geney 1.3.26__py2.py3-none-any.whl → 1.3.27__py2.py3-none-any.whl

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Files changed (6) hide show
  1. geney/SeqMats.py +0 -2
  2. geney/splicing_utils.py +1 -1
  3. {geney-1.3.26.dist-info → geney-1.3.27.dist-info}/METADATA +1 -1
  4. {geney-1.3.26.dist-info → geney-1.3.27.dist-info}/RECORD +6 -6
  5. {geney-1.3.26.dist-info → geney-1.3.27.dist-info}/WHEEL +0 -0
  6. {geney-1.3.26.dist-info → geney-1.3.27.dist-info}/top_level.txt +0 -0
geney/SeqMats.py CHANGED
@@ -213,8 +213,6 @@ class SeqMat:
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  def _rel_index(self, pos):
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- # pos = int(pos)
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- print("sup")
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  if pos in self.raw_indices:
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  return np.where(self.seqmat[self.ROW_INDS, :] == pos)[0][0]
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  else:
geney/splicing_utils.py CHANGED
@@ -226,7 +226,7 @@ def find_transcript_missplicing(mut_id, transcript=None, threshold=0.5, engine='
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  if len(mutations) == 0:
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  return Missplicing({'missed_acceptors': {}, 'missed_donors': {}, 'discovered_acceptors': {}, 'discovered_donors': {}})
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- center = np.mean([m.indices[0] for m in mutations]) // 11
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+ center = int(np.mean([m.indices[0] for m in mutations]))
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  for mutation in mutations:
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  variant_transcript.mutate(mutation, inplace=True)
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{geney-1.3.26.dist-info → geney-1.3.27.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.3.26
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+ Version: 1.3.27
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.3.26.dist-info → geney-1.3.27.dist-info}/RECORD RENAMED
@@ -1,6 +1,6 @@
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  geney/Fasta_segment.py,sha256=99HxNGNh_MfdVW6hhtlb1vOn7eSmT7oFoEfHDFMxG8w,11275
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  geney/Gene.py,sha256=JGWtfA6-d1W3I9YRASwaF8vaZ6CCuY0KEawQNdloIqY,6259
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- geney/SeqMats.py,sha256=jC_0MnvJxKNb7_L-fgEWMd8Wi-4KVuvDbMCSFSqfL7w,18865
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+ geney/SeqMats.py,sha256=aLpqd7RJSEU07jdPXpbtZPeb2D9BxrZuW6BTkcXpNE4,18819
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  geney/Transcript.py,sha256=eRZXVVxDVBbv0l385bnAOBFRBSzBwppXcbBq8KXkwlo,14443
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  geney/__init__.py,sha256=eBdDl42N6UhcYeZDjOnv199Z88fI5_8Y6xW8447OKXM,755
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  geney/_mutation_utils.py,sha256=dHssUsnii_mf-wuRoMmF13UlD7k3ml_VwQMItTYnXpU,1132
@@ -16,7 +16,7 @@ geney/pangolin_utils.py,sha256=i5j5vEMCWOTIa1mRP2377BAhlUFZjHBzTQBips4lA_4,2934
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  geney/power_utils.py,sha256=MehZFUdkJ2EFUot709yPEDxSkXmH5XevMebX2HD768A,7330
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  geney/seqmat_utils.py,sha256=wzb3PX5it5bpIFQvcxyzlxfhoJTbHHbsjg0rzh05iVs,19753
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  geney/spliceai_utils.py,sha256=PFIhTK8Ihrj-cv5tgRN0UFPYEmC4uxtqXSP9bBLnZRM,3077
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- geney/splicing_utils.py,sha256=nsOCSjknIjbPUwAVWyig1q9OrQ-Q21dgkgmbzpvL0G4,35564
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+ geney/splicing_utils.py,sha256=srjvWJi_XqizOiXAVMCjszZ92kK46_YIC7iYDqCyebA,35563
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  geney/survival_utils.py,sha256=KnAzEviMuXh6SnVXId9PgsFLSbgkduTvYoIthxN7FPA,6886
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  geney/tcga_utils.py,sha256=D_BNHm-D_K408dlcJm3hzH2c6QNFjQsKvUcOPiQRk7g,17612
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  geney/tis_utils.py,sha256=2makfGfVlDFVIbxzXE85AY9jmAjcNmxyIAxjvkRA5LY,7396
@@ -25,7 +25,7 @@ geney/translation_initiation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
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  geney/translation_initiation/tis_utils.py,sha256=AF3siFjuQH-Rs44EV-80zHdbxRMvN4woLFSHroWIETc,4448
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  geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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- geney-1.3.26.dist-info/METADATA,sha256=mTYsp6ghf5TMklnrKNBIUZ6-JBX1_CYZXnF-RKBMPaQ,968
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- geney-1.3.26.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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- geney-1.3.26.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.3.26.dist-info/RECORD,,
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+ geney-1.3.27.dist-info/METADATA,sha256=Z9E9IeMrdmc9FkQpS-9AcD0Evm4EriRFB7x2L8R34rc,968
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+ geney-1.3.27.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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+ geney-1.3.27.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.3.27.dist-info/RECORD,,
{geney-1.3.26.dist-info → geney-1.3.27.dist-info}/WHEEL RENAMED
File without changes