geney 1.3.72__py2.py3-none-any.whl → 1.3.73__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/splicing_utils.py +6 -1
  2. {geney-1.3.72.dist-info → geney-1.3.73.dist-info}/METADATA +1 -1
  3. {geney-1.3.72.dist-info → geney-1.3.73.dist-info}/RECORD +5 -5
  4. {geney-1.3.72.dist-info → geney-1.3.73.dist-info}/WHEEL +0 -0
  5. {geney-1.3.72.dist-info → geney-1.3.73.dist-info}/top_level.txt +0 -0
geney/splicing_utils.py CHANGED
@@ -540,7 +540,12 @@ def process_pairwise_epistasis_explicit(mid, engine='spliceai'):
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  lower_pos, upper_pos = int(parts[2]), int(parts[6])
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  # Load gene and its transcript (as pre-mRNA)
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- g = Gene.from_file(parts[0]).transcript().generate_pre_mrna()
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+ g = Gene.from_file(parts[0]).transcript()
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+
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+ if g is not None:
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+ g.generate_pre_mrna()
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+ else:
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+ return pd.DataFrame()
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  # If gene is on the reverse strand, swap positions and set factor to -1.
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  if g.rev:
{geney-1.3.72.dist-info → geney-1.3.73.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.3.72
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+ Version: 1.3.73
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.3.72.dist-info → geney-1.3.73.dist-info}/RECORD RENAMED
@@ -16,7 +16,7 @@ geney/pangolin_utils.py,sha256=9jdBXlOcRaUdfi-UpUxHA0AkTMZkUF-Lt7HVZ1nEm3s,2973
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  geney/power_utils.py,sha256=MehZFUdkJ2EFUot709yPEDxSkXmH5XevMebX2HD768A,7330
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  geney/seqmat_utils.py,sha256=wzb3PX5it5bpIFQvcxyzlxfhoJTbHHbsjg0rzh05iVs,19753
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  geney/spliceai_utils.py,sha256=tVY0T6F6l3fNoaktpn7Kq0oH5ZM0ThFYt9nPi_lfakw,3077
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- geney/splicing_utils.py,sha256=Xeji_AMEyB5Yb21E-qWoAFYHFHgZhVXZ6Xt2t1wuhsg,47240
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+ geney/splicing_utils.py,sha256=mAiZXBzb0IzZ_O0CIhxR36q8H9xqPXJOUk2fU1UTqc8,47313
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  geney/survival_utils.py,sha256=KnAzEviMuXh6SnVXId9PgsFLSbgkduTvYoIthxN7FPA,6886
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  geney/tcga_utils.py,sha256=D_BNHm-D_K408dlcJm3hzH2c6QNFjQsKvUcOPiQRk7g,17612
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  geney/tis_utils.py,sha256=la0CZroaKe5RgAyFd4Bf_DqQncklWgAY2823xVst98o,7813
@@ -25,7 +25,7 @@ geney/translation_initiation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
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  geney/translation_initiation/tis_utils.py,sha256=AF3siFjuQH-Rs44EV-80zHdbxRMvN4woLFSHroWIETc,4448
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  geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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- geney-1.3.72.dist-info/METADATA,sha256=NgbWgh5UPWkP2EgvbJ2nASR2pbmb_lvehLtakhv4-eQ,990
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- geney-1.3.72.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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- geney-1.3.72.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.3.72.dist-info/RECORD,,
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+ geney-1.3.73.dist-info/METADATA,sha256=zBDPXEkIQIf58meB91wGEvGGPfe1rlR7-XZX9toMKdM,990
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+ geney-1.3.73.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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+ geney-1.3.73.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.3.73.dist-info/RECORD,,
{geney-1.3.72.dist-info → geney-1.3.73.dist-info}/WHEEL RENAMED
File without changes