geney 1.4.1__py2.py3-none-any.whl → 1.4.2__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/SpliceSimulator.py +11 -1
  2. {geney-1.4.1.dist-info → geney-1.4.2.dist-info}/METADATA +1 -1
  3. {geney-1.4.1.dist-info → geney-1.4.2.dist-info}/RECORD +5 -5
  4. {geney-1.4.1.dist-info → geney-1.4.2.dist-info}/WHEEL +0 -0
  5. {geney-1.4.1.dist-info → geney-1.4.2.dist-info}/top_level.txt +0 -0
geney/SpliceSimulator.py CHANGED
@@ -115,10 +115,20 @@ class SpliceSimulator:
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  pd.Series: A series with keys 'donor' and 'acceptor' containing the maximum differences.
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  """
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+ # max_missplicing = {}
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+ # for site_type in ['donors', 'acceptors']:
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+ # df = self.full_df[site_type]
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+ # max_missplicing[site_type] = max(abs(df[event] - df['ref_prob']))
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+ # return pd.Series(max_missplicing)
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  max_missplicing = {}
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  for site_type in ['donors', 'acceptors']:
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  df = self.full_df[site_type]
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- max_missplicing[site_type] = max(abs(df[event] - df['ref_prob']))
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+ # compute the signed difference
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+ diff = df[event] - df['ref_prob']
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+ # find the index of the max abs value
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+ idx = diff.abs().idxmax()
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+ # store the signed value at that index
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+ max_missplicing[site_type] = diff.loc[idx]
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  return pd.Series(max_missplicing)
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  def set_donor_nodes(self) -> None:
{geney-1.4.1.dist-info → geney-1.4.2.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.4.1
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+ Version: 1.4.2
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.4.1.dist-info → geney-1.4.2.dist-info}/RECORD RENAMED
@@ -2,7 +2,7 @@ geney/Fasta_segment.py,sha256=99HxNGNh_MfdVW6hhtlb1vOn7eSmT7oFoEfHDFMxG8w,11275
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  geney/Gene.py,sha256=G-5ROebtvbVazzPlsBJ1r2DEduCwsIA5S8_TmBuoyjw,7030
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  geney/Oncosplice.py,sha256=ETAvMl_Oq6mEJQHPNwdDO5csX6Ahuped_om10KifCyM,17739
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  geney/SeqMats.py,sha256=9-eJnfU2w3LGc0XvVvFEO_QrBneTkC6xkZKDfTcEw5o,19282
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- geney/SpliceSimulator.py,sha256=eVXEpczq3fqQpfmgn-xCnJdCiNYG9TwW3LkSPdyeFpI,18376
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+ geney/SpliceSimulator.py,sha256=oOLfApT5lFGsGDT-yY2aLPFOuwxYHmLJgq3opCulsn8,18832
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  geney/Transcript.py,sha256=Wu0UiubFOdasfPCpe9uGfhPDG4MNks5LzUqGzo85ong,14458
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  geney/__init__.py,sha256=YLWXJS53yeryp6nVhCgFg3_Du9Guj9y3iSrdfx61q5Y,3017
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  geney/_config_setup.py,sha256=nblcGU3HIt8YjdrAoGfbEVKRxwJKv0PikJ5-7AL6axQ,723
@@ -45,7 +45,7 @@ geney/utils/pangolin_utils.py,sha256=EUadXPxY7QUnsQrlyO7K5cg9mi5ssZjSDvNa_SzoBQg
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  geney/utils/spliceai_utils.py,sha256=oRrGJqjWirzYmiBmUR9hGr4B7V_7Y1uMyRTmbFKc_t0,4539
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  geney/utils/splicing_utils.py,sha256=_Df3SakZrDjs2yKLG05TtfwuoXDLLrZWc9Y8i79rFDM,20633
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  geney/utils/utils.py,sha256=m51Vd0cEbrcIHo6_8BAuI9YSPcKRs22e5LfVd2Qj6Is,2181
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- geney-1.4.1.dist-info/METADATA,sha256=HyC14VKqeu1HExC-vasEc4yhH73fN1hI_L5fAE1UXgo,989
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- geney-1.4.1.dist-info/WHEEL,sha256=Kh9pAotZVRFj97E15yTA4iADqXdQfIVTHcNaZTjxeGM,110
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- geney-1.4.1.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.4.1.dist-info/RECORD,,
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+ geney-1.4.2.dist-info/METADATA,sha256=BJlGqmWdiofdGSCLKU7Cpz0nRaqukqLZsEZKc70yk7k,989
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+ geney-1.4.2.dist-info/WHEEL,sha256=Kh9pAotZVRFj97E15yTA4iADqXdQfIVTHcNaZTjxeGM,110
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+ geney-1.4.2.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.4.2.dist-info/RECORD,,
{geney-1.4.1.dist-info → geney-1.4.2.dist-info}/WHEEL RENAMED
File without changes