to 'event'
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  for i, (pos, ref, alt) in enumerate(mutations):
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- self.event.pre_mrna.apply_mutation(pos, ref, alt)
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+ self.event.pre_mrna.apply_mutations((pos, ref, alt))
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  if len(mutations) > 1:
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  t = reference_transcript.clone()
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- t.pre_mrna.apply_mutation(pos, ref, alt)
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+ t.pre_mrna.apply_mutations((pos, ref, alt))
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  self._transcripts[f'mut{i+1}'] = t
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  setattr(self, f'mut{i+1}', t)
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{geney-1.4.25.dist-info → geney-1.4.26.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.4.25
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+ Version: 1.4.26
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.4.25.dist-info → geney-1.4.26.dist-info}/RECORD RENAMED
@@ -37,16 +37,16 @@ geney/translation_initiation/tis_utils.py,sha256=AF3siFjuQH-Rs44EV-80zHdbxRMvN4w
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  geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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  geney/utils/Fasta_segment.py,sha256=weB5NJ65P0XiyAJCiCHx4T9sHC1pWLpuQeOy0B85gyg,11364
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- geney/utils/SeqMats.py,sha256=zymeGYvpuJOBlEBx6vrbh9b6y9t4egCmKnerrxxKU8s,17615
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+ geney/utils/SeqMats.py,sha256=PaUp6PMKYDYZ8RTodmKAmCa9ywHnkqSEqTjPoATr82k,17616
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  geney/utils/SeqMatsOld.py,sha256=syRU5DAuTh3xUfGW_qP9wlcBO5pHsG_y5PlrfXTIxUY,18502
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- geney/utils/TranscriptLibrary.py,sha256=ma_ZVPgglxXDDneEvdqxxeqxG8eSFL-zgLUXyC6BqY8,2070
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+ geney/utils/TranscriptLibrary.py,sha256=W1hv4Y8wRlmwTs3iFdn4_IqS-2suVDzZe4fwti2KbR4,2076
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  geney/utils/__init__.py,sha256=-nJ-DMx1JzP-ZCe_QuQCeM0ZYIT_16jxoXDhUaO_4Oc,714
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  geney/utils/mutation_utils.py,sha256=r-pHr56gEa5kh_DPX8MjFY3ZfYaOtyo4CUfJ5ZHlXPw,3243
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  geney/utils/pangolin_utils.py,sha256=JQSPbWxdzqGFYfWQktkfLMaMSGR28eGQhNzO7MLMe5M,6162
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  geney/utils/spliceai_utils.py,sha256=VtrIbjyQxk_3lw86eWjftRYyal9OzxArJ0GV5u_ymTg,2721
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  geney/utils/splicing_utils.py,sha256=vPCGnCPR1ooEZEHR79yFHLmRQXEJHXEQjjxpBR-YWOs,20635
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  geney/utils/utils.py,sha256=m51Vd0cEbrcIHo6_8BAuI9YSPcKRs22e5LfVd2Qj6Is,2181
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- geney-1.4.25.dist-info/METADATA,sha256=iZ5UDkA4ibY03jtqec5n4grbfchBJxsf2Qpnw7KZW5c,990
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- geney-1.4.25.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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- geney-1.4.25.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.4.25.dist-info/RECORD,,
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+ geney-1.4.26.dist-info/METADATA,sha256=83NRlxbFuF6f3VZ4BJOqochC7Nre1zJZY1zAv4P6hFo,990
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+ geney-1.4.26.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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+ geney-1.4.26.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.4.26.dist-info/RECORD,,
{geney-1.4.25.dist-info → geney-1.4.26.dist-info}/WHEEL RENAMED
File without changes