geney 1.3.22__py2.py3-none-any.whl → 1.3.23__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/splicing_utils.py +1 -2
  2. {geney-1.3.22.dist-info → geney-1.3.23.dist-info}/METADATA +1 -1
  3. {geney-1.3.22.dist-info → geney-1.3.23.dist-info}/RECORD +5 -5
  4. {geney-1.3.22.dist-info → geney-1.3.23.dist-info}/WHEEL +0 -0
  5. {geney-1.3.22.dist-info → geney-1.3.23.dist-info}/top_level.txt +0 -0
geney/splicing_utils.py CHANGED
@@ -218,7 +218,7 @@ def find_transcript_missplicing(mut_id, transcript=None, threshold=0.5, engine='
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  if db is not None:
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  cached_data = db.get_mutation_data(engine, gene.gene_name, mut_id, reference_transcript.transcript_id)
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  if cached_data and not force_recompute:
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- return cached_data
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+ return Missplicing(cached_data)
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  variant_transcript = reference_transcript.clone()
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  mutations = [MutSeqMat.from_mutid(m) for m in mut_id.split('|')]
@@ -231,7 +231,6 @@ def find_transcript_missplicing(mut_id, transcript=None, threshold=0.5, engine='
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  variant_transcript.mutate(mutation, inplace=True)
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  missplicing = find_transcript_missplicing_seqs(reference_transcript.pre_mrna.get_context(center, 7500, padding='N'), variant_transcript.pre_mrna.get_context(center, 7500, padding='N'), reference_transcript.donors, reference_transcript.acceptors, threshold=threshold, engine=engine)
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-
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  if db is not None:
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  db.store_mutation_data(engine, gene.gene_name, mut_id, reference_transcript.transcript_id, missplicing.missplicing)
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{geney-1.3.22.dist-info → geney-1.3.23.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.3.22
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+ Version: 1.3.23
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.3.22.dist-info → geney-1.3.23.dist-info}/RECORD RENAMED
@@ -16,7 +16,7 @@ geney/pangolin_utils.py,sha256=i5j5vEMCWOTIa1mRP2377BAhlUFZjHBzTQBips4lA_4,2934
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  geney/power_utils.py,sha256=MehZFUdkJ2EFUot709yPEDxSkXmH5XevMebX2HD768A,7330
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  geney/seqmat_utils.py,sha256=wzb3PX5it5bpIFQvcxyzlxfhoJTbHHbsjg0rzh05iVs,19753
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  geney/spliceai_utils.py,sha256=PFIhTK8Ihrj-cv5tgRN0UFPYEmC4uxtqXSP9bBLnZRM,3077
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- geney/splicing_utils.py,sha256=CbULBIj9fZMNDjb6rFWv8CemqBRStpwAnuRYEHVSro8,35551
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+ geney/splicing_utils.py,sha256=mA2IgLx0gXi4IFzB1bIaoai1nLC34M-IOcgqcDUaivI,35563
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  geney/survival_utils.py,sha256=KnAzEviMuXh6SnVXId9PgsFLSbgkduTvYoIthxN7FPA,6886
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  geney/tcga_utils.py,sha256=D_BNHm-D_K408dlcJm3hzH2c6QNFjQsKvUcOPiQRk7g,17612
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  geney/tis_utils.py,sha256=2makfGfVlDFVIbxzXE85AY9jmAjcNmxyIAxjvkRA5LY,7396
@@ -25,7 +25,7 @@ geney/translation_initiation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
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  geney/translation_initiation/tis_utils.py,sha256=AF3siFjuQH-Rs44EV-80zHdbxRMvN4woLFSHroWIETc,4448
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  geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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- geney-1.3.22.dist-info/METADATA,sha256=qEvAuYy4vD8BV3s8-S5yF02j4jbsKqpxcd-sxpnDax0,971
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- geney-1.3.22.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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- geney-1.3.22.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.3.22.dist-info/RECORD,,
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+ geney-1.3.23.dist-info/METADATA,sha256=1kzW2OTgrk2DJK2TZGxQvYZ47Rm1KSsTsDu7F4uCRnA,971
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+ geney-1.3.23.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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+ geney-1.3.23.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.3.23.dist-info/RECORD,,
{geney-1.3.22.dist-info → geney-1.3.23.dist-info}/WHEEL RENAMED
File without changes