geney 1.2.58__py2.py3-none-any.whl → 1.2.59__py2.py3-none-any.whl
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geney/spliceai_utils.py
CHANGED
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@@ -1,10 +1,12 @@
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#### SpliceAI Modules
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from keras.models import load_model
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from pkg_resources import resource_filename
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# from pkg_resources import resource_filename
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from importlib import resources
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# from spliceai.utils import one_hot_encode
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import numpy as np
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import tensorflow as tf
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import sys
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# Check if GPU is available
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if tf.config.list_physical_devices('GPU'):
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@@ -15,9 +17,18 @@ else:
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# tf.config.threading.set_intra_op_parallelism_threads(1)
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# tf.config.threading.set_inter_op_parallelism_threads(1)
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if sys.platform == 'darwin':
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sai_paths = ('models/spliceai{}.h5'.format(x) for x in range(1, 6))
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# sai_models = [load_model(resource_filename('spliceai', x)) for x in sai_paths]
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sai_models = [load_model(resources.files('spliceai').joinpath(f)) for f in sai_paths]
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else:
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sai_paths = ['/tamir2/nicolaslynn/home/miniconda3/lib/python3.10/site-packages/spliceai/models/spliceai1.h5',
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'/tamir2/nicolaslynn/home/miniconda3/lib/python3.10/site-packages/spliceai/models/spliceai2.h5',
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'/tamir2/nicolaslynn/home/miniconda3/lib/python3.10/site-packages/spliceai/models/spliceai3.h5',
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'/tamir2/nicolaslynn/home/miniconda3/lib/python3.10/site-packages/spliceai/models/spliceai4.h5',
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'/tamir2/nicolaslynn/home/miniconda3/lib/python3.10/site-packages/spliceai/models/spliceai5.h5']
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sai_models = [load_model(f) for f in sai_paths]
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def one_hot_encode(seq):
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@@ -10,7 +10,7 @@ geney/oncosplice.py,sha256=eWgY2Lcj894UBFnIVhbxiVz5oqASHg-Ot1wFbjlJbI8,21857
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geney/pangolin_utils.py,sha256=HvXfdLhHWTDXNmYtc8K3p64iTvDtsBq6-Jml5tpg7JI,2930
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geney/power_utils.py,sha256=MehZFUdkJ2EFUot709yPEDxSkXmH5XevMebX2HD768A,7330
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geney/seqmat_utils.py,sha256=2cRXT_Ox4IdzCM8x3H2HexxFZzjo5WHs0HZiUQv8fBM,18347
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geney/spliceai_utils.py,sha256=
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geney/spliceai_utils.py,sha256=PFIhTK8Ihrj-cv5tgRN0UFPYEmC4uxtqXSP9bBLnZRM,3077
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geney/splicing_utils.py,sha256=34xdarFpTHsHZkhi7VrHby9DaIBZ2xCLqPMrTmasEgE,16860
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geney/survival_utils.py,sha256=KnAzEviMuXh6SnVXId9PgsFLSbgkduTvYoIthxN7FPA,6886
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geney/tcga_utils.py,sha256=D_BNHm-D_K408dlcJm3hzH2c6QNFjQsKvUcOPiQRk7g,17612
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@@ -20,7 +20,7 @@ geney/translation_initiation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
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geney/translation_initiation/tis_utils.py,sha256=AF3siFjuQH-Rs44EV-80zHdbxRMvN4woLFSHroWIETc,4448
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geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
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geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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geney-1.2.
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geney-1.2.
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geney-1.2.
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geney-1.2.
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geney-1.2.59.dist-info/METADATA,sha256=fiwDiB2jrpokLcoAhC6YQ2OQyY6RBdJSjhQx_T99lXo,948
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geney-1.2.59.dist-info/WHEEL,sha256=fS9sRbCBHs7VFcwJLnLXN1MZRR0_TVTxvXKzOnaSFs8,110
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geney-1.2.59.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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geney-1.2.59.dist-info/RECORD,,
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File without changes
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File without changes
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