geney 1.2.67__py2.py3-none-any.whl → 1.2.68__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/seqmat_utils.py +12 -1
  2. {geney-1.2.67.dist-info → geney-1.2.68.dist-info}/METADATA +1 -1
  3. {geney-1.2.67.dist-info → geney-1.2.68.dist-info}/RECORD +5 -5
  4. {geney-1.2.67.dist-info → geney-1.2.68.dist-info}/WHEEL +0 -0
  5. {geney-1.2.67.dist-info → geney-1.2.68.dist-info}/top_level.txt +0 -0
geney/seqmat_utils.py CHANGED
@@ -279,7 +279,18 @@ class Gene:
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  @property
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  def primary_transcript(self):
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  if not hasattr(self, '_primary_transcript'):
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- self._primary_transcript = [k for k, v in self.transcripts.items() if v.get('primary_transcript')][0]
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+ primary_transcripts = [k for k, v in self.transcripts.items() if v.get('primary_transcript')]
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+ if len(primary_transcripts) > 0:
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+ self._primary_transcript = primary_transcripts[0]
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+ return self._primary_transcript
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+
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+ primary_transcripts = [k for k, v in self.transcripts.items() if v.get('transcript_biotype') == 'protein_coding']
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+ if len(primary_transcripts) > 0:
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+ self._primary_transcript = primary_transcripts[0]
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+ return self._primary_transcript
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+
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+ self._primar_transcript = None
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+
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  return self._primary_transcript
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{geney-1.2.67.dist-info → geney-1.2.68.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.2.67
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+ Version: 1.2.68
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.2.67.dist-info → geney-1.2.68.dist-info}/RECORD RENAMED
@@ -9,7 +9,7 @@ geney/mutation_utils.py,sha256=C_kv2MB_L8LlhX3W2ooXjJ3uDoJ8zX1WeDtZKoBZJkI,1547
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  geney/oncosplice.py,sha256=eWgY2Lcj894UBFnIVhbxiVz5oqASHg-Ot1wFbjlJbI8,21857
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  geney/pangolin_utils.py,sha256=i5j5vEMCWOTIa1mRP2377BAhlUFZjHBzTQBips4lA_4,2934
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  geney/power_utils.py,sha256=MehZFUdkJ2EFUot709yPEDxSkXmH5XevMebX2HD768A,7330
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- geney/seqmat_utils.py,sha256=prWq3d3rPiyA_evQpY3FP5I-NQFuf7py7Ene8fNZ5DA,19271
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+ geney/seqmat_utils.py,sha256=wzb3PX5it5bpIFQvcxyzlxfhoJTbHHbsjg0rzh05iVs,19753
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  geney/spliceai_utils.py,sha256=PFIhTK8Ihrj-cv5tgRN0UFPYEmC4uxtqXSP9bBLnZRM,3077
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  geney/splicing_utils.py,sha256=faXlBzxohKE02_Jlx6imIP1DKWhGrwQ6mrLldBlqkNU,19218
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  geney/survival_utils.py,sha256=KnAzEviMuXh6SnVXId9PgsFLSbgkduTvYoIthxN7FPA,6886
@@ -20,7 +20,7 @@ geney/translation_initiation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
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  geney/translation_initiation/tis_utils.py,sha256=AF3siFjuQH-Rs44EV-80zHdbxRMvN4woLFSHroWIETc,4448
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  geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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- geney-1.2.67.dist-info/METADATA,sha256=RstIg2k5z5muDUwVglNvZpJQEsMqiXB9jcBaVdvK6S4,948
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- geney-1.2.67.dist-info/WHEEL,sha256=fS9sRbCBHs7VFcwJLnLXN1MZRR0_TVTxvXKzOnaSFs8,110
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- geney-1.2.67.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.2.67.dist-info/RECORD,,
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+ geney-1.2.68.dist-info/METADATA,sha256=Ircwpep9o4hX8T1-GhKK5WY2nw1rOkLPHJuHMLIPhTE,948
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+ geney-1.2.68.dist-info/WHEEL,sha256=fS9sRbCBHs7VFcwJLnLXN1MZRR0_TVTxvXKzOnaSFs8,110
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+ geney-1.2.68.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.2.68.dist-info/RECORD,,
{geney-1.2.67.dist-info → geney-1.2.68.dist-info}/WHEEL RENAMED
File without changes