geney 1.3.42__py2.py3-none-any.whl → 1.3.43__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/splicing_utils.py +1 -2
  2. {geney-1.3.42.dist-info → geney-1.3.43.dist-info}/METADATA +1 -1
  3. {geney-1.3.42.dist-info → geney-1.3.43.dist-info}/RECORD +5 -5
  4. {geney-1.3.42.dist-info → geney-1.3.43.dist-info}/WHEEL +0 -0
  5. {geney-1.3.42.dist-info → geney-1.3.43.dist-info}/top_level.txt +0 -0
geney/splicing_utils.py CHANGED
@@ -413,7 +413,6 @@ def process_pairwise_epistasis(mids, engine='pangolin', fprint=False, db=None):
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  delta2 = m2.get(k, {'delta': 0})['delta'] # max(-1, min(10, m2.get(k, {'delta': 0})['delta'] / ref_val))
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  deltab = mb.get(k, {'delta': 0})['delta'] # max(-1, min(10, mb.get(k, {'delta': 0})['delta'] / ref_val))
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- print(event, k, delta1, delta2, deltab)
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  ms1.append(delta1)
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  ms2.append(delta2)
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  msb.append(deltab)
@@ -482,7 +481,7 @@ class Missplicing:
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  def __str__(self):
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  import pprint
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  """String representation displays the filtered splicing events passing the threshold."""
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- return pprint.pprint(self.aberrant_splicing)
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+ return pprint.pformat(self.aberrant_splicing)
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  def __bool__(self):
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  """
{geney-1.3.42.dist-info → geney-1.3.43.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.3.42
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+ Version: 1.3.43
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.3.42.dist-info → geney-1.3.43.dist-info}/RECORD RENAMED
@@ -16,7 +16,7 @@ geney/pangolin_utils.py,sha256=i5j5vEMCWOTIa1mRP2377BAhlUFZjHBzTQBips4lA_4,2934
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  geney/power_utils.py,sha256=MehZFUdkJ2EFUot709yPEDxSkXmH5XevMebX2HD768A,7330
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  geney/seqmat_utils.py,sha256=wzb3PX5it5bpIFQvcxyzlxfhoJTbHHbsjg0rzh05iVs,19753
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  geney/spliceai_utils.py,sha256=PFIhTK8Ihrj-cv5tgRN0UFPYEmC4uxtqXSP9bBLnZRM,3077
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- geney/splicing_utils.py,sha256=GFqmGZ-lK5oDook4FZun-mAq-oqZGg6dHZaOdp38B4M,38540
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+ geney/splicing_utils.py,sha256=TQsRhEegW4SW6t7dghHQ5vGgn9WdioTcai6EzPPcdKM,38485
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  geney/survival_utils.py,sha256=KnAzEviMuXh6SnVXId9PgsFLSbgkduTvYoIthxN7FPA,6886
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  geney/tcga_utils.py,sha256=D_BNHm-D_K408dlcJm3hzH2c6QNFjQsKvUcOPiQRk7g,17612
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  geney/tis_utils.py,sha256=2makfGfVlDFVIbxzXE85AY9jmAjcNmxyIAxjvkRA5LY,7396
@@ -25,7 +25,7 @@ geney/translation_initiation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
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  geney/translation_initiation/tis_utils.py,sha256=AF3siFjuQH-Rs44EV-80zHdbxRMvN4woLFSHroWIETc,4448
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  geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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- geney-1.3.42.dist-info/METADATA,sha256=T03j-Q8uS4YIhmyJDA4SxYH_1k6nMZvd98tM1ElEpAM,990
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- geney-1.3.42.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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- geney-1.3.42.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.3.42.dist-info/RECORD,,
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+ geney-1.3.43.dist-info/METADATA,sha256=kqekeyuXWKLb40n_ShUhUqBqqZAyIob5vEDY8dgiSxI,990
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+ geney-1.3.43.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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+ geney-1.3.43.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.3.43.dist-info/RECORD,,
{geney-1.3.42.dist-info → geney-1.3.43.dist-info}/WHEEL RENAMED
File without changes