geney 1.3.1__py2.py3-none-any.whl → 1.3.2__py2.py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
geney/oncosplice.py
CHANGED
|
@@ -4,7 +4,7 @@ import hashlib
|
|
|
4
4
|
from tqdm import tqdm
|
|
5
5
|
import pandas as pd
|
|
6
6
|
import numpy as np
|
|
7
|
-
from
|
|
7
|
+
from .SeqMats import SeqMat, MutSeqMat
|
|
8
8
|
from .splicing_utils import find_transcript_missplicing_seqs, develop_aberrant_splicing
|
|
9
9
|
from .tis_utils import find_tis
|
|
10
10
|
|
|
@@ -10,7 +10,7 @@ geney/graphic_utils.py,sha256=oMsBpB9YeEn96gGpKh4MmtagJffWZbk-xPrIwHvkFhA,11016
|
|
|
10
10
|
geney/gtex_utils.py,sha256=asL2lHyU5KsbWpV096vkf1Ka7hSo_RRfZqw7p5nERmE,1919
|
|
11
11
|
geney/immune_utils.py,sha256=ZRni5ttrhpYBnmNr0d0ZatIbNPYs4nmQuoUO00SpsS4,5271
|
|
12
12
|
geney/mutation_utils.py,sha256=C_kv2MB_L8LlhX3W2ooXjJ3uDoJ8zX1WeDtZKoBZJkI,1547
|
|
13
|
-
geney/oncosplice.py,sha256=
|
|
13
|
+
geney/oncosplice.py,sha256=FdvuROk2G7wwLoB5lLzYia8Smw9hHZeVs-J2MUoAwlU,22106
|
|
14
14
|
geney/pangolin_utils.py,sha256=i5j5vEMCWOTIa1mRP2377BAhlUFZjHBzTQBips4lA_4,2934
|
|
15
15
|
geney/power_utils.py,sha256=MehZFUdkJ2EFUot709yPEDxSkXmH5XevMebX2HD768A,7330
|
|
16
16
|
geney/seqmat_utils.py,sha256=wzb3PX5it5bpIFQvcxyzlxfhoJTbHHbsjg0rzh05iVs,19753
|
|
@@ -24,7 +24,7 @@ geney/translation_initiation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
|
|
|
24
24
|
geney/translation_initiation/tis_utils.py,sha256=AF3siFjuQH-Rs44EV-80zHdbxRMvN4woLFSHroWIETc,4448
|
|
25
25
|
geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
|
|
26
26
|
geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
|
|
27
|
-
geney-1.3.
|
|
28
|
-
geney-1.3.
|
|
29
|
-
geney-1.3.
|
|
30
|
-
geney-1.3.
|
|
27
|
+
geney-1.3.2.dist-info/METADATA,sha256=aGPdV-x5PcONjV5ylUg8rYhW0eo4Fm2HDOE8dzldpcg,994
|
|
28
|
+
geney-1.3.2.dist-info/WHEEL,sha256=fS9sRbCBHs7VFcwJLnLXN1MZRR0_TVTxvXKzOnaSFs8,110
|
|
29
|
+
geney-1.3.2.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
|
|
30
|
+
geney-1.3.2.dist-info/RECORD,,
|
|
File without changes
|
|
File without changes
|