geney 1.3.70__py2.py3-none-any.whl → 1.3.71__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/splicing_utils.py +3 -3
  2. {geney-1.3.70.dist-info → geney-1.3.71.dist-info}/METADATA +1 -1
  3. {geney-1.3.70.dist-info → geney-1.3.71.dist-info}/RECORD +5 -5
  4. {geney-1.3.70.dist-info → geney-1.3.71.dist-info}/WHEEL +0 -0
  5. {geney-1.3.70.dist-info → geney-1.3.71.dist-info}/top_level.txt +0 -0
geney/splicing_utils.py CHANGED
@@ -656,9 +656,9 @@ def process_pairwise_epistasis_explicit(mid, engine='spliceai'):
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  #
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  # df.loc['antagonistic'] = 0
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  # df.loc['antagonistic', mask] = 1
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- # df.loc['mut_id'] = mid
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- # df.loc['engine'] = engine
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- # df.loc['site'] = df.columns
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+ df.loc['mut_id'] = mid
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+ df.loc['engine'] = engine
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+ df.loc['site'] = df.columns
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  df = df.rename({mid: 'epistasis', mid.split('|')[0]: 'cv1', mid.split('|')[1]: 'cv2'})
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  df = df.T
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  return df
{geney-1.3.70.dist-info → geney-1.3.71.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.3.70
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+ Version: 1.3.71
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.3.70.dist-info → geney-1.3.71.dist-info}/RECORD RENAMED
@@ -16,7 +16,7 @@ geney/pangolin_utils.py,sha256=9jdBXlOcRaUdfi-UpUxHA0AkTMZkUF-Lt7HVZ1nEm3s,2973
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  geney/power_utils.py,sha256=MehZFUdkJ2EFUot709yPEDxSkXmH5XevMebX2HD768A,7330
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  geney/seqmat_utils.py,sha256=wzb3PX5it5bpIFQvcxyzlxfhoJTbHHbsjg0rzh05iVs,19753
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  geney/spliceai_utils.py,sha256=tVY0T6F6l3fNoaktpn7Kq0oH5ZM0ThFYt9nPi_lfakw,3077
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- geney/splicing_utils.py,sha256=JKQvm-4uJesSIe6_i6UAwhZfojJFGhXv5ZxvrwWy_54,47792
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+ geney/splicing_utils.py,sha256=-4Xd7durnm3362IYn_7RO7dOZkPRadWZcRZgvTF2Thg,47786
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  geney/survival_utils.py,sha256=KnAzEviMuXh6SnVXId9PgsFLSbgkduTvYoIthxN7FPA,6886
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  geney/tcga_utils.py,sha256=D_BNHm-D_K408dlcJm3hzH2c6QNFjQsKvUcOPiQRk7g,17612
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  geney/tis_utils.py,sha256=la0CZroaKe5RgAyFd4Bf_DqQncklWgAY2823xVst98o,7813
@@ -25,7 +25,7 @@ geney/translation_initiation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
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  geney/translation_initiation/tis_utils.py,sha256=AF3siFjuQH-Rs44EV-80zHdbxRMvN4woLFSHroWIETc,4448
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  geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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- geney-1.3.70.dist-info/METADATA,sha256=4n6FWqVc4DONBOKNmhWZ5RMCik7GMPz8F4l8O5nbcjo,990
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- geney-1.3.70.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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- geney-1.3.70.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.3.70.dist-info/RECORD,,
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+ geney-1.3.71.dist-info/METADATA,sha256=qwuLQNso5Kv8Xs23-90MykN695SOLmAkMbpaco1FbhM,990
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+ geney-1.3.71.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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+ geney-1.3.71.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.3.71.dist-info/RECORD,,
{geney-1.3.70.dist-info → geney-1.3.71.dist-info}/WHEEL RENAMED
File without changes