geney 1.3.44__py2.py3-none-any.whl → 1.3.46__py2.py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (5) hide show
  1. geney/SeqMats.py +4 -1
  2. {geney-1.3.44.dist-info → geney-1.3.46.dist-info}/METADATA +1 -1
  3. {geney-1.3.44.dist-info → geney-1.3.46.dist-info}/RECORD +5 -5
  4. {geney-1.3.44.dist-info → geney-1.3.46.dist-info}/WHEEL +0 -0
  5. {geney-1.3.44.dist-info → geney-1.3.46.dist-info}/top_level.txt +0 -0
geney/SeqMats.py CHANGED
@@ -277,6 +277,9 @@ class SeqMat:
277
277
 
278
278
  @staticmethod
279
279
  def _is_monotonic(inds):
280
+ if len(inds) == 1:
281
+ return True
282
+
280
283
  return all(x >= y for x, y in zip(inds, inds[1:])) if inds[0] > inds[-1] else all(
281
284
  x <= y for x, y in zip(inds, inds[1:]))
282
285
 
@@ -352,7 +355,7 @@ class SeqMat:
352
355
 
353
356
  def orf_seqmat(self, tis_index):
354
357
  if tis_index not in self.indices:
355
- return SeqMat.from_seq('')
358
+ return SeqMat.from_seq({'seq': ''})
356
359
 
357
360
  temp = self.seqmat[:, self._rel_index(tis_index):]
358
361
  temp = temp[:, temp[0, :] != 5]
{geney-1.3.44.dist-info → geney-1.3.46.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: geney
3
- Version: 1.3.44
3
+ Version: 1.3.46
4
4
  Summary: A Python package for gene expression modeling.
5
5
  Home-page: https://github.com/nicolaslynn/geney
6
6
  Author: Nicolas Lynn
{geney-1.3.44.dist-info → geney-1.3.46.dist-info}/RECORD RENAMED
@@ -1,6 +1,6 @@
1
1
  geney/Fasta_segment.py,sha256=99HxNGNh_MfdVW6hhtlb1vOn7eSmT7oFoEfHDFMxG8w,11275
2
2
  geney/Gene.py,sha256=nMWJjoQaiVFm2iRjoiq7ghZqnXtW0tJDcq2S0AyOIvY,6883
3
- geney/SeqMats.py,sha256=CCl3BnfWH2BGwrStQtFkAIkVu-UaCbd9h0J8hLdtfWI,18978
3
+ geney/SeqMats.py,sha256=veB3-Bj2Ye4yBkv3okQhvBVEg-MuUX0OMDHs5AvLEJE,19039
4
4
  geney/Transcript.py,sha256=CpfxYkuCwFILozrtLuiWnlr1mRnMKn4o84HVJislgYs,14499
5
5
  geney/__init__.py,sha256=eBdDl42N6UhcYeZDjOnv199Z88fI5_8Y6xW8447OKXM,755
6
6
  geney/_mutation_utils.py,sha256=dHssUsnii_mf-wuRoMmF13UlD7k3ml_VwQMItTYnXpU,1132
@@ -25,7 +25,7 @@ geney/translation_initiation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
25
25
  geney/translation_initiation/tis_utils.py,sha256=AF3siFjuQH-Rs44EV-80zHdbxRMvN4woLFSHroWIETc,4448
26
26
  geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
27
27
  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
28
- geney-1.3.44.dist-info/METADATA,sha256=kcQrm5sMzh8EAKtNREtxygniiyIe3rrvKNMjVu-YYLQ,990
29
- geney-1.3.44.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
30
- geney-1.3.44.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
31
- geney-1.3.44.dist-info/RECORD,,
28
+ geney-1.3.46.dist-info/METADATA,sha256=OF3VJOHxy3RR_-9Zu5jrpeMpIofUkTeIMp-cD6assyQ,990
29
+ geney-1.3.46.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
30
+ geney-1.3.46.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
31
+ geney-1.3.46.dist-info/RECORD,,
{geney-1.3.44.dist-info → geney-1.3.46.dist-info}/WHEEL RENAMED
File without changes